Wall clock time and date at job start Wed Apr 1 2020 02:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46991 * 2 1 4 4 C 1.46504 * 120.00208 * 90.00195 * 3 2 1 5 5 C 1.53002 * 109.47370 * 89.99438 * 4 3 2 6 6 N 1.46500 * 109.47121 * 180.02562 * 5 4 3 7 7 C 1.34771 * 119.99710 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00337 * 0.02562 * 7 6 5 9 9 C 1.50708 * 119.99672 * 180.27563 * 7 6 5 10 10 H 1.09007 * 115.54637 * 298.32036 * 9 7 6 11 11 C 1.53004 * 117.49636 * 152.61713 * 9 7 6 12 12 C 1.52997 * 117.50161 * 83.99471 * 9 7 6 13 13 H 1.08999 * 117.50071 * 214.98038 * 12 9 7 14 14 C 1.50699 * 117.49621 * 359.97438 * 12 9 7 15 15 O 1.20830 * 120.00218 * 96.15072 * 14 12 9 16 16 O 1.34228 * 120.00085 * 276.15571 * 14 12 9 17 17 C 1.34781 * 120.00205 * 269.99470 * 3 2 1 18 18 O 1.21277 * 119.99922 * 180.02562 * 17 3 2 19 19 C 1.50698 * 119.99692 * 0.02562 * 17 3 2 20 20 S 1.80997 * 109.47131 * 179.97438 * 19 17 3 21 21 C 1.76193 * 100.00141 * 180.02562 * 20 19 17 22 22 H 1.08008 * 120.00048 * 359.97438 * 21 20 19 23 23 C 1.38799 * 120.00489 * 179.97438 * 21 20 19 24 24 N 1.31638 * 119.99576 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00543 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46982 * 0.02562 * 25 23 21 27 27 H 1.48510 * 109.47010 * 119.99939 * 25 23 21 28 28 H 1.48495 * 109.47371 * 239.99880 * 25 23 21 29 29 H 1.09005 * 109.47183 * 300.00342 * 1 2 3 30 30 H 1.09004 * 109.46876 * 59.99851 * 1 2 3 31 31 H 1.08991 * 109.47171 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47093 * 239.99883 * 2 1 3 33 33 H 1.09003 * 109.46640 * 119.99655 * 2 1 3 34 34 H 1.09001 * 109.46859 * 329.99576 * 4 3 2 35 35 H 1.09000 * 109.47407 * 209.99718 * 4 3 2 36 36 H 1.09001 * 109.47017 * 60.00234 * 5 4 3 37 37 H 1.09000 * 109.47085 * 300.00478 * 5 4 3 38 38 H 0.96996 * 119.99643 * 359.97438 * 6 5 4 39 39 H 1.08993 * 117.49782 * 0.02562 * 11 9 7 40 40 H 1.09001 * 117.49689 * 145.02060 * 11 9 7 41 41 H 0.96707 * 117.00058 * 179.97438 * 16 14 12 42 42 H 1.08999 * 109.47140 * 299.99973 * 19 17 3 43 43 H 1.09006 * 109.47184 * 59.99459 * 19 17 3 44 44 H 0.97000 * 119.99888 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.7075 1.8314 1.7105 6 7 3.9515 2.5216 2.9795 7 6 5.1643 2.4505 3.5629 8 8 6.0539 1.8155 3.0371 9 6 5.4135 3.1553 4.8714 10 1 5.2991 4.2392 4.8508 11 6 6.4886 2.5753 5.7927 12 6 5.0094 2.4265 6.1546 13 1 4.6295 3.0309 6.9783 14 6 4.3922 1.0590 6.0131 15 8 5.0803 0.0716 6.1202 16 8 3.0780 0.9379 5.7682 17 6 2.2431 2.0166 -1.1672 18 8 2.6477 3.1598 -1.1672 19 6 1.9915 1.3063 -2.4723 20 16 2.3830 2.4154 -3.8480 21 6 2.0085 1.3598 -5.2081 22 1 1.6536 0.3553 -5.0304 23 6 2.1696 1.8190 -6.5080 24 7 2.6017 3.0434 -6.7247 25 14 1.7732 0.6997 -7.9500 26 1 1.3085 -0.6160 -7.4421 27 1 0.7044 1.3165 -8.7762 28 1 2.9910 0.5091 -8.7781 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.5817 1.6878 2.0284 35 1 2.0956 3.1411 1.1384 36 1 4.3884 2.2155 0.9508 37 1 3.8745 0.7622 1.8408 38 1 3.2403 3.0303 3.3994 39 1 7.0159 1.6842 5.4522 40 1 7.0818 3.2775 6.3784 41 1 2.7278 0.0403 5.6851 42 1 2.6213 0.4186 -2.5301 43 1 0.9434 1.0124 -2.5299 44 1 2.7146 3.3643 -7.6331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596333141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:38 Heat of formation + Delta-G solvation = -135.740372 kcal Electronic energy + Delta-G solvation = -27359.489411 eV Core-core repulsion = 23211.271638 eV Total energy + Delta-G solvation = -4148.217772 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.18768 -39.97374 -39.51307 -37.10701 -36.35959 -36.08685 -34.98245 -32.43797 -31.48152 -29.84886 -28.17689 -26.27946 -25.51863 -24.77094 -23.45465 -22.62804 -21.37139 -20.58470 -19.17589 -18.63630 -17.94535 -17.69651 -16.94072 -16.83318 -16.58473 -16.12965 -15.69743 -15.35013 -15.04984 -14.86748 -14.81337 -14.28105 -13.96345 -13.85032 -13.65548 -13.45092 -13.33201 -12.98693 -12.58694 -12.49408 -12.28915 -12.06366 -12.01074 -11.87982 -11.53415 -11.43010 -11.30776 -11.19729 -11.07034 -11.02508 -10.95004 -10.76255 -10.25970 -9.81205 -9.45273 -9.34658 -9.08292 -8.71601 -8.23961 -6.51541 -6.22794 -3.93456 1.60347 2.14908 2.32477 2.54595 2.94832 3.00321 3.16162 3.20936 3.27313 3.31217 3.58508 3.97248 4.08463 4.18989 4.29436 4.61761 4.62035 4.71857 4.76467 4.83234 5.02569 5.09541 5.11787 5.13774 5.18545 5.24197 5.30103 5.50132 5.54027 5.61142 5.70557 5.75478 5.80269 5.90509 5.99941 6.01542 6.07146 6.18293 6.56324 7.14214 7.39342 7.42586 7.58950 7.88389 8.34345 8.47369 9.22719 10.84699 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.002060 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.091780 B =13587.344064 C =14251.855373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 N -0.618 5.618 4 C 0.110 3.890 5 C 0.103 3.897 6 N -0.716 5.716 7 C 0.532 3.468 8 O -0.524 6.524 9 C -0.162 4.162 10 H 0.147 0.853 11 C -0.112 4.112 12 C -0.148 4.148 13 H 0.152 0.848 14 C 0.503 3.497 15 O -0.501 6.501 16 O -0.509 6.509 17 C 0.535 3.465 18 O -0.512 6.512 19 C -0.150 4.150 20 S -0.062 6.062 21 C -0.534 4.534 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.404 0.596 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.413 0.587 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.942 -2.961 28.700 28.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.354 5.354 4 C -0.014 4.014 5 C -0.022 4.022 6 N -0.368 5.368 7 C 0.317 3.683 8 O -0.400 6.400 9 C -0.183 4.183 10 H 0.165 0.835 11 C -0.149 4.149 12 C -0.167 4.167 13 H 0.169 0.831 14 C 0.344 3.656 15 O -0.387 6.387 16 O -0.321 6.321 17 C 0.323 3.677 18 O -0.385 6.385 19 C -0.301 4.301 20 S 0.164 5.836 21 C -0.682 4.682 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.205 1.205 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.238 0.762 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.272 0.728 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.308 -1.485 28.205 28.246 hybrid contribution -1.446 -2.378 -0.746 2.881 sum -1.754 -3.863 27.459 27.785 Atomic orbital electron populations 1.22220 0.95773 1.02287 1.02767 1.21580 0.94569 0.82197 1.03416 1.47893 1.67834 1.14627 1.05061 1.21404 0.94267 0.99759 0.85977 1.21807 0.97945 0.97353 0.85085 1.45738 1.13184 1.53672 1.24231 1.19570 0.82481 0.80832 0.85452 1.90778 1.43530 1.41206 1.64438 1.22437 1.06222 1.01124 0.88515 0.83517 1.23167 0.89168 1.03956 0.98654 1.21816 1.00648 0.93301 1.00918 0.83074 1.22274 0.80123 0.90908 0.72254 1.90770 1.62695 1.39813 1.45462 1.84485 1.25430 1.39022 1.83176 1.20412 0.76217 0.86487 0.84613 1.90704 1.43573 1.17500 1.86737 1.23579 1.04846 1.04558 0.97081 1.85407 1.86894 1.17865 0.93397 1.22886 1.51665 1.01490 0.92149 0.90881 1.25000 0.94674 0.95553 0.98405 1.70031 1.43026 1.15624 1.21573 0.86115 0.78183 0.80064 0.81121 1.19613 1.20573 1.20550 0.92512 0.91795 0.91505 0.89707 0.90629 0.90207 0.89115 0.90424 0.91471 0.76177 0.86350 0.85881 0.72767 0.89199 0.89122 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.24 37.16 0.38 -1.16 16 2 C 0.11 1.05 5.93 -4.04 -0.02 1.02 16 3 N -0.62 -8.03 2.47 -173.68 -0.43 -8.46 16 4 C 0.11 1.14 5.52 -4.04 -0.02 1.12 16 5 C 0.10 1.17 6.00 -4.04 -0.02 1.15 16 6 N -0.72 -6.52 5.56 -60.29 -0.33 -6.85 16 7 C 0.53 5.85 6.52 -10.98 -0.07 5.77 16 8 O -0.52 -8.33 16.60 5.55 0.09 -8.24 16 9 C -0.16 -1.07 6.18 -91.77 -0.57 -1.64 16 10 H 0.15 0.54 8.14 -51.92 -0.42 0.12 16 11 C -0.11 -0.73 9.56 -26.73 -0.26 -0.99 16 12 C -0.15 -0.83 6.29 -91.77 -0.58 -1.41 16 13 H 0.15 0.36 8.14 -51.93 -0.42 -0.06 16 14 C 0.50 4.16 7.02 36.01 0.25 4.41 16 15 O -0.50 -6.08 17.37 -18.75 -0.33 -6.40 16 16 O -0.51 -2.82 13.42 -39.25 -0.53 -3.35 16 17 C 0.53 9.78 7.69 -10.98 -0.08 9.69 16 18 O -0.51 -11.28 15.44 5.56 0.09 -11.20 16 19 C -0.15 -2.99 4.71 36.00 0.17 -2.82 16 20 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 21 C -0.53 -15.11 9.50 30.94 0.29 -14.81 16 22 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 23 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 24 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 25 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.70 7.22 -51.93 -0.37 0.33 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.90 6.44 -51.93 -0.33 0.56 16 33 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 34 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 35 H 0.09 1.06 7.42 -51.93 -0.39 0.67 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.40 2.43 8.47 -40.82 -0.35 2.09 16 39 H 0.12 1.12 7.72 -51.93 -0.40 0.72 16 40 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.41 0.94 9.10 45.56 0.41 1.36 16 42 H 0.09 1.68 7.40 -51.92 -0.38 1.29 16 43 H 0.09 1.67 7.19 -51.91 -0.37 1.29 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 396.39 15.07 5.97 5.97 Total: -1.00 -40.15 396.39 -8.12 -48.27 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.53 Total: 0.87 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -0.63 Total: 2.32 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: -0.03 Total: -40.70 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.67 Total: -29.18 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -40.15 -8.12 -48.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596333141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.472 kcal (2) G-P(sol) polarization free energy of solvation -40.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds