Wall clock time and date at job start Wed Apr 1 2020 02:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36810 * 125.66267 * 2 1 4 4 C 1.47138 * 125.91091 * 359.97438 * 3 2 1 5 5 O 1.21542 * 119.99718 * 180.32514 * 4 3 2 6 6 O 1.34811 * 120.00086 * 0.32650 * 4 3 2 7 7 C 1.38005 * 108.17603 * 180.28535 * 3 2 1 8 8 C 1.39421 * 107.45225 * 359.74081 * 7 3 2 9 9 C 1.36709 * 125.66086 * 179.83491 * 2 1 3 10 10 C 1.47326 * 125.89134 * 359.97435 * 9 2 1 11 11 O 1.21617 * 119.99736 * 4.65975 * 10 9 2 12 12 N 1.34773 * 120.00303 * 184.66614 * 10 9 2 13 13 C 1.46502 * 120.00146 * 174.96323 * 12 10 9 14 14 C 1.50697 * 109.47106 * 179.97438 * 13 12 10 15 15 C 1.38299 * 119.93132 * 269.72445 * 14 13 12 16 16 C 1.38108 * 120.06597 * 179.72622 * 15 14 13 17 17 C 1.38881 * 119.92643 * 0.57118 * 16 15 14 18 18 O 1.35756 * 120.06166 * 179.68304 * 17 16 15 19 19 C 1.34828 * 116.99529 * 174.48278 * 18 17 16 20 20 H 1.08001 * 120.00593 * 5.05071 * 19 18 17 21 21 C 1.38652 * 119.99985 * 185.05846 * 19 18 17 22 22 N 1.31558 * 120.00077 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00181 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47372 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46936 * 119.99805 * 23 21 19 26 26 H 1.48497 * 109.47348 * 239.99755 * 23 21 19 27 27 C 1.38880 * 119.86577 * 359.70567 * 17 16 15 28 28 C 1.38097 * 119.92938 * 359.97438 * 27 17 16 29 29 H 1.09008 * 109.46672 * 275.06904 * 1 2 3 30 30 H 1.09006 * 109.47307 * 35.06344 * 1 2 3 31 31 H 1.08993 * 109.47268 * 155.06765 * 1 2 3 32 32 H 0.96700 * 116.99786 * 180.02562 * 6 4 3 33 33 H 1.08003 * 126.27562 * 179.71549 * 7 3 2 34 34 H 1.07995 * 126.26974 * 180.02562 * 8 7 3 35 35 H 0.97001 * 120.00280 * 354.95275 * 12 10 9 36 36 H 1.09004 * 109.47031 * 299.99919 * 13 12 10 37 37 H 1.08998 * 109.47200 * 59.99329 * 13 12 10 38 38 H 1.07993 * 119.96463 * 359.97438 * 15 14 13 39 39 H 1.08002 * 120.03431 * 180.27398 * 16 15 14 40 40 H 0.96998 * 120.00347 * 179.97438 * 22 21 19 41 41 H 1.08002 * 120.02944 * 179.97438 * 27 17 16 42 42 H 1.07997 * 119.96076 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2626 1.1115 0.0000 4 6 1.7975 2.5075 -0.0005 5 8 2.6040 3.4167 -0.0065 6 8 0.4768 2.7780 0.0056 7 6 3.5788 0.6969 -0.0065 8 6 3.5780 -0.6974 -0.0046 9 6 2.2619 -1.1107 0.0032 10 6 1.7957 -2.5083 0.0078 11 8 0.6075 -2.7531 -0.0766 12 7 2.6860 -3.5154 0.1055 13 6 2.2175 -4.8986 0.2213 14 6 3.4029 -5.8244 0.3146 15 6 3.9548 -6.3569 -0.8363 16 6 5.0447 -7.2011 -0.7544 17 6 5.5791 -7.5244 0.4860 18 8 6.6464 -8.3591 0.5701 19 6 7.1864 -8.5409 1.7921 20 1 6.7200 -8.0985 2.6599 21 6 8.3406 -9.2959 1.9346 22 7 8.9086 -9.8351 0.8776 23 14 9.0892 -9.5472 3.6275 24 1 8.2661 -8.8419 4.6425 25 1 9.1270 -10.9982 3.9415 26 1 10.4700 -9.0011 3.6443 27 6 5.0190 -6.9925 1.6402 28 6 3.9333 -6.1437 1.5513 29 1 -0.3633 0.0908 1.0237 30 1 -0.3634 0.8412 -0.5904 31 1 -0.3633 -0.9318 -0.4332 32 1 0.2196 3.7101 0.0046 33 1 4.4499 1.3353 -0.0125 34 1 4.4483 -1.3368 -0.0080 35 1 3.6370 -3.3244 0.0992 36 1 1.6047 -5.0009 1.1170 37 1 1.6241 -5.1559 -0.6561 38 1 3.5355 -6.1092 -1.8002 39 1 5.4780 -7.6133 -1.6538 40 1 9.7163 -10.3630 0.9772 41 1 5.4322 -7.2425 2.6063 42 1 3.4977 -5.7294 2.4484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608082280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:33 Heat of formation + Delta-G solvation = -101.373261 kcal Electronic energy + Delta-G solvation = -27937.847867 eV Core-core repulsion = 23655.676413 eV Total energy + Delta-G solvation = -4282.171454 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.76328 -41.04230 -40.77160 -40.00870 -38.44792 -37.24863 -35.85960 -34.31059 -33.87130 -31.99593 -31.77308 -30.63816 -27.77186 -27.62265 -26.71351 -25.05090 -23.62171 -23.19391 -22.15620 -21.31936 -20.81142 -19.85565 -19.23411 -19.06803 -18.74500 -17.79446 -17.28189 -17.11606 -16.63778 -16.36645 -16.20830 -15.94667 -15.55401 -15.52854 -15.34036 -14.93463 -14.89894 -14.65108 -14.38710 -14.25571 -14.16118 -13.90200 -13.66961 -13.40656 -13.23782 -13.04168 -12.98176 -12.66370 -12.56190 -12.33443 -12.21996 -12.08263 -12.03222 -11.20169 -11.17532 -10.79669 -10.21011 -9.94506 -9.78150 -9.53554 -8.99678 -8.47079 -6.14992 -0.24253 0.53994 0.61017 0.91368 1.34114 1.37373 1.45108 1.54952 1.94477 1.96262 2.17993 2.20699 2.31202 2.86393 3.18699 3.50850 3.60246 3.77986 3.85515 3.90337 4.05967 4.20317 4.25853 4.34893 4.45043 4.48108 4.59480 4.72760 4.75783 4.83155 4.89314 4.98998 5.06885 5.16644 5.29450 5.29885 5.36943 5.50478 5.55510 5.71961 5.72802 5.76987 5.81260 6.03444 6.18820 6.46259 6.84768 6.98137 7.05782 7.77809 8.75895 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.018622 B = 0.001862 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.232762 B =15033.906758 C =15863.445278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.382 5.382 3 C -0.034 4.034 4 C 0.564 3.436 5 O -0.532 6.532 6 O -0.505 6.505 7 C -0.116 4.116 8 C -0.149 4.149 9 C -0.016 4.016 10 C 0.586 3.414 11 O -0.572 6.572 12 N -0.697 5.697 13 C 0.187 3.813 14 C -0.183 4.183 15 C -0.042 4.042 16 C -0.205 4.205 17 C 0.123 3.877 18 O -0.230 6.230 19 C -0.411 4.411 20 H 0.105 0.895 21 C -0.023 4.023 22 N -0.919 5.919 23 Si 1.017 2.983 24 H -0.250 1.250 25 H -0.271 1.271 26 H -0.269 1.269 27 C -0.244 4.244 28 C -0.043 4.043 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.437 0.563 33 H 0.169 0.831 34 H 0.179 0.821 35 H 0.415 0.585 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.149 0.851 39 H 0.114 0.886 40 H 0.272 0.728 41 H 0.119 0.881 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.695 22.136 -0.304 27.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.055 5.055 3 C -0.148 4.148 4 C 0.409 3.591 5 O -0.422 6.422 6 O -0.320 6.320 7 C -0.141 4.141 8 C -0.174 4.174 9 C -0.136 4.136 10 C 0.374 3.626 11 O -0.453 6.453 12 N -0.348 5.348 13 C 0.065 3.935 14 C -0.184 4.184 15 C -0.060 4.060 16 C -0.225 4.225 17 C 0.072 3.928 18 O -0.136 6.136 19 C -0.487 4.487 20 H 0.122 0.878 21 C -0.221 4.221 22 N -0.557 5.557 23 Si 0.837 3.163 24 H -0.173 1.173 25 H -0.196 1.196 26 H -0.195 1.195 27 C -0.264 4.264 28 C -0.062 4.062 29 H 0.107 0.893 30 H 0.129 0.871 31 H 0.119 0.881 32 H 0.301 0.699 33 H 0.187 0.813 34 H 0.196 0.804 35 H 0.252 0.748 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.166 0.834 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.137 0.863 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.373 21.556 -0.567 27.692 hybrid contribution 0.984 0.151 0.545 1.135 sum -16.389 21.708 -0.023 27.199 Atomic orbital electron populations 1.22675 0.73924 1.06507 1.05255 1.44029 1.08102 1.03854 1.49536 1.19713 0.91454 0.84259 1.19415 1.19437 0.80767 0.87097 0.71765 1.90949 1.56438 1.46623 1.48152 1.84569 1.23889 1.38361 1.85209 1.21519 0.94513 0.95327 1.02765 1.21682 0.94999 0.95183 1.05558 1.20395 0.91322 0.87535 1.14319 1.17170 0.85437 0.83659 0.76371 1.90747 1.17088 1.85149 1.52314 1.45837 1.10450 1.05765 1.72730 1.19982 0.92972 0.77554 1.02993 1.19451 1.01240 1.04807 0.92925 1.20900 0.92642 0.93438 0.99019 1.20460 1.01540 1.05775 0.94699 1.20020 0.87989 0.89384 0.95419 1.83951 1.40148 1.56196 1.33306 1.21865 1.09171 1.34131 0.83542 0.87817 1.26571 0.95898 0.95540 1.04041 1.70183 1.20431 1.33278 1.31793 0.84541 0.78229 0.78668 0.74878 1.17328 1.19577 1.19453 1.21247 1.01784 1.05484 0.97849 1.20958 0.93041 0.94169 0.98007 0.89313 0.87110 0.88091 0.69935 0.81333 0.80375 0.74822 0.90348 0.90171 0.83359 0.86789 0.91848 0.86287 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.82 10.01 127.77 1.28 2.10 16 2 N -0.38 -7.09 3.17 -520.54 -1.65 -8.74 16 3 C -0.03 -0.63 6.87 40.65 0.28 -0.35 16 4 C 0.56 9.52 8.31 70.16 0.58 10.10 16 5 O -0.53 -11.85 17.66 19.70 0.35 -11.50 16 6 O -0.51 -4.62 10.92 -57.22 -0.62 -5.24 16 7 C -0.12 -2.02 10.60 22.50 0.24 -1.78 16 8 C -0.15 -2.45 10.32 22.49 0.23 -2.21 16 9 C -0.02 -0.31 6.87 40.71 0.28 -0.03 16 10 C 0.59 12.65 7.79 86.63 0.68 13.32 16 11 O -0.57 -15.10 14.49 -4.08 -0.06 -15.16 16 12 N -0.70 -13.17 5.53 -470.21 -2.60 -15.78 16 13 C 0.19 3.87 5.80 85.63 0.50 4.37 16 14 C -0.18 -4.74 5.25 -19.84 -0.10 -4.84 16 15 C -0.04 -1.19 9.69 22.25 0.22 -0.97 16 16 C -0.21 -7.90 9.99 22.39 0.22 -7.67 16 17 C 0.12 5.66 6.65 22.58 0.15 5.81 16 18 O -0.23 -13.20 9.76 -22.79 -0.22 -13.42 16 19 C -0.41 -22.94 9.49 67.92 0.64 -22.29 16 20 H 0.10 5.27 5.20 -2.91 -0.02 5.26 16 21 C -0.02 -1.25 5.49 84.83 0.47 -0.79 16 22 N -0.92 -54.97 13.67 21.61 0.30 -54.67 16 23 Si 1.02 41.48 29.55 68.60 2.03 43.51 16 24 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 25 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 26 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 27 C -0.24 -9.62 9.17 22.39 0.21 -9.41 16 28 C -0.04 -1.28 9.69 22.25 0.22 -1.06 16 29 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.11 1.23 6.42 -2.38 -0.02 1.21 16 31 H 0.10 1.78 5.91 -2.39 -0.01 1.76 16 32 H 0.44 -0.08 9.11 -74.06 -0.67 -0.75 16 33 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 34 H 0.18 2.05 7.42 -2.91 -0.02 2.03 16 35 H 0.41 6.69 7.34 -92.71 -0.68 6.01 16 36 H 0.08 1.59 8.09 -2.38 -0.02 1.57 16 37 H 0.08 1.63 8.08 -2.39 -0.02 1.61 16 38 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 39 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 40 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 41 H 0.12 4.84 5.64 -2.91 -0.02 4.83 16 42 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -76.37 369.97 3.35 -73.02 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -0.24 Total: 23.70 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 6.08 Total: -15.71 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -3.96 Total: -79.19 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -0.56 Total: -45.32 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -76.37 3.35 -73.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608082280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.357 kcal (2) G-P(sol) polarization free energy of solvation -76.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds