Wall clock time and date at job start Wed Apr 1 2020 02:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36810 * 125.66267 * 2 1 4 4 C 1.47138 * 125.91091 * 359.97438 * 3 2 1 5 5 O 1.21542 * 119.99718 * 180.32514 * 4 3 2 6 6 O 1.34811 * 120.00086 * 0.32650 * 4 3 2 7 7 C 1.38005 * 108.17603 * 180.28535 * 3 2 1 8 8 C 1.39421 * 107.45225 * 359.74081 * 7 3 2 9 9 C 1.36709 * 125.66086 * 179.83491 * 2 1 3 10 10 C 1.47326 * 125.89134 * 359.97435 * 9 2 1 11 11 O 1.21617 * 119.99736 * 4.65975 * 10 9 2 12 12 N 1.34773 * 120.00303 * 184.66614 * 10 9 2 13 13 C 1.46502 * 120.00146 * 174.96323 * 12 10 9 14 14 C 1.50697 * 109.47106 * 179.97438 * 13 12 10 15 15 C 1.38299 * 119.93132 * 269.72445 * 14 13 12 16 16 C 1.38108 * 120.06597 * 179.72622 * 15 14 13 17 17 C 1.38881 * 119.92643 * 0.57118 * 16 15 14 18 18 O 1.35756 * 120.06166 * 179.68304 * 17 16 15 19 19 C 1.34828 * 116.99529 * 174.48278 * 18 17 16 20 20 H 1.08001 * 120.00593 * 5.05071 * 19 18 17 21 21 C 1.38652 * 119.99985 * 185.05846 * 19 18 17 22 22 N 1.31558 * 120.00077 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00181 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47372 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46936 * 119.99805 * 23 21 19 26 26 H 1.48497 * 109.47348 * 239.99755 * 23 21 19 27 27 C 1.38880 * 119.86577 * 359.70567 * 17 16 15 28 28 C 1.38097 * 119.92938 * 359.97438 * 27 17 16 29 29 H 1.09008 * 109.46672 * 275.06904 * 1 2 3 30 30 H 1.09006 * 109.47307 * 35.06344 * 1 2 3 31 31 H 1.08993 * 109.47268 * 155.06765 * 1 2 3 32 32 H 0.96700 * 116.99786 * 180.02562 * 6 4 3 33 33 H 1.08003 * 126.27562 * 179.71549 * 7 3 2 34 34 H 1.07995 * 126.26974 * 180.02562 * 8 7 3 35 35 H 0.97001 * 120.00280 * 354.95275 * 12 10 9 36 36 H 1.09004 * 109.47031 * 299.99919 * 13 12 10 37 37 H 1.08998 * 109.47200 * 59.99329 * 13 12 10 38 38 H 1.07993 * 119.96463 * 359.97438 * 15 14 13 39 39 H 1.08002 * 120.03431 * 180.27398 * 16 15 14 40 40 H 0.96998 * 120.00347 * 179.97438 * 22 21 19 41 41 H 1.08002 * 120.02944 * 179.97438 * 27 17 16 42 42 H 1.07997 * 119.96076 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2626 1.1115 0.0000 4 6 1.7975 2.5075 -0.0005 5 8 2.6040 3.4167 -0.0065 6 8 0.4768 2.7780 0.0056 7 6 3.5788 0.6969 -0.0065 8 6 3.5780 -0.6974 -0.0046 9 6 2.2619 -1.1107 0.0032 10 6 1.7957 -2.5083 0.0078 11 8 0.6075 -2.7531 -0.0766 12 7 2.6860 -3.5154 0.1055 13 6 2.2175 -4.8986 0.2213 14 6 3.4029 -5.8244 0.3146 15 6 3.9548 -6.3569 -0.8363 16 6 5.0447 -7.2011 -0.7544 17 6 5.5791 -7.5244 0.4860 18 8 6.6464 -8.3591 0.5701 19 6 7.1864 -8.5409 1.7921 20 1 6.7200 -8.0985 2.6599 21 6 8.3406 -9.2959 1.9346 22 7 8.9086 -9.8351 0.8776 23 14 9.0892 -9.5472 3.6275 24 1 8.2661 -8.8419 4.6425 25 1 9.1270 -10.9982 3.9415 26 1 10.4700 -9.0011 3.6443 27 6 5.0190 -6.9925 1.6402 28 6 3.9333 -6.1437 1.5513 29 1 -0.3633 0.0908 1.0237 30 1 -0.3634 0.8412 -0.5904 31 1 -0.3633 -0.9318 -0.4332 32 1 0.2196 3.7101 0.0046 33 1 4.4499 1.3353 -0.0125 34 1 4.4483 -1.3368 -0.0080 35 1 3.6370 -3.3244 0.0992 36 1 1.6047 -5.0009 1.1170 37 1 1.6241 -5.1559 -0.6561 38 1 3.5355 -6.1092 -1.8002 39 1 5.4780 -7.6133 -1.6538 40 1 9.7163 -10.3630 0.9772 41 1 5.4322 -7.2425 2.6063 42 1 3.4977 -5.7294 2.4484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608082280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:34 Heat of formation + Delta-G solvation = -78.637492 kcal Electronic energy + Delta-G solvation = -27936.861970 eV Core-core repulsion = 23655.676413 eV Total energy + Delta-G solvation = -4281.185557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.01037 -40.22165 -39.43863 -38.88722 -36.92118 -36.60869 -34.76146 -33.16789 -32.40882 -30.90937 -30.31988 -29.53926 -26.96663 -26.25087 -25.28846 -24.07656 -22.37937 -22.10616 -20.76863 -20.50393 -20.00042 -18.56442 -18.23501 -18.09723 -17.22836 -16.84785 -16.54686 -16.13183 -15.63939 -15.07214 -14.86836 -14.59306 -14.45066 -14.24832 -14.19663 -13.85410 -13.74688 -13.54601 -13.41630 -13.21982 -12.90005 -12.83256 -12.66773 -12.30165 -12.18401 -12.01196 -11.72932 -11.45145 -11.28124 -11.03347 -10.85244 -10.73580 -10.50415 -10.19895 -9.47072 -9.24674 -9.21144 -8.95329 -8.74089 -8.33598 -7.38477 -6.56614 -4.15456 0.53196 1.68698 1.88640 2.08451 2.18589 2.55976 2.67914 3.04920 3.07633 3.07933 3.13270 3.27025 3.87459 4.35018 4.44518 4.52496 4.56430 4.91547 4.96840 4.98095 5.09315 5.10671 5.17107 5.33572 5.37777 5.58301 5.60095 5.66096 5.73479 5.81065 5.92762 6.07589 6.13964 6.29435 6.32547 6.44575 6.53962 6.54841 6.75261 6.90879 7.08933 7.21457 7.30979 7.37628 7.40722 7.66523 7.88018 7.97768 8.88773 9.56267 10.60782 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.018622 B = 0.001862 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.232762 B =15033.906758 C =15863.445278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.379 5.379 3 C -0.025 4.025 4 C 0.557 3.443 5 O -0.502 6.502 6 O -0.517 6.517 7 C -0.105 4.105 8 C -0.158 4.158 9 C 0.004 3.996 10 C 0.582 3.418 11 O -0.548 6.548 12 N -0.703 5.703 13 C 0.182 3.818 14 C -0.219 4.219 15 C -0.052 4.052 16 C -0.195 4.195 17 C 0.162 3.838 18 O -0.172 6.172 19 C -0.393 4.393 20 H 0.095 0.905 21 C 0.040 3.960 22 N -0.858 5.858 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.237 4.237 28 C -0.049 4.049 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.416 0.584 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.407 0.593 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.271 0.729 41 H 0.129 0.871 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.476 19.722 -1.122 24.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.052 5.052 3 C -0.139 4.139 4 C 0.401 3.599 5 O -0.390 6.390 6 O -0.330 6.330 7 C -0.131 4.131 8 C -0.183 4.183 9 C -0.116 4.116 10 C 0.368 3.632 11 O -0.427 6.427 12 N -0.354 5.354 13 C 0.060 3.940 14 C -0.220 4.220 15 C -0.071 4.071 16 C -0.215 4.215 17 C 0.107 3.893 18 O -0.074 6.074 19 C -0.469 4.469 20 H 0.112 0.888 21 C -0.165 4.165 22 N -0.492 5.492 23 Si 0.767 3.233 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.200 1.200 27 C -0.256 4.256 28 C -0.068 4.068 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.131 0.869 32 H 0.276 0.724 33 H 0.177 0.823 34 H 0.177 0.823 35 H 0.242 0.758 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.079 19.090 -1.382 24.366 hybrid contribution 0.691 0.600 0.934 1.307 sum -14.388 19.690 -0.448 24.391 Atomic orbital electron populations 1.22612 0.74742 1.06519 1.04553 1.43887 1.07501 1.04021 1.49796 1.19443 0.91039 0.83758 1.19691 1.19565 0.80100 0.87739 0.72512 1.90956 1.55444 1.45965 1.46609 1.84623 1.25957 1.36275 1.86109 1.21264 0.94135 0.94942 1.02748 1.21410 0.94897 0.95020 1.07012 1.20464 0.90649 0.87923 1.12536 1.17108 0.85879 0.83193 0.77040 1.90750 1.16086 1.84754 1.51146 1.46072 1.10043 1.06430 1.72816 1.20056 0.94378 0.77614 1.01949 1.19146 1.02222 1.06801 0.93874 1.20535 0.94342 0.95330 0.96926 1.20224 1.00452 1.05030 0.95755 1.19453 0.88103 0.88463 0.93325 1.83981 1.37544 1.52984 1.32938 1.21412 1.08659 1.33892 0.82967 0.88806 1.25333 0.95566 0.95911 0.99684 1.70042 1.19224 1.30826 1.29100 0.85623 0.79114 0.78593 0.79975 1.19015 1.20060 1.20029 1.21162 1.00683 1.04791 0.99005 1.20642 0.94519 0.95576 0.96029 0.90121 0.88634 0.86865 0.72426 0.82334 0.82326 0.75772 0.91241 0.91077 0.86888 0.86326 0.91876 0.85374 0.87345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 10.01 59.84 0.60 1.07 16 2 N -0.38 -3.93 3.17 -115.88 -0.37 -4.29 16 3 C -0.03 -0.26 6.87 -82.12 -0.56 -0.82 16 4 C 0.56 5.24 8.31 34.34 0.29 5.52 16 5 O -0.50 -5.96 17.66 -19.30 -0.34 -6.30 16 6 O -0.52 -3.04 10.92 -40.79 -0.45 -3.49 16 7 C -0.11 -1.02 10.60 -39.23 -0.42 -1.44 16 8 C -0.16 -1.50 10.32 -39.25 -0.40 -1.91 16 9 C 0.00 0.05 6.87 -82.10 -0.56 -0.52 16 10 C 0.58 7.12 7.79 -12.57 -0.10 7.02 16 11 O -0.55 -7.93 14.49 5.26 0.08 -7.85 16 12 N -0.70 -7.97 5.53 -62.60 -0.35 -8.31 16 13 C 0.18 2.28 5.80 -5.19 -0.03 2.25 16 14 C -0.22 -3.24 5.25 -104.58 -0.55 -3.79 16 15 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 16 C -0.20 -3.76 9.99 -39.39 -0.39 -4.16 16 17 C 0.16 3.62 6.65 -39.11 -0.26 3.36 16 18 O -0.17 -4.66 9.76 0.04 0.00 -4.66 16 19 C -0.39 -10.46 9.49 30.89 0.29 -10.17 16 20 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 22 N -0.86 -24.24 13.67 55.48 0.76 -23.48 16 23 Si 0.94 19.69 29.55 -169.99 -5.02 14.66 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 27 C -0.24 -4.70 9.17 -39.40 -0.36 -5.06 16 28 C -0.05 -0.79 9.69 -39.61 -0.38 -1.18 16 29 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 30 H 0.10 0.64 6.42 -51.93 -0.33 0.31 16 31 H 0.11 1.09 5.91 -51.93 -0.31 0.78 16 32 H 0.42 0.55 9.11 45.56 0.42 0.97 16 33 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.16 1.17 7.42 -52.49 -0.39 0.78 16 35 H 0.41 4.07 7.34 -40.82 -0.30 3.77 16 36 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 37 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 38 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 40 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.13 2.58 5.64 -52.49 -0.30 2.28 16 42 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 369.97 15.07 5.58 5.58 Total: -1.00 -33.06 369.97 -7.01 -40.07 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -3.57 Total: 8.15 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -3.33 Total: -10.07 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.04 Total: -36.09 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.71 Total: -22.30 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.06 -7.01 -40.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608082280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.567 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds