Wall clock time and date at job start Wed Apr 1 2020 03:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34223 * 116.99963 * 2 1 4 4 O 1.20823 * 120.00157 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00045 * 180.02562 * 3 2 1 6 6 C 1.52991 * 109.47260 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47134 * 180.02562 * 6 5 3 8 8 C 1.36902 * 119.99636 * 263.09066 * 7 6 5 9 9 H 1.08001 * 119.99542 * 137.88775 * 8 7 6 10 10 C 1.39029 * 119.99946 * 317.87701 * 8 7 6 11 11 N 1.31377 * 120.00259 * 343.97766 * 10 8 7 12 12 Si 1.86802 * 119.99701 * 163.97681 * 10 8 7 13 13 H 1.48494 * 109.47312 * 60.00153 * 12 10 8 14 14 H 1.48497 * 109.47215 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47007 * 300.00171 * 12 10 8 16 16 C 1.34768 * 120.00291 * 83.09111 * 7 6 5 17 17 O 1.21618 * 119.99939 * 3.19167 * 16 7 6 18 18 C 1.47557 * 120.00300 * 183.19470 * 16 7 6 19 19 C 1.40143 * 120.03925 * 327.58324 * 18 16 7 20 20 C 1.36359 * 120.62969 * 179.97438 * 19 18 16 21 21 C 1.39409 * 120.27157 * 359.78328 * 20 19 18 22 22 N 1.37733 * 132.84847 * 179.62203 * 21 20 19 23 23 H 0.97004 * 124.60341 * 0.64770 * 22 21 20 24 24 C 1.34725 * 110.79853 * 180.38304 * 22 21 20 25 25 C 1.37802 * 109.64970 * 0.24261 * 24 22 21 26 26 C 1.41746 * 126.94626 * 179.97438 * 25 24 22 27 27 O 1.21396 * 120.00379 * 180.02562 * 26 25 24 28 28 C 1.40562 * 119.53429 * 0.47101 * 21 20 19 29 29 C 1.38822 * 120.22650 * 359.50240 * 28 21 20 30 30 H 1.09000 * 109.47367 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46793 * 299.99493 * 1 2 3 32 32 H 1.08992 * 109.47360 * 59.99527 * 1 2 3 33 33 H 1.09000 * 109.46729 * 60.00049 * 5 3 2 34 34 H 1.08998 * 109.46835 * 300.00302 * 5 3 2 35 35 H 1.09007 * 109.46822 * 60.00154 * 6 5 3 36 36 H 1.08997 * 109.47424 * 300.00533 * 6 5 3 37 37 H 0.96997 * 119.99507 * 179.97438 * 11 10 8 38 38 H 1.08006 * 119.68076 * 359.97438 * 19 18 16 39 39 H 1.08000 * 119.86109 * 180.02562 * 20 19 18 40 40 H 1.08006 * 125.17714 * 180.22677 * 24 22 21 41 41 H 1.08004 * 119.99297 * 0.02562 * 26 25 24 42 42 H 1.07996 * 120.29208 * 180.23323 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4631 2.8186 -0.0023 8 6 6.1401 2.9970 1.1742 9 1 7.0418 2.4353 1.3688 10 6 5.6670 3.9014 2.1182 11 7 4.7748 4.8027 1.7751 12 14 6.2999 3.8350 3.8745 13 1 7.7696 4.0472 3.8794 14 1 5.6433 4.8973 4.6778 15 1 5.9896 2.5072 4.4626 16 6 6.1425 2.7135 -1.1614 17 8 5.5395 2.6134 -2.2128 18 6 7.6181 2.7200 -1.1551 19 6 8.3122 3.4653 -0.1925 20 6 9.6756 3.4794 -0.1751 21 6 10.3980 2.7463 -1.1154 22 7 11.7470 2.5810 -1.3389 23 1 12.4477 2.9916 -0.8083 24 6 11.9615 1.7670 -2.3908 25 6 10.7540 1.3601 -2.9156 26 6 10.5534 0.5016 -4.0255 27 8 9.4268 0.2248 -4.3830 28 6 9.7112 1.9998 -2.0884 29 6 8.3231 1.9845 -2.1063 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 3.9557 0.7809 -0.8908 34 1 3.9564 0.7805 0.8891 35 1 3.6107 3.2363 0.8890 36 1 3.6101 3.2359 -0.8910 37 1 4.4446 5.4334 2.4339 38 1 7.7620 4.0340 0.5426 39 1 10.1980 4.0579 0.5725 40 1 12.9321 1.4775 -2.7658 41 1 11.4030 0.0938 -4.5531 42 1 7.7943 1.4083 -2.8511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001587592910.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:30 Heat of formation + Delta-G solvation = -106.538036 kcal Electronic energy + Delta-G solvation = -29529.817092 eV Core-core repulsion = 25247.421676 eV Total energy + Delta-G solvation = -4282.395415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.40672 -41.61673 -40.64429 -39.34149 -37.80784 -37.46036 -36.91566 -33.92940 -33.08413 -32.68251 -30.66976 -30.26463 -28.68414 -27.05477 -25.83840 -25.15025 -23.80620 -22.96794 -21.87003 -21.21723 -20.52145 -19.23174 -18.85515 -18.57413 -18.00957 -17.66997 -17.62013 -17.01668 -16.57691 -16.43815 -16.09519 -15.83883 -15.54022 -15.51875 -15.13460 -15.03501 -14.59562 -14.57808 -14.54480 -14.24760 -13.92430 -13.71951 -13.56303 -13.29619 -13.11671 -12.84792 -12.74383 -12.69370 -12.36063 -12.11690 -12.01605 -11.94234 -11.83050 -11.64947 -11.02036 -10.64502 -10.52356 -10.49470 -9.54111 -9.21735 -8.71155 -8.30333 -6.11037 -0.14448 0.47088 0.83183 1.07578 1.46678 1.52514 1.59878 1.62717 2.06272 2.12744 2.33174 2.46914 2.88649 2.95447 3.18756 3.71211 3.78056 3.82165 3.99264 4.02561 4.15294 4.25835 4.28614 4.29268 4.35720 4.38860 4.53891 4.54358 4.65680 4.74025 4.80999 4.90679 5.07814 5.19843 5.30507 5.32205 5.40890 5.47210 5.61002 5.63773 5.77646 5.94030 6.13700 6.38741 6.62060 6.64893 6.97924 7.06750 7.47007 7.92511 8.73079 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.010077 B = 0.003714 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.898349 B = 7536.278909 C = 9749.981501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.476 3.524 4 O -0.535 6.535 5 C -0.118 4.118 6 C 0.142 3.858 7 N -0.436 5.436 8 C -0.351 4.351 9 H 0.106 0.894 10 C 0.006 3.994 11 N -0.892 5.892 12 Si 0.981 3.019 13 H -0.248 1.248 14 H -0.288 1.288 15 H -0.267 1.267 16 C 0.499 3.501 17 O -0.637 6.637 18 C -0.132 4.132 19 C -0.073 4.073 20 C -0.124 4.124 21 C 0.083 3.917 22 N -0.546 5.546 23 H 0.444 0.556 24 C 0.198 3.802 25 C -0.343 4.343 26 C 0.402 3.598 27 O -0.548 6.548 28 C -0.101 4.101 29 C -0.055 4.055 30 H 0.139 0.861 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.094 0.906 36 H 0.030 0.970 37 H 0.274 0.726 38 H 0.152 0.848 39 H 0.158 0.842 40 H 0.258 0.742 41 H 0.155 0.845 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.803 -7.068 0.921 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.320 3.680 4 O -0.425 6.425 5 C -0.157 4.157 6 C 0.018 3.982 7 N -0.153 5.153 8 C -0.478 4.478 9 H 0.123 0.877 10 C -0.198 4.198 11 N -0.528 5.528 12 Si 0.803 3.197 13 H -0.171 1.171 14 H -0.214 1.214 15 H -0.192 1.192 16 C 0.291 3.709 17 O -0.526 6.526 18 C -0.136 4.136 19 C -0.093 4.093 20 C -0.144 4.144 21 C -0.022 4.022 22 N -0.148 5.148 23 H 0.286 0.714 24 C 0.060 3.940 25 C -0.351 4.351 26 C 0.269 3.731 27 O -0.429 6.429 28 C -0.105 4.105 29 C -0.075 4.075 30 H 0.157 0.843 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.140 0.860 35 H 0.112 0.888 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.170 0.830 39 H 0.176 0.824 40 H 0.274 0.726 41 H 0.170 0.830 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.626 -6.720 0.443 17.015 hybrid contribution -0.832 0.614 0.806 1.311 sum 14.794 -6.107 1.250 16.053 Atomic orbital electron populations 1.23603 0.74619 1.05950 1.02522 1.86508 1.25299 1.32236 1.83819 1.23707 0.91884 0.81357 0.71083 1.90638 1.67755 1.37414 1.46692 1.21692 0.87256 1.00747 1.05964 1.20844 0.82288 0.92721 1.02346 1.43398 1.04445 1.61603 1.05823 1.19740 1.11673 1.22935 0.93496 0.87690 1.26338 0.96616 0.92859 1.03939 1.70038 1.30476 1.15879 1.36374 0.85174 0.79745 0.78034 0.76727 1.17133 1.21355 1.19202 1.19017 0.88530 0.79950 0.83412 1.90590 1.71422 1.57821 1.32789 1.19713 0.92251 1.02602 0.99029 1.21579 0.94072 0.97089 0.96534 1.20063 0.92598 1.01868 0.99860 1.18396 0.84691 1.00910 0.98204 1.41461 1.05077 1.40598 1.27639 0.71356 1.23460 0.99961 0.86184 0.84368 1.20810 0.92645 1.14513 1.07159 1.22617 0.92594 0.76446 0.81469 1.90583 1.31143 1.55541 1.65624 1.19154 0.92080 1.01040 0.98191 1.20470 0.93249 0.97442 0.96387 0.84309 0.91855 0.92221 0.88583 0.86022 0.88769 0.95110 0.91658 0.83023 0.82413 0.72603 0.82955 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.56 113.37 1.20 1.84 16 2 O -0.36 -12.22 10.57 -51.35 -0.54 -12.76 16 3 C 0.48 19.56 7.96 71.24 0.57 20.13 16 4 O -0.54 -24.98 15.73 21.97 0.35 -24.64 16 5 C -0.12 -5.13 6.08 29.85 0.18 -4.95 16 6 C 0.14 7.45 4.14 86.38 0.36 7.81 16 7 N -0.44 -23.15 2.50 -639.13 -1.60 -24.75 16 8 C -0.35 -17.31 6.04 84.09 0.51 -16.80 16 9 H 0.11 4.89 6.36 -2.91 -0.02 4.87 16 10 C 0.01 0.31 4.90 84.95 0.42 0.73 16 11 N -0.89 -47.64 11.57 21.68 0.25 -47.38 16 12 Si 0.98 37.16 29.58 68.60 2.03 39.19 16 13 H -0.25 -8.48 7.11 99.48 0.71 -7.77 16 14 H -0.29 -11.10 7.11 99.48 0.71 -10.39 16 15 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 16 C 0.50 27.54 7.34 86.70 0.64 28.17 16 17 O -0.64 -39.08 16.43 -4.09 -0.07 -39.14 16 18 C -0.13 -6.30 5.52 -20.08 -0.11 -6.41 16 19 C -0.07 -2.96 7.70 22.29 0.17 -2.79 16 20 C -0.12 -3.70 10.00 22.11 0.22 -3.48 16 21 C 0.08 2.23 7.24 39.07 0.28 2.52 16 22 N -0.55 -7.08 5.92 -186.35 -1.10 -8.18 16 23 H 0.44 1.71 8.96 -92.71 -0.83 0.88 16 24 C 0.20 2.00 11.82 84.15 0.99 2.99 16 25 C -0.34 -8.18 6.13 -20.02 -0.12 -8.30 16 26 C 0.40 9.66 11.44 68.69 0.79 10.45 16 27 O -0.55 -20.95 16.81 -3.39 -0.06 -21.00 16 28 C -0.10 -3.51 6.23 -20.08 -0.13 -3.63 16 29 C -0.06 -2.50 9.35 22.69 0.21 -2.29 16 30 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.06 1.54 8.13 -2.38 -0.02 1.52 16 32 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 33 H 0.10 4.26 8.14 -2.39 -0.02 4.24 16 34 H 0.12 4.81 8.14 -2.39 -0.02 4.79 16 35 H 0.09 5.21 5.75 -2.38 -0.01 5.20 16 36 H 0.03 1.78 7.55 -2.39 -0.02 1.76 16 37 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 38 H 0.15 6.66 5.38 -2.91 -0.02 6.65 16 39 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.26 -1.19 8.06 -2.91 -0.02 -1.22 16 41 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.10 4.93 7.28 -2.91 -0.02 4.90 16 Total: -1.00 -90.49 367.34 5.69 -84.79 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.26 Total: 27.89 kcal Atomic # 6 Polarization: 19.81 SS G_CDS: 6.17 Total: 25.98 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -2.45 Total: -80.31 kcal Atomic # 8 Polarization: -97.22 SS G_CDS: -0.32 Total: -97.54 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Total: -90.49 5.69 -84.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587592910.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.744 kcal (2) G-P(sol) polarization free energy of solvation -90.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds