Wall clock time and date at job start Wed Apr 1 2020 03:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34226 * 117.00070 * 2 1 4 4 O 1.20831 * 119.99853 * 0.02562 * 3 2 1 5 5 C 1.50691 * 120.00289 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47608 * 180.02562 * 5 3 2 7 7 N 1.46495 * 109.47082 * 180.02562 * 6 5 3 8 8 C 1.36669 * 120.00153 * 269.99571 * 7 6 5 9 9 H 1.08006 * 119.99772 * 140.59704 * 8 7 6 10 10 C 1.39181 * 120.00274 * 320.59538 * 8 7 6 11 11 N 1.31280 * 120.00296 * 161.08531 * 10 8 7 12 12 Si 1.86804 * 119.99856 * 341.09420 * 10 8 7 13 13 H 1.48498 * 109.47097 * 95.50922 * 12 10 8 14 14 H 1.48502 * 109.46896 * 215.50904 * 12 10 8 15 15 H 1.48498 * 109.46827 * 335.50465 * 12 10 8 16 16 C 1.34777 * 120.00114 * 90.00584 * 7 6 5 17 17 O 1.21607 * 119.99769 * 4.89999 * 16 7 6 18 18 C 1.47714 * 120.00389 * 184.90917 * 16 7 6 19 19 C 1.38952 * 121.35939 * 316.55827 * 18 16 7 20 20 C 1.39858 * 119.43045 * 180.02562 * 19 18 16 21 21 O 1.35597 * 118.79565 * 180.02562 * 20 19 18 22 22 N 1.31295 * 122.40280 * 0.26980 * 20 19 18 23 23 C 1.33608 * 122.35402 * 359.44078 * 22 20 19 24 24 C 1.40618 * 121.09026 * 180.27798 * 23 22 20 25 25 C 1.36141 * 119.72925 * 180.26551 * 24 23 22 26 26 C 1.39276 * 121.07303 * 0.02670 * 25 24 23 27 27 C 1.36366 * 120.80045 * 359.96851 * 26 25 24 28 28 C 1.39892 * 119.58877 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.46867 * 300.00183 * 1 2 3 30 30 H 1.08997 * 109.47011 * 59.99545 * 1 2 3 31 31 H 1.08990 * 109.47093 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47339 * 60.00266 * 5 3 2 33 33 H 1.09004 * 109.47504 * 300.00415 * 5 3 2 34 34 H 1.08994 * 109.47040 * 59.99985 * 6 5 3 35 35 H 1.08997 * 109.46706 * 299.99925 * 6 5 3 36 36 H 0.96994 * 120.00460 * 185.01423 * 11 10 8 37 37 H 1.07997 * 120.28291 * 0.04142 * 19 18 16 38 38 H 0.96704 * 114.00292 * 89.99688 * 21 20 19 39 39 H 1.08000 * 120.13872 * 0.24921 * 24 23 22 40 40 H 1.07996 * 119.46232 * 179.97438 * 25 24 23 41 41 H 1.08001 * 119.60071 * 180.02562 * 26 25 24 42 42 H 1.08004 * 120.20951 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0002 2.7421 0.0011 7 7 5.4631 2.8187 0.0011 8 6 6.1456 2.8541 1.1846 9 1 7.0714 2.3079 1.2906 10 6 5.6478 3.5939 2.2532 11 7 6.0679 3.3499 3.4728 12 14 4.3816 4.9339 1.9521 13 1 3.0190 4.3855 2.1708 14 1 4.6190 6.0593 2.8915 15 1 4.5004 5.4221 0.5547 16 6 6.1361 2.8545 -1.1662 17 8 5.5274 2.9132 -2.2173 18 6 7.6128 2.8222 -1.1687 19 6 8.3543 3.5840 -0.2739 20 6 9.7510 3.5230 -0.3122 21 8 10.4619 4.2714 0.5672 22 7 10.3991 2.7712 -1.1716 23 6 9.7705 2.0015 -2.0647 24 6 10.4914 1.2020 -2.9693 25 6 9.8226 0.4323 -3.8714 26 6 8.4306 0.4223 -3.9157 27 6 7.6991 1.1848 -3.0538 28 6 8.3550 1.9872 -2.1141 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.9564 0.7807 -0.8892 33 1 3.9558 0.7809 0.8908 34 1 3.6102 3.2360 0.8910 35 1 3.6108 3.2364 -0.8889 36 1 5.6689 3.8141 4.2252 37 1 7.8563 4.2176 0.4451 38 1 10.6547 3.8211 1.4010 39 1 11.5712 1.1986 -2.9488 40 1 10.3806 -0.1798 -4.5645 41 1 7.9244 -0.1976 -4.6409 42 1 6.6200 1.1695 -3.0963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001544788050.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:56 Heat of formation + Delta-G solvation = -84.351089 kcal Electronic energy + Delta-G solvation = -30151.132931 eV Core-core repulsion = 25869.699613 eV Total energy + Delta-G solvation = -4281.433317 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.63344 -40.29223 -38.92440 -37.98989 -36.46049 -35.42717 -35.37675 -33.08642 -32.44729 -31.16461 -29.75743 -29.38342 -27.73186 -25.50151 -24.93321 -23.53707 -23.12283 -22.05758 -20.62858 -19.75210 -18.68563 -17.81284 -17.64798 -17.16950 -16.65741 -16.65363 -16.41330 -16.11326 -15.39640 -15.21708 -14.63682 -14.51281 -14.21074 -14.03634 -13.96847 -13.63635 -13.35784 -13.18813 -12.93994 -12.80946 -12.62996 -12.36247 -12.14173 -11.86607 -11.70627 -11.35272 -11.29361 -11.16180 -11.08267 -11.02712 -10.74381 -10.43488 -10.33081 -10.06493 -9.93739 -9.66130 -9.36740 -8.78657 -8.37013 -8.15245 -7.91946 -6.71545 -4.38898 0.52065 1.10904 2.07746 2.39411 2.77160 2.93599 3.01918 3.11733 3.18005 3.50819 3.83686 3.90735 3.98867 4.37616 4.64469 4.85682 4.94894 5.01479 5.08797 5.09570 5.15919 5.18420 5.35983 5.38161 5.39937 5.46110 5.54295 5.60854 5.84309 5.87522 5.98904 6.12589 6.15464 6.27408 6.34014 6.42005 6.51336 6.59925 6.73027 6.74823 6.98877 7.06171 7.73103 7.77530 7.89715 7.94641 8.19000 8.59431 8.95977 9.26917 10.33887 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.010364 B = 0.004414 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.991705 B = 6342.261503 C = 8433.884710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.468 3.532 4 O -0.510 6.510 5 C -0.123 4.123 6 C 0.113 3.887 7 N -0.443 5.443 8 C -0.364 4.364 9 H 0.111 0.889 10 C 0.076 3.924 11 N -0.845 5.845 12 Si 0.868 3.132 13 H -0.266 1.266 14 H -0.282 1.282 15 H -0.257 1.257 16 C 0.518 3.482 17 O -0.578 6.578 18 C -0.020 4.020 19 C -0.126 4.126 20 C 0.345 3.655 21 O -0.484 6.484 22 N -0.505 5.505 23 C 0.145 3.855 24 C -0.101 4.101 25 C -0.103 4.103 26 C -0.132 4.132 27 C -0.075 4.075 28 C -0.084 4.084 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.281 0.719 37 H 0.168 0.832 38 H 0.404 0.596 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.084 -7.000 -5.779 9.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.311 3.689 4 O -0.397 6.397 5 C -0.162 4.162 6 C -0.010 4.010 7 N -0.162 5.162 8 C -0.491 4.491 9 H 0.129 0.871 10 C -0.135 4.135 11 N -0.478 5.478 12 Si 0.695 3.305 13 H -0.193 1.193 14 H -0.209 1.209 15 H -0.181 1.181 16 C 0.308 3.692 17 O -0.463 6.463 18 C -0.031 4.031 19 C -0.148 4.148 20 C 0.151 3.849 21 O -0.292 6.292 22 N -0.226 5.226 23 C 0.024 3.976 24 C -0.120 4.120 25 C -0.123 4.123 26 C -0.150 4.150 27 C -0.094 4.094 28 C -0.087 4.087 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.185 0.815 38 H 0.262 0.738 39 H 0.150 0.850 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.288 -6.188 -6.503 8.981 hybrid contribution -1.667 0.440 0.736 1.875 sum -1.379 -5.748 -5.767 8.259 Atomic orbital electron populations 1.23218 0.76914 1.03335 1.02452 1.86532 1.23056 1.33857 1.84369 1.23917 0.92209 0.81102 0.71704 1.90657 1.67352 1.36324 1.45415 1.21761 0.86427 1.01346 1.06618 1.21472 0.82400 0.93612 1.03549 1.43479 1.04035 1.62893 1.05750 1.19122 1.10552 1.31606 0.87838 0.87116 1.25350 0.97042 0.96326 0.94755 1.69586 1.40378 1.39484 0.98350 0.87027 0.81318 0.82240 0.79950 1.19251 1.20883 1.18070 1.17961 0.85960 0.81100 0.84168 1.90682 1.69094 1.54987 1.31521 1.21245 0.94081 0.94743 0.93014 1.22811 0.92656 1.00231 0.99121 1.19200 0.86972 0.88799 0.89920 1.84693 1.75309 1.39998 1.29154 1.66919 1.41970 1.07504 1.06191 1.18325 0.89059 0.95516 0.94680 1.20686 0.99975 0.96535 0.94814 1.20817 0.94468 0.98711 0.98291 1.20900 0.93940 1.00241 0.99924 1.21168 1.01256 0.93746 0.93217 1.19633 0.93294 0.98501 0.97240 0.92020 0.92043 0.88340 0.87473 0.86448 0.90333 0.89594 0.90836 0.81457 0.73815 0.85024 0.85689 0.85798 0.84188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.30 10.57 -39.25 -0.41 -5.72 16 3 C 0.47 8.03 7.96 36.00 0.29 8.32 16 4 O -0.51 -10.02 15.73 -18.75 -0.30 -10.31 16 5 C -0.12 -2.14 6.13 -27.89 -0.17 -2.31 16 6 C 0.11 2.34 3.51 -4.04 -0.01 2.32 16 7 N -0.44 -9.68 2.15 -115.95 -0.25 -9.93 16 8 C -0.36 -8.37 7.10 -15.05 -0.11 -8.48 16 9 H 0.11 2.67 6.72 -52.48 -0.35 2.32 16 10 C 0.08 1.80 5.35 -17.44 -0.09 1.71 16 11 N -0.84 -20.88 13.95 55.51 0.77 -20.11 16 12 Si 0.87 19.31 24.89 -169.99 -4.23 15.08 16 13 H -0.27 -5.94 6.73 56.52 0.38 -5.56 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 16 C 0.52 11.31 6.94 -12.39 -0.09 11.22 16 17 O -0.58 -13.30 14.80 5.27 0.08 -13.22 16 18 C -0.02 -0.41 5.41 -102.50 -0.55 -0.96 16 19 C -0.13 -2.46 7.86 -38.71 -0.30 -2.77 16 20 C 0.34 6.29 7.69 -17.18 -0.13 6.15 16 21 O -0.48 -7.69 13.53 -18.49 -0.25 -7.94 16 22 N -0.51 -9.31 10.28 -11.15 -0.11 -9.43 16 23 C 0.14 2.57 6.62 -84.89 -0.56 2.01 16 24 C -0.10 -1.46 9.99 -39.44 -0.39 -1.86 16 25 C -0.10 -1.28 9.94 -39.95 -0.40 -1.68 16 26 C -0.13 -1.77 9.96 -39.87 -0.40 -2.17 16 27 C -0.08 -1.26 9.27 -39.64 -0.37 -1.63 16 28 C -0.08 -1.57 5.90 -104.71 -0.62 -2.18 16 29 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 30 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.11 1.74 8.14 -51.93 -0.42 1.31 16 33 H 0.12 1.99 8.14 -51.93 -0.42 1.56 16 34 H 0.08 1.73 3.21 -51.93 -0.17 1.56 16 35 H 0.09 1.84 7.31 -51.93 -0.38 1.46 16 36 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 37 H 0.17 3.40 6.52 -52.49 -0.34 3.06 16 38 H 0.40 4.53 9.06 45.56 0.41 4.95 16 39 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.14 2.44 6.28 -52.48 -0.33 2.11 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -29.89 359.30 -5.83 -35.72 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -3.70 Total: 11.30 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -2.84 Total: 9.15 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.41 Total: -39.47 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -0.88 Total: -37.19 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.23 Total: 15.08 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.89 -5.83 -35.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544788050.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.632 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds