Wall clock time and date at job start Wed Apr 1 2020 02:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35594 * 117.00058 * 2 1 4 4 C 1.39907 * 118.79755 * 180.02562 * 3 2 1 5 5 C 1.38912 * 119.42799 * 180.02562 * 4 3 2 6 6 C 1.47708 * 121.36322 * 179.97438 * 5 4 3 7 7 O 1.21606 * 120.00424 * 203.06019 * 6 5 4 8 8 N 1.34785 * 120.00371 * 23.05512 * 6 5 4 9 9 C 1.36662 * 120.00241 * 242.25955 * 8 6 5 10 10 H 1.08008 * 119.99654 * 203.20732 * 9 8 6 11 11 C 1.39187 * 120.00355 * 23.20033 * 9 8 6 12 12 N 1.31277 * 119.99699 * 11.32051 * 11 9 8 13 13 Si 1.86793 * 120.00019 * 191.31668 * 11 9 8 14 14 H 1.48497 * 109.47181 * 65.00631 * 13 11 9 15 15 H 1.48503 * 109.46997 * 185.00319 * 13 11 9 16 16 H 1.48499 * 109.47505 * 305.00439 * 13 11 9 17 17 C 1.46504 * 119.99560 * 62.25319 * 8 6 5 18 18 C 1.52999 * 109.46918 * 89.99943 * 17 8 6 19 19 C 1.50702 * 109.47200 * 179.97438 * 18 17 8 20 20 O 1.20823 * 119.99838 * 0.02562 * 19 18 17 21 21 O 1.34229 * 119.99998 * 180.02562 * 19 18 17 22 22 C 1.46378 * 117.26950 * 359.97438 * 5 4 3 23 23 C 1.39893 * 121.54485 * 180.02562 * 22 5 4 24 24 C 1.36357 * 119.59102 * 179.97438 * 23 22 5 25 25 C 1.39273 * 120.79317 * 0.02562 * 24 23 22 26 26 C 1.36142 * 121.07394 * 0.02562 * 25 24 23 27 27 C 1.40619 * 119.72739 * 0.02562 * 26 25 24 28 28 N 1.31267 * 118.80269 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47441 * 59.99848 * 1 2 3 30 30 H 1.09000 * 109.47559 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47039 * 300.00132 * 1 2 3 32 32 H 1.07999 * 120.28467 * 359.97064 * 4 3 2 33 33 H 0.96998 * 119.99636 * 184.87800 * 12 11 9 34 34 H 1.08998 * 109.47153 * 210.00391 * 17 8 6 35 35 H 1.08999 * 109.47233 * 330.00728 * 17 8 6 36 36 H 1.08998 * 109.47574 * 300.00190 * 18 17 8 37 37 H 1.09006 * 109.46811 * 60.00100 * 18 17 8 38 38 H 0.96696 * 116.99901 * 180.02562 * 21 19 18 39 39 H 1.08001 * 120.20189 * 0.02562 * 23 22 5 40 40 H 1.08001 * 119.60956 * 180.28288 * 24 23 22 41 41 H 1.07998 * 119.46335 * 180.02562 * 25 24 23 42 42 H 1.07996 * 120.13718 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0445 1.2081 0.0000 4 6 3.4429 1.2520 -0.0005 5 6 4.0872 2.4827 0.0000 6 6 5.5611 2.5789 0.0000 7 8 6.1049 3.5851 0.4129 8 7 6.3036 1.5512 -0.4576 9 6 7.1663 0.9044 0.3821 10 1 8.0084 0.3621 -0.0221 11 6 6.9598 0.9445 1.7580 12 7 5.8292 1.4069 2.2388 13 14 8.2914 0.3402 2.9202 14 1 9.4839 1.2176 2.8057 15 1 7.7836 0.3746 4.3153 16 1 8.6652 -1.0521 2.5637 17 6 6.1856 1.1276 -1.8551 18 6 7.1924 1.9009 -2.7090 19 6 7.0715 1.4647 -4.1465 20 8 6.2628 0.6222 -4.4562 21 8 7.8624 2.0122 -5.0827 22 6 3.2455 3.6803 0.0005 23 6 3.8001 4.9646 0.0006 24 6 2.9784 6.0528 0.0005 25 6 1.5940 5.9010 0.0010 26 6 1.0227 4.6652 0.0021 27 6 1.8384 3.5198 0.0032 28 7 1.3068 2.2939 -0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 4.0165 0.3369 -0.0005 33 1 5.7121 1.5011 3.1970 34 1 6.3905 0.0596 -1.9295 35 1 5.1757 1.3296 -2.2120 36 1 6.9875 2.9688 -2.6346 37 1 8.2024 1.6989 -2.3521 38 1 7.7479 1.7007 -5.9910 39 1 4.8724 5.0934 -0.0002 40 1 3.4063 7.0445 -0.0041 41 1 0.9635 6.7777 0.0006 42 1 -0.0526 4.5650 0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599350787.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:55 Heat of formation + Delta-G solvation = -104.649445 kcal Electronic energy + Delta-G solvation = -30498.087962 eV Core-core repulsion = 26215.774442 eV Total energy + Delta-G solvation = -4282.313520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.97036 -41.26800 -40.34925 -39.69513 -37.24533 -37.03430 -36.63104 -34.33450 -34.05269 -31.86521 -31.21974 -30.74440 -28.42093 -27.23316 -26.09141 -24.74942 -24.28237 -23.43443 -22.13099 -21.32790 -19.91913 -19.18626 -18.95923 -18.48023 -17.99570 -17.72795 -17.11551 -17.03501 -16.84666 -16.53672 -16.09889 -15.95464 -15.83767 -15.48557 -15.16425 -14.86918 -14.61068 -14.50531 -14.25069 -14.05091 -13.66599 -13.49272 -13.15139 -12.95048 -12.85869 -12.80185 -12.69182 -12.53536 -12.47738 -12.29737 -12.24191 -12.05430 -11.66119 -11.62810 -11.24073 -11.10964 -11.04966 -10.32274 -9.48575 -9.46563 -9.05096 -8.28271 -5.77925 -0.75380 -0.07494 0.77265 1.20184 1.43374 1.48010 1.54071 1.78268 1.99162 2.01576 2.23628 2.44281 2.93053 3.12654 3.21949 3.27431 3.74218 3.79831 3.87791 3.96634 4.03461 4.17699 4.30760 4.43243 4.45356 4.45938 4.47852 4.57659 4.61442 4.70295 4.74647 4.80603 4.84519 5.04980 5.07240 5.18677 5.41217 5.43706 5.50741 5.59133 5.60876 5.89283 6.00276 6.23250 6.78379 6.86531 7.01763 7.14781 7.43906 7.86978 8.82039 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.007294 B = 0.004964 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3838.040328 B = 5639.786294 C = 6652.657078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.319 6.319 3 C 0.341 3.659 4 C -0.128 4.128 5 C -0.024 4.024 6 C 0.619 3.381 7 O -0.545 6.545 8 N -0.543 5.543 9 C -0.301 4.301 10 H 0.101 0.899 11 C -0.023 4.023 12 N -0.907 5.907 13 Si 0.986 3.014 14 H -0.277 1.277 15 H -0.294 1.294 16 H -0.259 1.259 17 C 0.142 3.858 18 C -0.126 4.126 19 C 0.498 3.502 20 O -0.546 6.546 21 O -0.510 6.510 22 C -0.130 4.130 23 C -0.101 4.101 24 C -0.128 4.128 25 C -0.080 4.080 26 C -0.116 4.116 27 C 0.139 3.861 28 N -0.542 5.542 29 H 0.062 0.938 30 H 0.126 0.874 31 H 0.056 0.944 32 H 0.134 0.866 33 H 0.265 0.735 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.428 0.572 39 H 0.128 0.872 40 H 0.155 0.845 41 H 0.173 0.827 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.807 3.869 -8.900 11.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.225 6.225 3 C 0.148 3.852 4 C -0.150 4.150 5 C -0.036 4.036 6 C 0.412 3.588 7 O -0.422 6.422 8 N -0.270 5.270 9 C -0.428 4.428 10 H 0.119 0.881 11 C -0.223 4.223 12 N -0.548 5.548 13 Si 0.812 3.188 14 H -0.203 1.203 15 H -0.221 1.221 16 H -0.183 1.183 17 C 0.018 3.982 18 C -0.165 4.165 19 C 0.342 3.658 20 O -0.437 6.437 21 O -0.323 6.323 22 C -0.133 4.133 23 C -0.120 4.120 24 C -0.146 4.146 25 C -0.099 4.099 26 C -0.135 4.135 27 C 0.020 3.980 28 N -0.270 5.270 29 H 0.081 0.919 30 H 0.144 0.856 31 H 0.074 0.926 32 H 0.152 0.848 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.119 0.881 37 H 0.137 0.863 38 H 0.290 0.710 39 H 0.146 0.854 40 H 0.173 0.827 41 H 0.190 0.810 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.569 3.997 -8.199 11.853 hybrid contribution 1.310 -0.731 0.492 1.579 sum -6.259 3.266 -7.708 10.452 Atomic orbital electron populations 1.23108 0.75447 1.04765 1.02464 1.86238 1.24879 1.24085 1.87278 1.19815 0.88780 0.85310 0.91279 1.21191 0.91562 0.98877 1.03332 1.21930 0.95135 0.92196 0.94328 1.17318 0.85002 0.81348 0.75167 1.90419 1.74553 1.30875 1.46381 1.42550 1.43861 1.31865 1.08731 1.19634 1.06759 1.28673 0.87736 0.88092 1.26053 0.98146 0.98504 0.99563 1.69407 1.23411 1.48282 1.13726 0.85060 0.78046 0.78936 0.76778 1.20280 1.22055 1.18330 1.20940 0.97184 0.98971 0.81134 1.21792 1.04620 1.03019 0.87082 1.23238 0.76369 0.77477 0.88727 1.90708 1.37096 1.32825 1.83072 1.84515 1.59647 1.65030 1.23130 1.19912 0.93781 0.94123 1.05442 1.21421 1.01636 0.91416 0.97504 1.21299 0.93981 0.99087 1.00200 1.21307 0.94789 0.97882 0.95954 1.20957 1.00389 0.89798 1.02306 1.18740 0.89765 0.91232 0.98238 1.67124 1.39506 0.98034 1.22349 0.91926 0.85615 0.92560 0.84847 0.92504 0.90250 0.92648 0.88112 0.86324 0.71018 0.85414 0.82736 0.80988 0.82770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 10.35 113.37 1.17 2.10 16 2 O -0.32 -11.46 10.45 -89.04 -0.93 -12.39 16 3 C 0.34 13.95 7.49 85.18 0.64 14.59 16 4 C -0.13 -5.83 9.10 22.84 0.21 -5.62 16 5 C -0.02 -1.16 5.27 -18.49 -0.10 -1.25 16 6 C 0.62 31.37 3.78 86.74 0.33 31.70 16 7 O -0.54 -30.11 14.70 -4.05 -0.06 -30.17 16 8 N -0.54 -25.85 2.08 -638.98 -1.33 -27.18 16 9 C -0.30 -15.18 9.59 84.17 0.81 -14.37 16 10 H 0.10 4.69 7.86 -2.91 -0.02 4.66 16 11 C -0.02 -1.19 5.22 85.00 0.44 -0.75 16 12 N -0.91 -51.18 11.09 21.70 0.24 -50.94 16 13 Si 0.99 42.72 29.57 68.60 2.03 44.75 16 14 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 15 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 16 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 17 C 0.14 5.55 4.66 86.38 0.40 5.95 16 18 C -0.13 -4.03 6.13 29.85 0.18 -3.84 16 19 C 0.50 14.19 8.33 71.24 0.59 14.78 16 20 O -0.55 -18.54 16.74 21.97 0.37 -18.17 16 21 O -0.51 -10.71 13.42 -51.41 -0.69 -11.40 16 22 C -0.13 -5.54 5.90 -19.92 -0.12 -5.66 16 23 C -0.10 -3.91 9.26 22.23 0.21 -3.70 16 24 C -0.13 -3.61 9.96 22.08 0.22 -3.39 16 25 C -0.08 -1.91 9.94 22.03 0.22 -1.69 16 26 C -0.12 -3.32 9.99 22.36 0.22 -3.10 16 27 C 0.14 5.30 6.62 40.29 0.27 5.56 16 28 N -0.54 -20.82 9.00 -302.58 -2.72 -23.54 16 29 H 0.06 1.50 8.08 -2.39 -0.02 1.49 16 30 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.06 1.42 8.08 -2.39 -0.02 1.41 16 32 H 0.13 6.42 7.84 -2.91 -0.02 6.40 16 33 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.08 3.04 8.00 -2.39 -0.02 3.02 16 35 H 0.06 2.20 7.33 -2.39 -0.02 2.18 16 36 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.12 3.63 8.14 -2.38 -0.02 3.61 16 38 H 0.43 4.77 9.10 -74.06 -0.67 4.10 16 39 H 0.13 5.49 5.54 -2.91 -0.02 5.47 16 40 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 41 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 42 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -72.87 368.71 3.01 -69.86 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.41 Total: 27.88 kcal Atomic # 6 Polarization: 25.61 SS G_CDS: 5.70 Total: 31.31 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -3.81 Total: -101.66 kcal Atomic # 8 Polarization: -70.82 SS G_CDS: -1.31 Total: -72.13 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -72.87 3.01 -69.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599350787.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.792 kcal (2) G-P(sol) polarization free energy of solvation -72.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds