Wall clock time and date at job start Wed Apr 1 2020 01:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 N 1.46504 * 109.47054 * 184.99999 * 4 2 1 6 6 C 1.34777 * 120.00071 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00142 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47076 * 179.97438 * 8 6 5 10 10 C 1.76202 * 99.99786 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00495 * 0.02562 * 10 9 8 12 12 C 1.38800 * 120.00098 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99583 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00303 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.46781 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46685 * 120.00530 * 14 12 10 17 17 H 1.48496 * 109.47112 * 240.00327 * 14 12 10 18 18 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 19 19 C 1.46900 * 110.99890 * 274.99873 * 18 2 1 20 20 C 1.50698 * 109.47212 * 179.97438 * 19 18 2 21 21 C 1.38207 * 120.00135 * 259.71929 * 20 19 18 22 22 C 1.38427 * 120.00044 * 179.76910 * 21 20 19 23 23 F 1.35099 * 119.99941 * 180.28067 * 22 21 20 24 24 C 1.38478 * 119.99898 * 0.53428 * 22 21 20 25 25 C 1.38163 * 119.99810 * 359.72205 * 24 22 21 26 26 C 1.38428 * 119.99729 * 80.00370 * 20 19 18 27 27 F 1.35097 * 120.00395 * 359.97384 * 26 20 19 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 32 32 H 1.09002 * 109.46642 * 65.00413 * 4 2 1 33 33 H 0.97000 * 119.99700 * 0.02562 * 5 4 2 34 34 H 1.09001 * 109.47456 * 300.00106 * 8 6 5 35 35 H 1.09002 * 109.47145 * 60.00200 * 8 6 5 36 36 H 0.97009 * 119.99727 * 179.97438 * 13 12 10 37 37 H 1.00901 * 111.00276 * 151.05158 * 18 2 1 38 38 H 1.09002 * 109.47391 * 300.00224 * 19 18 2 39 39 H 1.09005 * 109.47266 * 59.99895 * 19 18 2 40 40 H 1.08001 * 119.99996 * 0.03411 * 21 20 19 41 41 H 1.07999 * 119.99884 * 179.70574 * 24 22 21 42 42 H 1.07995 * 119.99442 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4284 -2.1910 7 8 3.5702 -1.8826 -3.1402 8 6 5.6750 -1.5370 -2.1303 9 16 6.2784 -2.3902 -3.6082 10 6 8.0101 -2.3772 -3.2834 11 1 8.3864 -1.9247 -2.3778 12 6 8.8908 -2.9495 -4.1908 13 7 8.4322 -3.5015 -5.2943 14 14 10.7268 -2.9351 -3.8468 15 1 10.9820 -2.2591 -2.5495 16 1 11.2296 -4.3310 -3.7845 17 1 11.4282 -2.2044 -4.9327 18 7 2.0196 -0.6925 1.1994 19 6 2.0824 0.2225 2.3469 20 6 2.5872 -0.5219 3.5561 21 6 1.6968 -0.9688 4.5139 22 6 2.1600 -1.6567 5.6222 23 9 1.2890 -2.0985 6.5557 24 6 3.5166 -1.8875 5.7767 25 6 4.4073 -1.4361 4.8218 26 6 3.9433 -0.7529 3.7102 27 9 4.8143 -0.3115 2.7766 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6055 -1.7198 -1.2951 32 1 1.7517 -0.1583 -2.1369 33 1 3.9824 -0.4628 -0.4315 34 1 6.1100 -0.5386 -2.0837 35 1 5.9630 -2.1006 -1.2429 36 1 9.0478 -3.9011 -5.9288 37 1 2.9173 -1.1205 1.0288 38 1 2.7588 1.0462 2.1183 39 1 1.0870 0.6163 2.5525 40 1 0.6391 -0.7850 4.3956 41 1 3.8785 -2.4201 6.6438 42 1 5.4653 -1.6157 4.9425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566998307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:38 Heat of formation + Delta-G solvation = -105.233084 kcal Electronic energy + Delta-G solvation = -26629.906012 eV Core-core repulsion = 22371.923619 eV Total energy + Delta-G solvation = -4257.982393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.111 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.34978 -49.34340 -39.71201 -39.24093 -37.49390 -34.32317 -32.70860 -32.42590 -30.88351 -29.98549 -29.31473 -26.37081 -25.57875 -25.16396 -23.47558 -22.03397 -20.95767 -20.42664 -18.16750 -17.97684 -17.67860 -17.61049 -16.59394 -16.45483 -16.18056 -16.04801 -15.72784 -15.32561 -14.84774 -14.83044 -14.80289 -14.78028 -14.26334 -13.99997 -13.61996 -13.29288 -13.22490 -12.95936 -12.89601 -12.69417 -12.63196 -12.37416 -12.20310 -12.01716 -11.72533 -11.37982 -11.18089 -11.07095 -11.01806 -10.75355 -9.80902 -9.68922 -9.43872 -9.08092 -9.05133 -8.94823 -8.85502 -8.23437 -6.49977 -6.21803 -3.92191 0.44394 0.53710 2.82342 3.00415 3.07251 3.21540 3.27782 3.32368 3.59647 3.67360 3.71143 3.84599 4.04473 4.17888 4.20201 4.43429 4.48662 4.61860 4.82679 4.87936 4.97404 5.07621 5.13087 5.13478 5.24691 5.44231 5.45293 5.50854 5.51963 5.55297 5.56692 5.63549 5.66728 5.82351 5.88461 5.98296 6.13415 6.28980 6.50611 6.54778 6.89325 7.59358 7.61254 8.35542 8.57136 9.23706 10.85676 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.011520 B = 0.002427 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.893405 B =11533.294068 C =13462.543480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.074 3.926 3 H 0.053 0.947 4 C 0.118 3.882 5 N -0.743 5.743 6 C 0.534 3.466 7 O -0.514 6.514 8 C -0.154 4.154 9 S -0.060 6.060 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.680 5.680 19 C 0.096 3.904 20 C -0.087 4.087 21 C -0.107 4.107 22 C 0.089 3.911 23 F -0.135 7.135 24 C -0.125 4.125 25 C -0.122 4.122 26 C 0.095 3.905 27 F -0.131 7.131 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.393 0.607 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.268 0.732 37 H 0.347 0.653 38 H 0.050 0.950 39 H 0.091 0.909 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.766 9.175 23.625 29.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.036 4.036 3 H 0.071 0.929 4 C -0.007 4.007 5 N -0.399 5.399 6 C 0.320 3.680 7 O -0.388 6.388 8 C -0.305 4.305 9 S 0.167 5.833 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 N -0.315 5.315 19 C -0.032 4.032 20 C -0.088 4.088 21 C -0.126 4.126 22 C 0.069 3.931 23 F -0.114 7.114 24 C -0.144 4.144 25 C -0.141 4.141 26 C 0.075 3.925 27 F -0.110 7.110 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.227 0.773 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.168 0.832 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.364 8.077 21.997 28.581 hybrid contribution 2.949 1.175 1.549 3.533 sum -13.415 9.251 23.547 28.635 Atomic orbital electron populations 1.21735 0.93133 1.03055 1.01672 1.21820 0.96979 0.96182 0.88627 0.92860 1.21517 0.80481 1.01724 0.96928 1.46067 1.07141 1.62218 1.24496 1.20294 0.89503 0.76642 0.81581 1.90708 1.69877 1.45769 1.32411 1.23535 0.93485 1.05674 1.07758 1.85399 1.04649 1.73105 1.20139 1.22906 0.91496 1.44190 1.09663 0.90886 1.25000 0.99609 0.94558 0.94475 1.70033 1.35296 1.35545 1.09407 0.86111 0.82977 0.77992 0.78388 1.19617 1.20562 1.20571 1.60599 1.34323 1.32584 1.03966 1.20897 1.01639 0.92981 0.87692 1.19633 0.91077 1.00754 0.97382 1.20888 1.01013 0.98266 0.92449 1.17662 0.87371 0.99503 0.88516 1.91529 1.68798 1.87420 1.63631 1.21035 0.91085 1.01500 1.00743 1.21036 1.01520 0.98608 0.92909 1.17609 0.86806 0.99475 0.88617 1.91539 1.68581 1.87238 1.63614 0.92402 0.91941 0.91394 0.90508 0.90694 0.77296 0.89266 0.89193 0.92240 0.83235 0.93220 0.89037 0.83578 0.83640 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.41 37.16 0.35 -0.62 16 2 C 0.07 0.61 2.81 -67.71 -0.19 0.42 16 3 H 0.05 0.41 7.80 -51.93 -0.40 0.01 16 4 C 0.12 1.34 5.31 -4.04 -0.02 1.32 16 5 N -0.74 -9.88 4.99 -60.30 -0.30 -10.18 16 6 C 0.53 9.98 7.85 -10.99 -0.09 9.89 16 7 O -0.51 -11.69 15.86 5.56 0.09 -11.61 16 8 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.53 -15.26 9.50 30.94 0.29 -14.97 16 11 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 14 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 N -0.68 -5.80 6.29 -107.99 -0.68 -6.48 16 19 C 0.10 0.68 5.33 -4.98 -0.03 0.65 16 20 C -0.09 -0.67 5.40 -104.56 -0.56 -1.23 16 21 C -0.11 -0.76 9.65 -39.52 -0.38 -1.14 16 22 C 0.09 0.67 7.30 -39.42 -0.29 0.39 16 23 F -0.14 -1.14 17.27 2.25 0.04 -1.10 16 24 C -0.12 -0.82 10.02 -39.52 -0.40 -1.22 16 25 C -0.12 -0.86 10.02 -39.52 -0.40 -1.26 16 26 C 0.09 0.80 7.24 -39.42 -0.29 0.51 16 27 F -0.13 -1.27 16.66 2.25 0.04 -1.23 16 28 H 0.06 0.35 7.45 -51.93 -0.39 -0.04 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.39 4.30 7.37 -40.82 -0.30 4.00 16 34 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 35 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.35 3.36 6.70 -39.29 -0.26 3.10 16 38 H 0.05 0.35 7.86 -51.93 -0.41 -0.06 16 39 H 0.09 0.52 7.29 -51.93 -0.38 0.14 16 40 H 0.15 0.81 8.03 -52.49 -0.42 0.39 16 41 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 380.82 15.07 5.74 5.74 Total: -1.00 -34.27 380.82 -8.94 -43.21 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.49 Total: 2.72 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -1.87 Total: -8.17 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.25 Total: -42.16 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.08 Total: -2.33 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.27 -8.94 -43.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566998307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.023 kcal (2) G-P(sol) polarization free energy of solvation -34.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds