Wall clock time and date at job start Wed Apr 1 2020 03:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86798 * 119.99638 * 2 1 4 4 H 1.48502 * 109.46752 * 239.99626 * 3 2 1 5 5 H 1.48493 * 109.47321 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47456 * 119.99995 * 3 2 1 7 7 C 1.38797 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99660 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00330 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00030 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47187 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00069 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00106 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99984 * 175.46218 * 13 11 10 15 15 C 1.52999 * 115.54616 * 294.47958 * 14 13 11 16 16 N 1.46497 * 109.47461 * 324.38868 * 15 14 13 17 17 C 1.34774 * 120.00202 * 174.51904 * 16 15 14 18 18 O 1.21287 * 119.99803 * 0.02562 * 17 16 15 19 19 C 1.50692 * 120.00150 * 179.97438 * 17 16 15 20 20 C 1.53005 * 109.47132 * 180.02562 * 19 17 16 21 21 N 1.46506 * 109.47050 * 180.02562 * 20 19 17 22 22 C 1.34780 * 119.99647 * 180.02562 * 21 20 19 23 23 N 1.34773 * 119.99429 * 180.02562 * 22 21 20 24 24 O 1.21580 * 120.00251 * 359.97438 * 22 21 20 25 25 C 1.52993 * 117.49990 * 148.80951 * 14 13 11 26 26 C 1.52999 * 117.49914 * 80.14739 * 14 13 11 27 27 H 0.96995 * 120.00197 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.47401 * 60.00125 * 10 9 7 29 29 H 1.08999 * 109.47705 * 299.99752 * 10 9 7 30 30 H 0.97001 * 120.00110 * 355.18850 * 13 11 10 31 31 H 1.09005 * 109.46957 * 84.39267 * 15 14 13 32 32 H 1.08997 * 109.47016 * 204.38643 * 15 14 13 33 33 H 0.97002 * 120.00165 * 354.52474 * 16 15 14 34 34 H 1.09003 * 109.47601 * 300.00164 * 19 17 16 35 35 H 1.09002 * 109.47102 * 60.00570 * 19 17 16 36 36 H 1.08996 * 109.47218 * 299.99923 * 20 19 17 37 37 H 1.08996 * 109.47097 * 60.00528 * 20 19 17 38 38 H 0.97000 * 119.99677 * 359.97438 * 21 20 19 39 39 H 0.97002 * 120.00517 * 0.02562 * 23 22 21 40 40 H 0.96999 * 120.00142 * 180.02562 * 23 22 21 41 41 H 1.09005 * 117.49674 * 359.97438 * 25 14 13 42 42 H 1.09001 * 117.50250 * 145.01693 * 25 14 13 43 43 H 1.08994 * 117.50200 * 214.97932 * 26 14 13 44 44 H 1.09002 * 117.49893 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8443 -6.3431 0.0008 14 6 2.3338 -7.7126 0.1018 15 6 1.6465 -8.0647 1.4225 16 7 2.3248 -7.3779 2.5245 17 6 1.8247 -7.4510 3.7738 18 8 0.8133 -8.0859 3.9860 19 6 2.5229 -6.7450 4.9074 20 6 1.7555 -6.9872 6.2088 21 7 2.4339 -6.3003 7.3108 22 6 1.9343 -6.3742 8.5603 23 7 2.5581 -5.7418 9.5739 24 8 0.9203 -7.0105 8.7730 25 6 3.1299 -8.8166 -0.5967 26 6 1.7878 -8.3588 -1.1731 27 1 -0.4850 0.8400 -0.0004 28 1 3.1246 -3.7313 0.8906 29 1 3.1246 -3.7313 -0.8894 30 1 3.7988 -6.1853 -0.0704 31 1 0.6037 -7.7494 1.3848 32 1 1.6947 -9.1420 1.5812 33 1 3.1339 -6.8704 2.3549 34 1 3.5371 -7.1318 5.0068 35 1 2.5604 -5.6754 4.7011 36 1 0.7412 -6.6007 6.1098 37 1 1.7184 -8.0568 6.4150 38 1 3.2431 -5.7929 7.1411 39 1 3.3664 -5.2332 9.4041 40 1 2.1988 -5.7953 10.4733 41 1 4.0334 -8.5240 -1.1318 42 1 3.1638 -9.7941 -0.1155 43 1 0.9392 -9.0352 -1.0708 44 1 1.8080 -7.7648 -2.0868 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535255062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:50 Heat of formation + Delta-G solvation = -118.852162 kcal Electronic energy + Delta-G solvation = -27107.915518 eV Core-core repulsion = 22992.722824 eV Total energy + Delta-G solvation = -4115.192694 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.135 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.36063 -40.89357 -40.33350 -38.44870 -36.24286 -35.28212 -34.66262 -34.57260 -34.05116 -31.72713 -30.48534 -28.19380 -27.63990 -24.74009 -23.60668 -22.63048 -22.24259 -21.47337 -20.75310 -19.82833 -19.37167 -18.35440 -18.16848 -17.75522 -17.59392 -17.13155 -16.86453 -16.55261 -16.34888 -16.19377 -15.93333 -15.62046 -15.30311 -15.13159 -15.00625 -14.75441 -14.52009 -14.33547 -13.91214 -13.67108 -13.41939 -13.14928 -12.93040 -12.85395 -12.61685 -12.51356 -12.39632 -11.95491 -11.75051 -11.59780 -11.38821 -11.11417 -11.01949 -10.81756 -10.76499 -10.23478 -10.17590 -10.05257 -9.99497 -8.64975 -8.33081 -6.11045 1.26965 1.44554 1.47493 1.55581 1.58358 1.64082 1.73235 2.11682 2.14418 2.28983 2.37522 2.75596 3.01371 3.32014 3.54005 3.55902 3.72334 3.85707 3.87207 3.98938 4.06756 4.09089 4.34163 4.47820 4.51136 4.55248 4.62974 4.76263 4.78860 4.84844 4.90501 5.01433 5.21408 5.32361 5.38747 5.42850 5.57430 5.88522 6.02624 6.20695 6.48493 6.53852 7.08378 7.10335 7.20905 7.31277 7.64033 8.75594 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.006527 B = 0.003117 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4288.596950 B = 8979.540623 C =12560.696300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.012 3.988 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.543 4.543 8 H 0.086 0.914 9 S -0.157 6.157 10 C -0.128 4.128 11 C 0.537 3.463 12 O -0.554 6.554 13 N -0.682 5.682 14 C 0.069 3.931 15 C 0.157 3.843 16 N -0.708 5.708 17 C 0.510 3.490 18 O -0.588 6.588 19 C -0.137 4.137 20 C 0.158 3.842 21 N -0.728 5.728 22 C 0.696 3.304 23 N -0.845 5.845 24 O -0.652 6.652 25 C -0.120 4.120 26 C -0.182 4.182 27 H 0.270 0.730 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.422 0.578 31 H 0.037 0.963 32 H 0.090 0.910 33 H 0.414 0.586 34 H 0.146 0.854 35 H 0.121 0.879 36 H 0.038 0.962 37 H 0.057 0.943 38 H 0.418 0.582 39 H 0.416 0.584 40 H 0.420 0.580 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.102 0.898 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.168 -15.408 8.027 26.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.691 4.691 8 H 0.104 0.896 9 S 0.071 5.929 10 C -0.279 4.279 11 C 0.323 3.677 12 O -0.430 6.430 13 N -0.338 5.338 14 C -0.019 4.019 15 C 0.031 3.969 16 N -0.360 5.360 17 C 0.297 3.703 18 O -0.469 6.469 19 C -0.177 4.177 20 C 0.032 3.968 21 N -0.386 5.386 22 C 0.393 3.607 23 N -0.414 5.414 24 O -0.534 6.534 25 C -0.158 4.158 26 C -0.221 4.221 27 H 0.079 0.921 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.261 0.739 31 H 0.055 0.945 32 H 0.108 0.892 33 H 0.252 0.748 34 H 0.164 0.836 35 H 0.139 0.861 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.256 0.744 39 H 0.248 0.752 40 H 0.253 0.747 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.120 0.880 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 16.506 -16.642 8.181 24.826 hybrid contribution 2.072 2.113 -0.093 2.961 sum 18.578 -14.529 8.088 24.933 Atomic orbital electron populations 1.70190 1.08094 1.28586 1.48147 1.26131 0.95877 1.03394 0.93852 0.85024 0.77779 0.75726 0.79609 1.18643 1.20877 1.18321 1.23170 0.95373 0.91883 1.58648 0.89599 1.85752 1.10731 0.99407 1.97054 1.23365 1.03418 0.94056 1.07045 1.20115 0.86276 0.86432 0.74847 1.90734 1.17630 1.85849 1.48772 1.45062 1.10300 1.02858 1.75555 1.20764 1.05816 0.82247 0.93051 1.20918 0.95313 0.97207 0.83454 1.45665 1.30129 1.53602 1.06652 1.20979 0.84248 0.80310 0.84722 1.90743 1.26933 1.44539 1.84658 1.21739 1.02022 1.03695 0.90246 1.20623 0.95075 0.96804 0.84305 1.44762 1.31504 1.56793 1.05582 1.16255 0.82618 0.79864 0.81953 1.42744 1.32214 1.56484 1.09958 1.90964 1.28515 1.49534 1.84416 1.23585 0.95343 0.96927 0.99901 1.23370 0.99330 1.03194 0.96169 0.92144 0.86572 0.87252 0.73894 0.94483 0.89174 0.74846 0.83614 0.86110 0.94321 0.92450 0.74417 0.75248 0.74690 0.85693 0.85395 0.87952 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.52 13.22 21.65 0.29 -55.23 16 2 C 0.01 0.67 5.49 84.86 0.47 1.13 16 3 Si 1.00 42.10 29.55 68.60 2.03 44.13 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.54 -29.65 9.50 67.95 0.65 -29.00 16 8 H 0.09 4.26 7.80 -2.91 -0.02 4.24 16 9 S -0.16 -8.33 20.57 -56.49 -1.16 -9.49 16 10 C -0.13 -4.47 6.16 71.24 0.44 -4.03 16 11 C 0.54 17.38 7.70 87.66 0.68 18.06 16 12 O -0.55 -24.22 15.38 -3.02 -0.05 -24.27 16 13 N -0.68 -13.20 4.44 -422.92 -1.88 -15.08 16 14 C 0.07 1.27 1.97 3.60 0.01 1.27 16 15 C 0.16 3.59 5.43 86.38 0.47 4.05 16 16 N -0.71 -14.02 5.40 -463.07 -2.50 -16.51 16 17 C 0.51 12.28 7.83 87.65 0.69 12.97 16 18 O -0.59 -20.52 15.97 -3.05 -0.05 -20.56 16 19 C -0.14 -2.01 5.81 29.85 0.17 -1.83 16 20 C 0.16 3.46 4.96 86.38 0.43 3.89 16 21 N -0.73 -11.65 5.56 -478.53 -2.66 -14.31 16 22 C 0.70 15.15 8.84 179.05 1.58 16.74 16 23 N -0.84 -9.24 8.88 -184.75 -1.64 -10.88 16 24 O -0.65 -22.36 17.18 -3.97 -0.07 -22.43 16 25 C -0.12 -1.18 10.11 30.62 0.31 -0.87 16 26 C -0.18 -3.31 10.18 30.62 0.31 -2.99 16 27 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 28 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 29 H 0.11 3.41 8.14 -2.40 -0.02 3.39 16 30 H 0.42 4.60 8.83 -92.71 -0.82 3.79 16 31 H 0.04 1.23 7.90 -2.38 -0.02 1.21 16 32 H 0.09 1.76 7.91 -2.39 -0.02 1.74 16 33 H 0.41 5.55 7.78 -92.71 -0.72 4.83 16 34 H 0.15 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.04 1.16 8.10 -2.39 -0.02 1.14 16 37 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 38 H 0.42 2.87 8.49 -92.71 -0.79 2.09 16 39 H 0.42 1.28 8.84 -92.71 -0.82 0.46 16 40 H 0.42 4.08 8.93 -92.71 -0.83 3.25 16 41 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.13 0.81 8.06 -2.39 -0.02 0.79 16 43 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -98.27 397.52 -4.38 -102.64 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -2.88 Total: 22.63 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: 6.19 Total: 19.38 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -8.39 Total: -112.02 kcal Atomic # 8 Polarization: -67.10 SS G_CDS: -0.16 Total: -67.26 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -98.27 -4.38 -102.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535255062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.207 kcal (2) G-P(sol) polarization free energy of solvation -98.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds