Wall clock time and date at job start Wed Apr 1 2020 02:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 O 1.45194 * 109.47339 * 239.99705 * 2 1 3 5 5 C 1.34809 * 117.00090 * 90.00098 * 4 2 1 6 6 O 1.21565 * 119.99614 * 0.02562 * 5 4 2 7 7 C 1.47010 * 120.00251 * 180.02562 * 5 4 2 8 8 C 1.41147 * 126.49424 * 359.68448 * 7 5 4 9 9 N 1.30438 * 108.29379 * 179.87725 * 8 7 5 10 10 N 1.39903 * 109.24159 * 0.39030 * 9 8 7 11 11 C 1.46500 * 125.79741 * 179.77289 * 10 9 8 12 12 C 1.50706 * 109.47050 * 269.97482 * 11 10 9 13 13 H 1.07994 * 119.99796 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99930 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00034 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99690 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47125 * 90.00209 * 16 14 12 18 18 H 1.48503 * 109.46914 * 209.99773 * 16 14 12 19 19 H 1.48496 * 109.47324 * 329.99975 * 16 14 12 20 20 C 1.35140 * 108.40840 * 359.74904 * 10 9 8 21 21 C 1.47728 * 126.48214 * 179.97438 * 20 10 9 22 22 C 1.39622 * 120.14747 * 314.72599 * 21 20 10 23 23 C 1.37945 * 119.84925 * 179.78765 * 22 21 20 24 24 C 1.38367 * 120.14892 * 0.46309 * 23 22 21 25 25 C 1.38369 * 120.30018 * 359.79081 * 24 23 22 26 26 C 1.37949 * 120.14892 * 359.97438 * 25 24 23 27 27 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 28 28 O 1.20829 * 120.00015 * 115.00122 * 27 2 1 29 29 O 1.34229 * 120.00032 * 294.99778 * 27 2 1 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 1.07999 * 125.85008 * 0.04120 * 8 7 5 34 34 H 1.09002 * 109.47231 * 29.97794 * 11 10 9 35 35 H 1.08999 * 109.47339 * 149.97800 * 11 10 9 36 36 H 0.97003 * 119.99963 * 180.02562 * 15 14 12 37 37 H 1.08005 * 120.07664 * 0.02562 * 22 21 20 38 38 H 1.07996 * 119.92671 * 180.23446 * 23 22 21 39 39 H 1.07999 * 119.85321 * 179.76420 * 24 23 22 40 40 H 1.07999 * 119.92120 * 179.97438 * 25 24 23 41 41 H 1.08005 * 120.07090 * 180.02562 * 26 25 24 42 42 H 0.96702 * 117.00010 * 179.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2181 0.0672 -2.2858 6 8 1.9978 1.2623 -2.2548 7 6 2.7069 -0.5584 -3.5231 8 6 3.0115 -1.9239 -3.7098 9 7 3.4120 -2.0896 -4.9401 10 7 3.3958 -0.8562 -5.6002 11 6 3.7815 -0.6255 -6.9946 12 6 5.2534 -0.3089 -7.0628 13 1 5.8424 -0.2818 -6.1581 14 6 5.8479 -0.0538 -8.2804 15 7 5.1307 -0.0873 -9.3823 16 14 7.6721 0.3393 -8.3649 17 1 8.4424 -0.9192 -8.5327 18 1 7.9322 1.2364 -9.5194 19 1 8.0919 1.0130 -7.1099 20 6 2.9635 0.0862 -4.7334 21 6 2.7951 1.5267 -5.0142 22 6 3.7901 2.2292 -5.6967 23 6 3.6245 3.5732 -5.9594 24 6 2.4797 4.2274 -5.5399 25 6 1.4920 3.5385 -4.8584 26 6 1.6427 2.1931 -4.5933 27 6 2.0323 -0.7104 1.2305 28 8 2.6506 -1.7428 1.1220 29 8 1.7929 -0.1962 2.4470 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 2.9251 -2.6991 -2.9628 34 1 3.5747 -1.5203 -7.5816 35 1 3.2108 0.2121 -7.3956 36 1 5.5491 0.0918 -10.2389 37 1 4.6858 1.7206 -6.0215 38 1 4.3917 4.1169 -6.4905 39 1 2.3567 5.2806 -5.7448 40 1 0.6011 4.0553 -4.5334 41 1 0.8707 1.6565 -4.0616 42 1 2.1346 -0.6877 3.2065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594244435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:40 Heat of formation + Delta-G solvation = -93.537416 kcal Electronic energy + Delta-G solvation = -29840.340169 eV Core-core repulsion = 25558.508503 eV Total energy + Delta-G solvation = -4281.831666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.54950 -41.70743 -40.68544 -39.66875 -37.63771 -37.06815 -35.88927 -33.93670 -33.31343 -32.86252 -31.71072 -30.05143 -29.35678 -26.53866 -25.71592 -24.51542 -23.64382 -23.47882 -22.36264 -21.42726 -20.69154 -19.42701 -18.90219 -18.77424 -18.37112 -17.91607 -17.35704 -16.91400 -16.72239 -16.60806 -16.42572 -15.99531 -15.66858 -15.25135 -15.06177 -14.80011 -14.48437 -14.35102 -14.28184 -14.07202 -13.84643 -13.64748 -13.53101 -13.28266 -13.06385 -12.77466 -12.71332 -12.65565 -12.42488 -12.30260 -12.04417 -11.93161 -11.87030 -11.85869 -11.48313 -11.33769 -10.78061 -10.73746 -9.93677 -9.73314 -9.34780 -8.39146 -6.54584 -0.18968 0.59527 0.71565 0.98015 1.02738 1.16357 1.35901 1.37687 1.46861 1.59911 2.14329 2.29208 2.31451 2.92201 2.95617 3.40737 3.59776 3.73806 3.77403 3.92430 4.04564 4.12022 4.18967 4.26733 4.37109 4.43007 4.61524 4.67729 4.72408 4.78303 4.80412 4.88784 5.04609 5.11571 5.20568 5.24169 5.44798 5.48572 5.49628 5.57334 5.64715 5.65946 5.70915 5.88556 6.12196 6.50846 6.62413 6.76374 6.88715 7.14938 8.69093 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012745 B = 0.003383 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.477866 B = 8275.629826 C = 9483.532968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.089 3.911 3 H 0.129 0.871 4 O -0.338 6.338 5 C 0.560 3.440 6 O -0.517 6.517 7 C -0.310 4.310 8 C 0.098 3.902 9 N -0.326 5.326 10 N -0.326 5.326 11 C 0.270 3.730 12 C -0.549 4.549 13 H 0.053 0.947 14 C 0.032 3.968 15 N -0.911 5.911 16 Si 0.964 3.036 17 H -0.275 1.275 18 H -0.270 1.270 19 H -0.268 1.268 20 C 0.203 3.797 21 C -0.078 4.078 22 C -0.103 4.103 23 C -0.139 4.139 24 C -0.094 4.094 25 C -0.131 4.131 26 C -0.052 4.052 27 C 0.494 3.506 28 O -0.532 6.532 29 O -0.495 6.495 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.222 0.778 34 H 0.034 0.966 35 H 0.048 0.952 36 H 0.275 0.725 37 H 0.119 0.881 38 H 0.136 0.864 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.126 0.874 42 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.428 7.224 18.003 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 H 0.146 0.854 4 O -0.255 6.255 5 C 0.407 3.593 6 O -0.407 6.407 7 C -0.324 4.324 8 C -0.088 4.088 9 N -0.146 5.146 10 N -0.101 5.101 11 C 0.152 3.848 12 C -0.587 4.587 13 H 0.071 0.929 14 C -0.171 4.171 15 N -0.549 5.549 16 Si 0.788 3.212 17 H -0.200 1.200 18 H -0.194 1.194 19 H -0.192 1.192 20 C 0.067 3.933 21 C -0.080 4.080 22 C -0.122 4.122 23 C -0.157 4.157 24 C -0.112 4.112 25 C -0.149 4.149 26 C -0.072 4.072 27 C 0.336 3.664 28 O -0.421 6.421 29 O -0.310 6.310 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.132 0.868 33 H 0.238 0.762 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.137 0.863 38 H 0.154 0.846 39 H 0.176 0.824 40 H 0.175 0.825 41 H 0.144 0.856 42 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -10.013 6.619 16.439 20.354 hybrid contribution 1.226 -0.216 0.596 1.380 sum -8.786 6.403 17.034 20.208 Atomic orbital electron populations 1.22164 0.88581 1.04656 1.05903 1.22091 0.98020 0.97198 0.79352 0.85368 1.86625 1.78023 1.41349 1.19478 1.19594 0.73366 0.84220 0.82126 1.90823 1.50387 1.15414 1.84075 1.19091 1.25810 0.94706 0.92763 1.24466 0.94492 0.95890 0.93984 1.77154 1.25046 1.03967 1.08406 1.49471 1.44623 1.03932 1.12081 1.19459 0.96460 0.97504 0.71364 1.21230 0.93049 1.50642 0.93781 0.92923 1.25629 1.02951 0.94005 0.94466 1.69991 1.38150 1.47788 0.98921 0.85453 0.78850 0.78536 0.78350 1.20025 1.19446 1.19242 1.20210 0.93154 0.90741 0.89191 1.18105 0.97745 0.88131 1.04054 1.21785 0.98899 0.95844 0.95669 1.21280 0.99630 0.93546 1.01268 1.21656 0.92502 1.01250 0.95780 1.21354 1.00654 0.93227 0.99633 1.21200 0.95158 0.95435 0.95366 1.22772 0.75708 0.82545 0.85425 1.90777 1.38680 1.25058 1.87587 1.84410 1.74405 1.56058 1.16078 0.90694 0.90274 0.86819 0.76178 0.94830 0.93464 0.91581 0.86263 0.84570 0.82406 0.82512 0.85583 0.69946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.53 71.98 0.69 -1.60 16 2 C 0.09 1.86 3.09 29.85 0.09 1.95 16 3 H 0.13 2.56 7.16 -2.39 -0.02 2.54 16 4 O -0.34 -9.62 9.27 -50.82 -0.47 -10.10 16 5 C 0.56 18.39 7.81 70.12 0.55 18.94 16 6 O -0.52 -17.08 12.22 19.62 0.24 -16.84 16 7 C -0.31 -11.82 6.12 -19.96 -0.12 -11.94 16 8 C 0.10 3.65 11.84 85.61 1.01 4.66 16 9 N -0.33 -14.64 12.48 -56.38 -0.70 -15.34 16 10 N -0.33 -15.41 3.59 -337.98 -1.21 -16.62 16 11 C 0.27 14.01 5.42 85.63 0.46 14.48 16 12 C -0.55 -29.63 7.23 25.60 0.19 -29.44 16 13 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 14 C 0.03 1.68 5.46 84.66 0.46 2.14 16 15 N -0.91 -50.09 13.29 21.45 0.28 -49.81 16 16 Si 0.96 41.92 29.54 68.60 2.03 43.95 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 20 C 0.20 8.67 6.50 41.45 0.27 8.94 16 21 C -0.08 -3.09 5.07 -20.10 -0.10 -3.19 16 22 C -0.10 -4.11 8.64 22.53 0.19 -3.92 16 23 C -0.14 -4.45 10.03 22.23 0.22 -4.23 16 24 C -0.09 -2.40 10.04 22.33 0.22 -2.17 16 25 C -0.13 -3.41 10.03 22.23 0.22 -3.19 16 26 C -0.05 -1.71 7.54 22.53 0.17 -1.54 16 27 C 0.49 9.91 7.66 71.24 0.55 10.45 16 28 O -0.53 -14.99 17.27 28.31 0.49 -14.50 16 29 O -0.49 -5.67 13.42 -51.41 -0.69 -6.35 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.22 6.44 8.06 -2.91 -0.02 6.41 16 34 H 0.03 1.87 8.14 -2.39 -0.02 1.86 16 35 H 0.05 2.52 7.32 -2.39 -0.02 2.50 16 36 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 37 H 0.12 5.49 5.55 -2.91 -0.02 5.47 16 38 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 39 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 40 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 41 H 0.13 3.94 6.78 -2.91 -0.02 3.92 16 42 H 0.44 1.18 9.10 -74.06 -0.67 0.51 16 Total: -1.00 -70.84 371.24 5.45 -65.39 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.41 Total: 19.89 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 5.08 Total: 0.34 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -1.63 Total: -81.78 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: -0.43 Total: -47.79 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -70.84 5.45 -65.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594244435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.146 kcal (2) G-P(sol) polarization free energy of solvation -70.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds