Wall clock time and date at job start Wed Apr 1 2020 01:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 N 1.46504 * 109.47054 * 184.99999 * 4 2 1 6 6 C 1.34777 * 120.00071 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00142 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47076 * 179.97438 * 8 6 5 10 10 C 1.76202 * 99.99786 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00495 * 0.02562 * 10 9 8 12 12 C 1.38800 * 120.00098 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99583 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00303 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.46781 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46685 * 120.00530 * 14 12 10 17 17 H 1.48496 * 109.47112 * 240.00327 * 14 12 10 18 18 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 19 19 C 1.46900 * 110.99890 * 274.99873 * 18 2 1 20 20 C 1.50698 * 109.47212 * 179.97438 * 19 18 2 21 21 C 1.38207 * 120.00135 * 259.71929 * 20 19 18 22 22 C 1.38427 * 120.00044 * 179.76910 * 21 20 19 23 23 F 1.35099 * 119.99941 * 180.28067 * 22 21 20 24 24 C 1.38478 * 119.99898 * 0.53428 * 22 21 20 25 25 C 1.38163 * 119.99810 * 359.72205 * 24 22 21 26 26 C 1.38428 * 119.99729 * 80.00370 * 20 19 18 27 27 F 1.35097 * 120.00395 * 359.97384 * 26 20 19 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 32 32 H 1.09002 * 109.46642 * 65.00413 * 4 2 1 33 33 H 0.97000 * 119.99700 * 0.02562 * 5 4 2 34 34 H 1.09001 * 109.47456 * 300.00106 * 8 6 5 35 35 H 1.09002 * 109.47145 * 60.00200 * 8 6 5 36 36 H 0.97009 * 119.99727 * 179.97438 * 13 12 10 37 37 H 1.00901 * 111.00276 * 151.05158 * 18 2 1 38 38 H 1.09002 * 109.47391 * 300.00224 * 19 18 2 39 39 H 1.09005 * 109.47266 * 59.99895 * 19 18 2 40 40 H 1.08001 * 119.99996 * 0.03411 * 21 20 19 41 41 H 1.07999 * 119.99884 * 179.70574 * 24 22 21 42 42 H 1.07995 * 119.99442 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4284 -2.1910 7 8 3.5702 -1.8826 -3.1402 8 6 5.6750 -1.5370 -2.1303 9 16 6.2784 -2.3902 -3.6082 10 6 8.0101 -2.3772 -3.2834 11 1 8.3864 -1.9247 -2.3778 12 6 8.8908 -2.9495 -4.1908 13 7 8.4322 -3.5015 -5.2943 14 14 10.7268 -2.9351 -3.8468 15 1 10.9820 -2.2591 -2.5495 16 1 11.2296 -4.3310 -3.7845 17 1 11.4282 -2.2044 -4.9327 18 7 2.0196 -0.6925 1.1994 19 6 2.0824 0.2225 2.3469 20 6 2.5872 -0.5219 3.5561 21 6 1.6968 -0.9688 4.5139 22 6 2.1600 -1.6567 5.6222 23 9 1.2890 -2.0985 6.5557 24 6 3.5166 -1.8875 5.7767 25 6 4.4073 -1.4361 4.8218 26 6 3.9433 -0.7529 3.7102 27 9 4.8143 -0.3115 2.7766 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6055 -1.7198 -1.2951 32 1 1.7517 -0.1583 -2.1369 33 1 3.9824 -0.4628 -0.4315 34 1 6.1100 -0.5386 -2.0837 35 1 5.9630 -2.1006 -1.2429 36 1 9.0478 -3.9011 -5.9288 37 1 2.9173 -1.1205 1.0288 38 1 2.7588 1.0462 2.1183 39 1 1.0870 0.6163 2.5525 40 1 0.6391 -0.7850 4.3956 41 1 3.8785 -2.4201 6.6438 42 1 5.4653 -1.6157 4.9425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566998307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:37 Heat of formation + Delta-G solvation = -128.169371 kcal Electronic energy + Delta-G solvation = -26630.900604 eV Core-core repulsion = 22371.923619 eV Total energy + Delta-G solvation = -4258.976985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.00369 -49.94368 -40.82915 -40.04231 -38.37782 -35.35282 -34.58952 -33.54353 -31.54971 -30.97149 -30.33427 -27.75446 -27.06030 -26.06421 -24.02516 -22.61434 -21.84640 -21.68754 -19.88078 -18.70596 -18.42098 -18.22495 -17.86918 -17.45153 -17.18825 -16.88766 -16.82267 -16.39741 -16.33982 -15.98759 -15.86187 -15.42660 -15.34146 -14.87476 -14.63539 -14.50758 -14.27037 -14.05743 -13.83104 -13.59231 -13.29891 -13.23467 -13.16781 -13.01719 -12.91665 -12.84709 -12.62629 -12.54093 -11.94081 -11.86807 -11.70244 -11.16426 -11.01305 -10.28922 -10.24033 -10.18831 -9.64788 -9.46915 -8.67632 -8.35440 -6.13497 -0.12431 0.00911 1.25575 1.41110 1.45966 1.56370 1.57586 2.19846 2.26628 2.29098 2.98801 3.03194 3.13799 3.21561 3.30969 3.50395 3.64811 3.66711 3.92507 3.99550 4.09622 4.15550 4.26099 4.30580 4.36768 4.47911 4.52385 4.62318 4.75177 4.82687 4.92673 4.94856 5.00103 5.01916 5.03177 5.12503 5.29754 5.41591 5.44854 5.74620 5.90827 6.16879 6.19492 6.36196 7.06007 7.16102 8.74031 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.011520 B = 0.002427 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.893405 B =11533.294068 C =13462.543480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.084 3.916 3 H 0.067 0.933 4 C 0.117 3.883 5 N -0.717 5.717 6 C 0.536 3.464 7 O -0.561 6.561 8 C -0.131 4.131 9 S -0.148 6.148 10 C -0.545 4.545 11 H 0.082 0.918 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 0.999 3.001 15 H -0.257 1.257 16 H -0.274 1.274 17 H -0.274 1.274 18 N -0.687 5.687 19 C 0.098 3.902 20 C -0.092 4.092 21 C -0.107 4.107 22 C 0.076 3.924 23 F -0.142 7.142 24 C -0.122 4.122 25 C -0.126 4.126 26 C 0.077 3.923 27 F -0.142 7.142 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.408 0.592 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.271 0.729 37 H 0.339 0.661 38 H 0.053 0.947 39 H 0.109 0.891 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.456 10.435 25.978 31.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.025 4.025 3 H 0.085 0.915 4 C -0.007 4.007 5 N -0.372 5.372 6 C 0.322 3.678 7 O -0.439 6.439 8 C -0.282 4.282 9 S 0.079 5.921 10 C -0.693 4.693 11 H 0.100 0.900 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.821 3.179 15 H -0.180 1.180 16 H -0.199 1.199 17 H -0.199 1.199 18 N -0.321 5.321 19 C -0.030 4.030 20 C -0.093 4.093 21 C -0.126 4.126 22 C 0.057 3.943 23 F -0.121 7.121 24 C -0.141 4.141 25 C -0.144 4.144 26 C 0.057 3.943 27 F -0.121 7.121 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.245 0.755 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.158 0.842 38 H 0.071 0.929 39 H 0.127 0.873 40 H 0.179 0.821 41 H 0.183 0.817 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.079 9.372 24.410 30.695 hybrid contribution 2.740 0.817 0.925 3.005 sum -13.339 10.189 25.335 30.391 Atomic orbital electron populations 1.21725 0.91890 1.02814 1.02850 1.21768 0.97754 0.96119 0.86883 0.91490 1.21670 0.78707 1.01492 0.98829 1.45797 1.08095 1.60026 1.23239 1.20025 0.88868 0.76861 0.82049 1.90697 1.70409 1.48227 1.34553 1.23375 0.94729 1.05772 1.04315 1.85566 1.05905 1.75063 1.25600 1.23224 0.91619 1.44336 1.10105 0.89988 1.26139 1.05253 0.93797 0.94028 1.70193 1.37338 1.36578 1.10647 0.84895 0.75839 0.78314 0.78837 1.18048 1.19909 1.19894 1.60646 1.33800 1.33206 1.04404 1.20961 1.02705 0.92570 0.86783 1.19707 0.90873 1.00970 0.97756 1.21058 1.01747 0.97742 0.92050 1.17869 0.87750 0.99983 0.88699 1.91513 1.69060 1.87576 1.63906 1.21266 0.90683 1.00990 1.01147 1.21240 1.02411 0.98213 0.92549 1.17884 0.87135 1.00301 0.89002 1.91505 1.68958 1.87502 1.64087 0.90760 0.91245 0.92360 0.91877 0.90928 0.75501 0.87311 0.87388 0.91977 0.84188 0.92935 0.87295 0.82121 0.81711 0.82054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 9.41 71.98 0.68 -0.90 16 2 C 0.08 1.21 2.81 44.92 0.13 1.33 16 3 H 0.07 0.82 7.80 -2.39 -0.02 0.80 16 4 C 0.12 2.54 5.31 86.38 0.46 3.00 16 5 N -0.72 -18.14 4.99 -463.07 -2.31 -20.45 16 6 C 0.54 19.90 7.85 87.65 0.69 20.59 16 7 O -0.56 -26.10 15.86 -3.03 -0.05 -26.15 16 8 C -0.13 -5.23 6.16 71.23 0.44 -4.79 16 9 S -0.15 -8.29 20.57 -56.49 -1.16 -9.46 16 10 C -0.55 -31.25 9.50 67.95 0.65 -30.60 16 11 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 12 C 0.01 0.72 5.49 84.86 0.47 1.18 16 13 N -0.91 -56.13 13.22 21.65 0.29 -55.85 16 14 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 15 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 18 N -0.69 -10.32 6.29 -495.56 -3.12 -13.44 16 19 C 0.10 1.14 5.33 85.56 0.46 1.60 16 20 C -0.09 -1.24 5.40 -19.83 -0.11 -1.35 16 21 C -0.11 -1.33 9.65 22.31 0.22 -1.11 16 22 C 0.08 1.04 7.30 22.37 0.16 1.21 16 23 F -0.14 -2.21 17.27 44.97 0.78 -1.43 16 24 C -0.12 -1.41 10.02 22.31 0.22 -1.19 16 25 C -0.13 -1.59 10.02 22.31 0.22 -1.37 16 26 C 0.08 1.19 7.24 22.37 0.16 1.35 16 27 F -0.14 -2.56 16.66 44.97 0.75 -1.81 16 28 H 0.07 0.66 7.45 -2.39 -0.02 0.64 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.41 8.08 7.37 -92.71 -0.68 7.40 16 34 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 35 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 36 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 37 H 0.34 5.98 6.70 -89.69 -0.60 5.38 16 38 H 0.05 0.60 7.86 -2.39 -0.02 0.58 16 39 H 0.11 0.89 7.29 -2.38 -0.02 0.87 16 40 H 0.16 1.42 8.03 -2.91 -0.02 1.40 16 41 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -76.06 380.82 1.82 -74.23 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -0.22 Total: 19.68 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 4.84 Total: -11.06 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -5.14 Total: -89.73 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.05 Total: -26.15 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 1.53 Total: -3.25 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.46 kcal Total: -76.06 1.82 -74.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566998307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.935 kcal (2) G-P(sol) polarization free energy of solvation -76.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds