Wall clock time and date at job start Wed Apr 1 2020 03:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34223 * 116.99963 * 2 1 4 4 O 1.20823 * 120.00157 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00045 * 180.02562 * 3 2 1 6 6 C 1.52991 * 109.47260 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47134 * 180.02562 * 6 5 3 8 8 C 1.36902 * 119.99636 * 263.09066 * 7 6 5 9 9 H 1.08001 * 119.99542 * 137.88775 * 8 7 6 10 10 C 1.39029 * 119.99946 * 317.87701 * 8 7 6 11 11 N 1.31377 * 120.00259 * 343.97766 * 10 8 7 12 12 Si 1.86802 * 119.99701 * 163.97681 * 10 8 7 13 13 H 1.48494 * 109.47312 * 60.00153 * 12 10 8 14 14 H 1.48497 * 109.47215 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47007 * 300.00171 * 12 10 8 16 16 C 1.34768 * 120.00291 * 83.09111 * 7 6 5 17 17 O 1.21618 * 119.99939 * 3.19167 * 16 7 6 18 18 C 1.47557 * 120.00300 * 183.19470 * 16 7 6 19 19 C 1.40143 * 120.03925 * 327.58324 * 18 16 7 20 20 C 1.36359 * 120.62969 * 179.97438 * 19 18 16 21 21 C 1.39409 * 120.27157 * 359.78328 * 20 19 18 22 22 N 1.37733 * 132.84847 * 179.62203 * 21 20 19 23 23 H 0.97004 * 124.60341 * 0.64770 * 22 21 20 24 24 C 1.34725 * 110.79853 * 180.38304 * 22 21 20 25 25 C 1.37802 * 109.64970 * 0.24261 * 24 22 21 26 26 C 1.41746 * 126.94626 * 179.97438 * 25 24 22 27 27 O 1.21396 * 120.00379 * 180.02562 * 26 25 24 28 28 C 1.40562 * 119.53429 * 0.47101 * 21 20 19 29 29 C 1.38822 * 120.22650 * 359.50240 * 28 21 20 30 30 H 1.09000 * 109.47367 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46793 * 299.99493 * 1 2 3 32 32 H 1.08992 * 109.47360 * 59.99527 * 1 2 3 33 33 H 1.09000 * 109.46729 * 60.00049 * 5 3 2 34 34 H 1.08998 * 109.46835 * 300.00302 * 5 3 2 35 35 H 1.09007 * 109.46822 * 60.00154 * 6 5 3 36 36 H 1.08997 * 109.47424 * 300.00533 * 6 5 3 37 37 H 0.96997 * 119.99507 * 179.97438 * 11 10 8 38 38 H 1.08006 * 119.68076 * 359.97438 * 19 18 16 39 39 H 1.08000 * 119.86109 * 180.02562 * 20 19 18 40 40 H 1.08006 * 125.17714 * 180.22677 * 24 22 21 41 41 H 1.08004 * 119.99297 * 0.02562 * 26 25 24 42 42 H 1.07996 * 120.29208 * 180.23323 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4631 2.8186 -0.0023 8 6 6.1401 2.9970 1.1742 9 1 7.0418 2.4353 1.3688 10 6 5.6670 3.9014 2.1182 11 7 4.7748 4.8027 1.7751 12 14 6.2999 3.8350 3.8745 13 1 7.7696 4.0472 3.8794 14 1 5.6433 4.8973 4.6778 15 1 5.9896 2.5072 4.4626 16 6 6.1425 2.7135 -1.1614 17 8 5.5395 2.6134 -2.2128 18 6 7.6181 2.7200 -1.1551 19 6 8.3122 3.4653 -0.1925 20 6 9.6756 3.4794 -0.1751 21 6 10.3980 2.7463 -1.1154 22 7 11.7470 2.5810 -1.3389 23 1 12.4477 2.9916 -0.8083 24 6 11.9615 1.7670 -2.3908 25 6 10.7540 1.3601 -2.9156 26 6 10.5534 0.5016 -4.0255 27 8 9.4268 0.2248 -4.3830 28 6 9.7112 1.9998 -2.0884 29 6 8.3231 1.9845 -2.1063 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 3.9557 0.7809 -0.8908 34 1 3.9564 0.7805 0.8891 35 1 3.6107 3.2363 0.8890 36 1 3.6101 3.2359 -0.8910 37 1 4.4446 5.4334 2.4339 38 1 7.7620 4.0340 0.5426 39 1 10.1980 4.0579 0.5725 40 1 12.9321 1.4775 -2.7658 41 1 11.4030 0.0938 -4.5531 42 1 7.7943 1.4083 -2.8511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001587592910.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:31 Heat of formation + Delta-G solvation = -82.557678 kcal Electronic energy + Delta-G solvation = -29528.777225 eV Core-core repulsion = 25247.421676 eV Total energy + Delta-G solvation = -4281.355549 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.28904 -40.03502 -38.87487 -38.23981 -36.34244 -35.97505 -34.99133 -32.08802 -31.91975 -30.92772 -29.31888 -28.98463 -27.42757 -25.20745 -24.32339 -24.04353 -22.33625 -21.67912 -20.30402 -19.69418 -19.08252 -17.77087 -17.58659 -17.05123 -16.47114 -16.18036 -16.12758 -15.69257 -15.17444 -14.79088 -14.73897 -14.59968 -14.29132 -13.79700 -13.64904 -13.56780 -13.40046 -13.28992 -12.96541 -12.73886 -12.29762 -12.23243 -12.07338 -11.91867 -11.62411 -11.25183 -11.20437 -11.01312 -10.74091 -10.54125 -10.51860 -10.49926 -10.09787 -9.99284 -9.46463 -9.44601 -9.13805 -8.59506 -7.88806 -7.65305 -7.46421 -6.47199 -4.21156 0.98893 1.80033 2.06020 2.69160 3.01928 3.04057 3.08713 3.15204 3.16032 3.40325 3.83116 4.01734 4.46685 4.56698 4.68316 4.74458 4.92713 5.04178 5.18031 5.26497 5.32596 5.33493 5.51834 5.65724 5.75692 5.84200 5.87018 5.95387 6.07564 6.11381 6.21289 6.30109 6.62313 6.66314 6.75521 6.85414 6.88877 7.04415 7.22189 7.28184 7.36536 7.37707 7.52892 7.83644 7.86741 8.19835 8.26745 8.93838 9.38517 9.82385 10.54584 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.010077 B = 0.003714 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.898349 B = 7536.278909 C = 9749.981501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.128 4.128 6 C 0.135 3.865 7 N -0.432 5.432 8 C -0.348 4.348 9 H 0.096 0.904 10 C 0.045 3.955 11 N -0.850 5.850 12 Si 0.912 3.088 13 H -0.269 1.269 14 H -0.282 1.282 15 H -0.271 1.271 16 C 0.517 3.483 17 O -0.592 6.592 18 C -0.105 4.105 19 C -0.049 4.049 20 C -0.149 4.149 21 C 0.080 3.920 22 N -0.568 5.568 23 H 0.417 0.583 24 C 0.122 3.878 25 C -0.287 4.287 26 C 0.400 3.600 27 O -0.475 6.475 28 C -0.078 4.078 29 C -0.033 4.033 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.274 0.726 38 H 0.172 0.828 39 H 0.118 0.882 40 H 0.181 0.819 41 H 0.088 0.912 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.376 -5.955 -0.658 12.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.310 3.690 4 O -0.392 6.392 5 C -0.167 4.167 6 C 0.011 3.989 7 N -0.149 5.149 8 C -0.476 4.476 9 H 0.113 0.887 10 C -0.163 4.163 11 N -0.484 5.484 12 Si 0.737 3.263 13 H -0.194 1.194 14 H -0.208 1.208 15 H -0.196 1.196 16 C 0.306 3.694 17 O -0.478 6.478 18 C -0.109 4.109 19 C -0.068 4.068 20 C -0.169 4.169 21 C -0.024 4.024 22 N -0.168 5.168 23 H 0.254 0.746 24 C -0.014 4.014 25 C -0.297 4.297 26 C 0.262 3.738 27 O -0.350 6.350 28 C -0.081 4.081 29 C -0.053 4.053 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.189 0.811 39 H 0.136 0.864 40 H 0.198 0.802 41 H 0.104 0.896 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.138 -5.599 -1.176 11.640 hybrid contribution 0.674 0.294 1.382 1.565 sum 10.811 -5.305 0.206 12.044 Atomic orbital electron populations 1.23167 0.77379 1.03021 1.02326 1.86542 1.22736 1.34407 1.84640 1.24050 0.92355 0.80888 0.71705 1.90651 1.67269 1.36211 1.45101 1.21941 0.85961 1.03385 1.05373 1.21081 0.82084 0.90650 1.05043 1.43178 1.04338 1.62083 1.05342 1.19449 1.11324 1.22738 0.94101 0.88691 1.25484 0.96795 0.93840 1.00155 1.69895 1.28703 1.14763 1.35026 0.86244 0.79283 0.78367 0.82362 1.19439 1.20772 1.19598 1.18301 0.86691 0.80458 0.83910 1.90659 1.70108 1.55632 1.31396 1.19903 0.94263 0.99968 0.96721 1.21900 0.92326 0.96036 0.96529 1.19837 0.94066 1.03204 0.99822 1.18516 0.82251 1.02119 0.99530 1.41398 1.06775 1.41199 1.27414 0.74599 1.22380 0.98977 0.91737 0.88266 1.20468 0.92104 1.11708 1.05384 1.21662 0.92124 0.77940 0.82083 1.90579 1.28086 1.52760 1.63595 1.18715 0.92809 1.00269 0.96345 1.20702 0.91128 0.96588 0.96852 0.88634 0.92189 0.92155 0.88168 0.87771 0.87215 0.91562 0.91543 0.81085 0.86355 0.80183 0.89616 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.13 10.57 -39.24 -0.41 -6.55 16 3 C 0.47 9.14 7.96 36.01 0.29 9.43 16 4 O -0.51 -11.14 15.73 -18.75 -0.29 -11.43 16 5 C -0.13 -2.58 6.08 -27.89 -0.17 -2.75 16 6 C 0.14 3.24 4.14 -4.05 -0.02 3.23 16 7 N -0.43 -10.57 2.50 -115.99 -0.29 -10.86 16 8 C -0.35 -8.18 6.04 -14.99 -0.09 -8.28 16 9 H 0.10 2.14 6.36 -52.49 -0.33 1.81 16 10 C 0.05 1.06 4.90 -17.45 -0.09 0.98 16 11 N -0.85 -21.55 11.57 55.50 0.64 -20.90 16 12 Si 0.91 18.13 29.58 -169.99 -5.03 13.10 16 13 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 14 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 15 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 16 C 0.52 12.91 7.34 -12.46 -0.09 12.82 16 17 O -0.59 -16.26 16.43 5.26 0.09 -16.18 16 18 C -0.10 -2.31 5.52 -104.95 -0.58 -2.88 16 19 C -0.05 -0.96 7.70 -39.54 -0.30 -1.26 16 20 C -0.15 -2.38 10.00 -39.82 -0.40 -2.78 16 21 C 0.08 1.20 7.24 -83.90 -0.61 0.59 16 22 N -0.57 -5.59 5.92 -10.25 -0.06 -5.65 16 23 H 0.42 2.50 8.96 -40.82 -0.37 2.13 16 24 C 0.12 1.08 11.82 -16.44 -0.19 0.88 16 25 C -0.29 -3.88 6.13 -104.86 -0.64 -4.52 16 26 C 0.40 5.21 11.44 32.07 0.37 5.58 16 27 O -0.47 -8.65 16.81 5.46 0.09 -8.56 16 28 C -0.08 -1.37 6.23 -104.95 -0.65 -2.03 16 29 C -0.03 -0.68 9.35 -38.94 -0.36 -1.05 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.75 8.13 -51.92 -0.42 0.32 16 32 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 33 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 34 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 35 H 0.11 2.80 5.75 -51.93 -0.30 2.50 16 36 H 0.07 1.72 7.55 -51.93 -0.39 1.33 16 37 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 38 H 0.17 3.60 5.38 -52.48 -0.28 3.32 16 39 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 40 H 0.18 0.60 8.06 -52.48 -0.42 0.18 16 41 H 0.09 0.67 8.06 -52.48 -0.42 0.25 16 42 H 0.13 3.00 7.28 -52.49 -0.38 2.62 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -34.47 367.34 -6.78 -41.25 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -4.57 Total: 10.77 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -2.48 Total: 9.47 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.29 Total: -37.41 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -0.53 Total: -42.71 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.47 -6.78 -41.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587592910.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.307 kcal (2) G-P(sol) polarization free energy of solvation -34.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds