Wall clock time and date at job start Wed Apr 1 2020 02:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46991 * 2 1 4 4 C 1.46504 * 120.00208 * 90.00195 * 3 2 1 5 5 C 1.53002 * 109.47370 * 89.99438 * 4 3 2 6 6 N 1.46500 * 109.47121 * 180.02562 * 5 4 3 7 7 C 1.34771 * 119.99710 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00337 * 0.02562 * 7 6 5 9 9 C 1.50708 * 119.99672 * 180.27563 * 7 6 5 10 10 H 1.09007 * 115.54637 * 298.32036 * 9 7 6 11 11 C 1.53004 * 117.49636 * 152.61713 * 9 7 6 12 12 C 1.52997 * 117.50161 * 83.99471 * 9 7 6 13 13 H 1.08999 * 117.50071 * 214.98038 * 12 9 7 14 14 C 1.50699 * 117.49621 * 359.97438 * 12 9 7 15 15 O 1.20830 * 120.00218 * 96.15072 * 14 12 9 16 16 O 1.34228 * 120.00085 * 276.15571 * 14 12 9 17 17 C 1.34781 * 120.00205 * 269.99470 * 3 2 1 18 18 O 1.21277 * 119.99922 * 180.02562 * 17 3 2 19 19 C 1.50698 * 119.99692 * 0.02562 * 17 3 2 20 20 S 1.80997 * 109.47131 * 179.97438 * 19 17 3 21 21 C 1.76193 * 100.00141 * 180.02562 * 20 19 17 22 22 H 1.08008 * 120.00048 * 359.97438 * 21 20 19 23 23 C 1.38799 * 120.00489 * 179.97438 * 21 20 19 24 24 N 1.31638 * 119.99576 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00543 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46982 * 0.02562 * 25 23 21 27 27 H 1.48510 * 109.47010 * 119.99939 * 25 23 21 28 28 H 1.48495 * 109.47371 * 239.99880 * 25 23 21 29 29 H 1.09005 * 109.47183 * 300.00342 * 1 2 3 30 30 H 1.09004 * 109.46876 * 59.99851 * 1 2 3 31 31 H 1.08991 * 109.47171 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47093 * 239.99883 * 2 1 3 33 33 H 1.09003 * 109.46640 * 119.99655 * 2 1 3 34 34 H 1.09001 * 109.46859 * 329.99576 * 4 3 2 35 35 H 1.09000 * 109.47407 * 209.99718 * 4 3 2 36 36 H 1.09001 * 109.47017 * 60.00234 * 5 4 3 37 37 H 1.09000 * 109.47085 * 300.00478 * 5 4 3 38 38 H 0.96996 * 119.99643 * 359.97438 * 6 5 4 39 39 H 1.08993 * 117.49782 * 0.02562 * 11 9 7 40 40 H 1.09001 * 117.49689 * 145.02060 * 11 9 7 41 41 H 0.96707 * 117.00058 * 179.97438 * 16 14 12 42 42 H 1.08999 * 109.47140 * 299.99973 * 19 17 3 43 43 H 1.09006 * 109.47184 * 59.99459 * 19 17 3 44 44 H 0.97000 * 119.99888 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.7075 1.8314 1.7105 6 7 3.9515 2.5216 2.9795 7 6 5.1643 2.4505 3.5629 8 8 6.0539 1.8155 3.0371 9 6 5.4135 3.1553 4.8714 10 1 5.2991 4.2392 4.8508 11 6 6.4886 2.5753 5.7927 12 6 5.0094 2.4265 6.1546 13 1 4.6295 3.0309 6.9783 14 6 4.3922 1.0590 6.0131 15 8 5.0803 0.0716 6.1202 16 8 3.0780 0.9379 5.7682 17 6 2.2431 2.0166 -1.1672 18 8 2.6477 3.1598 -1.1672 19 6 1.9915 1.3063 -2.4723 20 16 2.3830 2.4154 -3.8480 21 6 2.0085 1.3598 -5.2081 22 1 1.6536 0.3553 -5.0304 23 6 2.1696 1.8190 -6.5080 24 7 2.6017 3.0434 -6.7247 25 14 1.7732 0.6997 -7.9500 26 1 1.3085 -0.6160 -7.4421 27 1 0.7044 1.3165 -8.7762 28 1 2.9910 0.5091 -8.7781 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.5817 1.6878 2.0284 35 1 2.0956 3.1411 1.1384 36 1 4.3884 2.2155 0.9508 37 1 3.8745 0.7622 1.8408 38 1 3.2403 3.0303 3.3994 39 1 7.0159 1.6842 5.4522 40 1 7.0818 3.2775 6.3784 41 1 2.7278 0.0403 5.6851 42 1 2.6213 0.4186 -2.5301 43 1 0.9434 1.0124 -2.5299 44 1 2.7146 3.3643 -7.6331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596333141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:37 Heat of formation + Delta-G solvation = -167.104991 kcal Electronic energy + Delta-G solvation = -27360.849482 eV Core-core repulsion = 23211.271638 eV Total energy + Delta-G solvation = -4149.577844 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.85224 -41.08420 -40.50284 -37.74229 -37.31065 -36.90976 -35.97302 -34.59787 -32.43817 -31.15166 -29.33282 -27.68641 -26.85339 -25.54489 -24.34697 -23.57641 -21.92159 -21.36980 -20.45212 -19.55108 -19.26770 -18.59839 -18.17654 -17.72775 -17.45922 -16.91287 -16.89585 -16.84560 -16.32858 -16.11248 -15.77226 -15.57651 -15.06202 -14.86398 -14.70427 -14.53849 -14.41654 -14.12765 -14.00312 -13.44901 -13.18895 -13.10791 -13.04576 -12.92890 -12.78124 -12.63534 -12.63032 -12.36442 -12.07838 -12.00920 -11.75137 -11.71032 -11.56499 -11.18452 -11.16889 -10.91891 -10.28338 -10.27460 -9.85082 -8.68825 -8.36164 -6.14390 0.99613 1.22077 1.35126 1.40304 1.41854 1.50233 1.55331 1.76343 1.96594 2.25174 2.31393 2.59930 2.98099 3.23345 3.44644 3.57459 3.63821 3.71635 3.82198 3.98538 4.03909 4.18820 4.19457 4.31698 4.36233 4.40411 4.46490 4.57869 4.69411 4.72634 4.81744 4.83238 4.90306 5.00418 5.02012 5.22776 5.37908 5.40687 5.52985 5.55921 6.18193 6.20688 6.39332 6.89629 7.05214 7.07945 7.11326 8.73374 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.002060 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.091780 B =13587.344064 C =14251.855373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.096 3.904 3 N -0.603 5.603 4 C 0.115 3.885 5 C 0.113 3.887 6 N -0.700 5.700 7 C 0.522 3.478 8 O -0.584 6.584 9 C -0.159 4.159 10 H 0.186 0.814 11 C -0.124 4.124 12 C -0.131 4.131 13 H 0.197 0.803 14 C 0.499 3.501 15 O -0.550 6.550 16 O -0.498 6.498 17 C 0.533 3.467 18 O -0.560 6.560 19 C -0.124 4.124 20 S -0.154 6.154 21 C -0.543 4.543 22 H 0.082 0.918 23 C 0.012 3.988 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.256 1.256 27 H -0.273 1.273 28 H -0.275 1.275 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.129 0.871 35 H 0.079 0.921 36 H 0.031 0.969 37 H 0.065 0.935 38 H 0.422 0.578 39 H 0.079 0.921 40 H 0.158 0.842 41 H 0.427 0.573 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.009 -3.996 30.985 31.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.025 4.025 3 N -0.337 5.337 4 C -0.008 4.008 5 C -0.013 4.013 6 N -0.353 5.353 7 C 0.309 3.691 8 O -0.464 6.464 9 C -0.180 4.180 10 H 0.203 0.797 11 C -0.161 4.161 12 C -0.150 4.150 13 H 0.214 0.786 14 C 0.342 3.658 15 O -0.441 6.441 16 O -0.311 6.311 17 C 0.320 3.680 18 O -0.437 6.437 19 C -0.275 4.275 20 S 0.073 5.927 21 C -0.691 4.691 22 H 0.100 0.900 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.180 1.180 27 H -0.198 1.198 28 H -0.200 1.200 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.127 0.873 34 H 0.147 0.853 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.084 0.916 38 H 0.260 0.740 39 H 0.098 0.902 40 H 0.176 0.824 41 H 0.288 0.712 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.456 -2.536 30.551 30.754 hybrid contribution -0.845 -2.130 -1.324 2.646 sum -3.301 -4.666 29.227 29.781 Atomic orbital electron populations 1.22177 0.94416 1.03584 1.02305 1.21918 0.95608 0.80179 1.04811 1.47867 1.65885 1.15687 1.04289 1.21582 0.94416 0.99317 0.85528 1.21528 0.97558 0.97136 0.85077 1.45602 1.13487 1.53089 1.23125 1.20446 0.81919 0.80061 0.86680 1.90754 1.45373 1.43900 1.66365 1.22500 1.06725 1.02516 0.86219 0.79685 1.23256 0.90066 1.03405 0.99386 1.22078 0.99629 0.92068 1.01187 0.78640 1.22879 0.80519 0.91433 0.70938 1.90762 1.63861 1.41623 1.47842 1.84459 1.24045 1.40311 1.82313 1.20153 0.76284 0.85930 0.85592 1.90686 1.46125 1.19468 1.87452 1.23397 1.06008 1.02974 0.95112 1.85570 1.87714 1.21997 0.97381 1.23205 1.51596 1.01716 0.92584 0.89954 1.26143 0.94196 0.97185 1.01721 1.70194 1.44311 1.17854 1.22423 0.84901 0.78092 0.78191 0.76743 1.17968 1.19795 1.20036 0.91007 0.94203 0.89347 0.90416 0.87295 0.85332 0.90218 0.95003 0.91621 0.73954 0.90231 0.82377 0.71154 0.87864 0.87317 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 10.24 71.98 0.74 -1.69 16 2 C 0.10 1.64 5.93 86.38 0.51 2.16 16 3 N -0.60 -14.84 2.47 -821.80 -2.03 -16.87 16 4 C 0.11 2.16 5.52 86.38 0.48 2.64 16 5 C 0.11 2.53 6.00 86.38 0.52 3.05 16 6 N -0.70 -11.85 5.56 -463.05 -2.57 -14.42 16 7 C 0.52 11.24 6.52 87.66 0.57 11.82 16 8 O -0.58 -19.49 16.60 -3.05 -0.05 -19.54 16 9 C -0.16 -1.74 6.18 -11.54 -0.07 -1.81 16 10 H 0.19 0.60 8.14 -2.38 -0.02 0.58 16 11 C -0.12 -1.44 9.56 30.60 0.29 -1.14 16 12 C -0.13 -1.09 6.29 -11.54 -0.07 -1.16 16 13 H 0.20 -0.10 8.14 -2.39 -0.02 -0.12 16 14 C 0.50 7.40 7.02 71.24 0.50 7.90 16 15 O -0.55 -13.39 17.37 21.95 0.38 -13.00 16 16 O -0.50 -4.12 13.42 -51.40 -0.69 -4.81 16 17 C 0.53 19.71 7.69 87.66 0.67 20.38 16 18 O -0.56 -25.70 15.44 -3.02 -0.05 -25.74 16 19 C -0.12 -4.98 4.71 71.24 0.34 -4.65 16 20 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 21 C -0.54 -31.20 9.50 67.95 0.65 -30.55 16 22 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 23 C 0.01 0.70 5.49 84.86 0.47 1.17 16 24 N -0.91 -56.37 13.22 21.65 0.29 -56.08 16 25 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 26 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 29 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.04 0.78 7.22 -2.38 -0.02 0.77 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.47 6.44 -2.39 -0.02 1.46 16 33 H 0.11 1.22 8.07 -2.39 -0.02 1.20 16 34 H 0.13 1.25 8.07 -2.39 -0.02 1.23 16 35 H 0.08 1.77 7.42 -2.39 -0.02 1.75 16 36 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.42 3.91 8.47 -92.71 -0.79 3.12 16 39 H 0.08 1.60 7.72 -2.39 -0.02 1.58 16 40 H 0.16 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.43 0.88 9.10 -74.05 -0.67 0.21 16 42 H 0.10 3.85 7.40 -2.40 -0.02 3.83 16 43 H 0.11 3.95 7.19 -2.39 -0.02 3.93 16 44 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -95.78 396.39 1.32 -94.47 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -0.41 Total: 11.83 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 5.59 Total: 8.10 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -4.32 Total: -87.37 kcal Atomic # 8 Polarization: -62.69 SS G_CDS: -0.41 Total: -63.10 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -95.78 1.32 -94.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596333141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.637 kcal (2) G-P(sol) polarization free energy of solvation -95.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds