Wall clock time and date at job start Wed Apr 1 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 117.00122 * 2 1 4 4 O 1.20829 * 119.99910 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00249 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47359 * 180.02562 * 5 3 2 7 7 N 1.46499 * 109.47254 * 180.02562 * 6 5 3 8 8 C 1.36814 * 120.00267 * 270.00385 * 7 6 5 9 9 H 1.07994 * 120.00108 * 125.68999 * 8 7 6 10 10 C 1.39073 * 119.99536 * 305.68886 * 8 7 6 11 11 N 1.31361 * 119.99764 * 184.28683 * 10 8 7 12 12 Si 1.86797 * 120.00287 * 4.29291 * 10 8 7 13 13 H 1.48497 * 109.47329 * 94.77441 * 12 10 8 14 14 H 1.48493 * 109.47221 * 214.77770 * 12 10 8 15 15 H 1.48500 * 109.47148 * 334.77482 * 12 10 8 16 16 C 1.34777 * 120.00095 * 90.00393 * 7 6 5 17 17 O 1.21697 * 119.99480 * 353.76208 * 16 7 6 18 18 C 1.46981 * 120.00522 * 173.76538 * 16 7 6 19 19 C 1.43208 * 119.99705 * 4.80074 * 18 16 7 20 20 N 8.14861 * 155.64667 * 18.19121 * 2 1 3 21 21 C 1.37891 * 120.00290 * 184.79940 * 18 16 7 22 22 C 1.46407 * 119.99697 * 183.51790 * 21 18 16 23 23 C 1.40264 * 120.13473 * 324.77667 * 22 21 18 24 24 C 1.36600 * 119.85637 * 179.72246 * 23 22 21 25 25 C 1.39122 * 120.14154 * 0.55649 * 24 23 22 26 26 O 1.35672 * 119.86699 * 179.73938 * 25 24 23 27 27 C 1.39130 * 120.26991 * 359.71984 * 25 24 23 28 28 C 1.36591 * 120.13944 * 359.97438 * 27 25 24 29 29 H 1.09004 * 109.46946 * 59.99921 * 1 2 3 30 30 H 1.08997 * 109.46969 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47278 * 300.00139 * 1 2 3 32 32 H 1.09000 * 109.46888 * 60.00273 * 5 3 2 33 33 H 1.09001 * 109.47296 * 300.00388 * 5 3 2 34 34 H 1.09000 * 109.46936 * 60.00255 * 6 5 3 35 35 H 1.09001 * 109.47195 * 300.00403 * 6 5 3 36 36 H 0.96996 * 119.99904 * 185.00586 * 11 10 8 37 37 H 1.07997 * 119.99777 * 3.78832 * 21 18 16 38 38 H 1.08001 * 120.07123 * 0.02562 * 23 22 21 39 39 H 1.08002 * 119.93288 * 180.27606 * 24 23 22 40 40 H 0.96702 * 114.00413 * 269.98244 * 26 25 24 41 41 H 1.08003 * 119.92700 * 179.97438 * 27 25 24 42 42 H 1.08004 * 120.06992 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4631 2.8188 0.0011 8 6 6.1464 2.8541 1.1858 9 1 6.9276 2.1343 1.3803 10 6 5.8347 3.8169 2.1397 11 7 6.5456 3.9047 3.2409 12 14 4.4052 4.9852 1.8553 13 1 3.1868 4.4453 2.5102 14 1 4.7298 6.3143 2.4325 15 1 4.1627 5.1248 0.3969 16 6 6.1360 2.8546 -1.1662 17 8 5.5396 2.7091 -2.2169 18 6 7.5901 3.0692 -1.1700 19 6 8.3070 3.1375 0.0678 20 7 8.8755 3.1922 1.0490 21 6 8.2639 3.2047 -2.3654 22 6 9.7215 3.3413 -2.3726 23 6 10.3681 4.0433 -1.3447 24 6 11.7289 4.1624 -1.3541 25 6 12.4724 3.5992 -2.3863 26 8 13.8232 3.7254 -2.3928 27 6 11.8363 2.9066 -3.4118 28 6 10.4767 2.7754 -3.4104 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.9563 0.7807 -0.8892 33 1 3.9557 0.7809 0.8908 34 1 3.6101 3.2360 0.8911 35 1 3.6107 3.2365 -0.8889 36 1 6.2849 4.5265 3.9382 37 1 7.7159 3.2145 -3.2960 38 1 9.7917 4.4844 -0.5450 39 1 12.2284 4.6988 -0.5608 40 1 14.1426 4.5117 -2.8562 41 1 12.4189 2.4720 -4.2106 42 1 9.9842 2.2372 -4.2068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001643854592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:29 Heat of formation + Delta-G solvation = -60.998494 kcal Electronic energy + Delta-G solvation = -29198.307549 eV Core-core repulsion = 24917.886876 eV Total energy + Delta-G solvation = -4280.420673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.31154 -39.89882 -39.20518 -37.23012 -36.41853 -35.74734 -35.26702 -32.84318 -32.45086 -31.18091 -31.11012 -28.96015 -27.64952 -25.14347 -24.86845 -23.41424 -22.66813 -21.12010 -20.60089 -20.02852 -18.54782 -18.19730 -17.55955 -16.75453 -16.52839 -16.39915 -15.82275 -15.72924 -15.34390 -15.00035 -14.53624 -14.33919 -14.16698 -13.92181 -13.74860 -13.60246 -13.28945 -12.85249 -12.66539 -12.64337 -12.46905 -12.22698 -12.14758 -12.03125 -11.89496 -11.82488 -11.51366 -11.35979 -11.27553 -10.83705 -10.70589 -10.44117 -10.31696 -10.14401 -9.87751 -9.52064 -9.39358 -9.09503 -8.85983 -8.07975 -7.78457 -6.54121 -4.46382 0.53550 1.40877 1.78136 2.43791 2.84781 3.03899 3.16504 3.20911 3.58308 3.65001 3.78267 3.99588 4.09883 4.18915 4.53597 4.72289 4.84909 4.87107 4.91382 4.92709 5.08298 5.11973 5.18340 5.31097 5.42362 5.44593 5.49593 5.58445 5.72169 5.84756 5.94558 6.00327 6.14234 6.20555 6.24735 6.38240 6.39924 6.50270 6.56405 6.64228 6.75551 7.23579 7.54463 7.82744 7.94722 8.05168 8.59379 8.75341 9.01876 9.37098 10.47668 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.014898 B = 0.003026 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.974735 B = 9250.093989 C =10526.886360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.125 4.125 6 C 0.119 3.881 7 N -0.453 5.453 8 C -0.369 4.369 9 H 0.112 0.888 10 C 0.081 3.919 11 N -0.831 5.831 12 Si 0.874 3.126 13 H -0.269 1.269 14 H -0.287 1.287 15 H -0.255 1.255 16 C 0.534 3.466 17 O -0.582 6.582 18 C -0.048 4.048 19 C 0.255 3.745 20 N -0.394 5.394 21 C -0.012 4.012 22 C -0.079 4.079 23 C -0.083 4.083 24 C -0.141 4.141 25 C 0.106 3.894 26 O -0.500 6.500 27 C -0.150 4.150 28 C -0.080 4.080 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.277 0.723 37 H 0.156 0.844 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.388 0.612 41 H 0.129 0.871 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.263 -2.369 -11.160 11.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.399 6.399 5 C -0.163 4.163 6 C -0.004 4.004 7 N -0.172 5.172 8 C -0.496 4.496 9 H 0.129 0.871 10 C -0.131 4.131 11 N -0.463 5.463 12 Si 0.701 3.299 13 H -0.195 1.195 14 H -0.213 1.213 15 H -0.179 1.179 16 C 0.324 3.676 17 O -0.466 6.466 18 C -0.054 4.054 19 C -0.058 4.058 20 N -0.071 5.071 21 C -0.037 4.037 22 C -0.080 4.080 23 C -0.102 4.102 24 C -0.159 4.159 25 C 0.062 3.938 26 O -0.310 6.310 27 C -0.168 4.168 28 C -0.098 4.098 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.173 0.827 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.244 0.756 41 H 0.147 0.853 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.624 -2.454 -9.605 10.255 hybrid contribution -1.327 1.002 -0.183 1.673 sum 1.296 -1.453 -9.788 9.980 Atomic orbital electron populations 1.23209 0.77023 1.03287 1.02411 1.86537 1.22981 1.33959 1.84383 1.24007 0.92308 0.81041 0.71595 1.90648 1.67390 1.36345 1.45532 1.21822 0.86185 1.01725 1.06597 1.21513 0.83358 0.92992 1.02530 1.43513 1.03779 1.64110 1.05774 1.19317 1.20846 1.16296 0.93111 0.87061 1.25547 0.96475 0.95465 0.95662 1.69678 1.35321 1.34935 1.06370 0.86939 0.82080 0.80577 0.80264 1.19501 1.21339 1.17916 1.17977 0.85792 0.80040 0.83809 1.90708 1.69221 1.55270 1.31449 1.18512 0.92982 1.06155 0.87721 1.24655 0.92695 0.96076 0.92342 1.81189 1.13124 1.05045 1.07774 1.22767 0.91262 0.92222 0.97470 1.19124 0.92972 1.00071 0.95787 1.21514 0.94444 0.97057 0.97176 1.21122 0.94114 1.01365 0.99330 1.18733 0.82568 0.98043 0.94460 1.84766 1.17794 1.49138 1.79316 1.21052 0.94889 1.01938 0.98941 1.20968 0.93191 0.98189 0.97480 0.92057 0.88391 0.92077 0.87135 0.86760 0.91252 0.89950 0.91211 0.82668 0.84482 0.85283 0.75574 0.85299 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.35 10.57 -39.27 -0.41 -5.77 16 3 C 0.47 8.08 7.96 36.00 0.29 8.36 16 4 O -0.51 -10.07 15.73 -18.75 -0.29 -10.37 16 5 C -0.12 -2.20 6.13 -27.89 -0.17 -2.37 16 6 C 0.12 2.49 2.87 -4.04 -0.01 2.48 16 7 N -0.45 -10.13 2.07 -116.19 -0.24 -10.37 16 8 C -0.37 -9.06 6.73 -15.02 -0.10 -9.16 16 9 H 0.11 2.98 6.08 -52.49 -0.32 2.66 16 10 C 0.08 2.07 5.50 -17.44 -0.10 1.97 16 11 N -0.83 -22.41 13.95 55.50 0.77 -21.63 16 12 Si 0.87 20.28 24.84 -169.99 -4.22 16.06 16 13 H -0.27 -6.19 7.10 56.52 0.40 -5.79 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.26 -5.88 6.31 56.52 0.36 -5.52 16 16 C 0.53 11.32 7.57 -12.72 -0.10 11.23 16 17 O -0.58 -12.58 15.96 5.19 0.08 -12.49 16 18 C -0.05 -0.91 5.88 -104.55 -0.62 -1.52 16 19 C 0.25 5.39 7.86 -22.49 -0.18 5.22 16 20 N -0.39 -9.14 16.66 41.81 0.70 -8.45 16 21 C -0.01 -0.19 9.44 -36.42 -0.34 -0.53 16 22 C -0.08 -1.11 5.58 -105.09 -0.59 -1.70 16 23 C -0.08 -1.27 8.26 -39.41 -0.33 -1.59 16 24 C -0.14 -1.91 9.92 -39.85 -0.40 -2.31 16 25 C 0.11 1.29 6.72 -38.92 -0.26 1.03 16 26 O -0.50 -5.25 13.48 -18.72 -0.25 -5.51 16 27 C -0.15 -1.65 9.92 -39.85 -0.40 -2.04 16 28 C -0.08 -0.92 9.75 -39.41 -0.38 -1.30 16 29 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 33 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 34 H 0.07 1.54 3.62 -51.93 -0.19 1.35 16 35 H 0.08 1.76 7.47 -51.93 -0.39 1.37 16 36 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.16 2.04 7.61 -52.49 -0.40 1.64 16 38 H 0.14 2.35 5.30 -52.49 -0.28 2.07 16 39 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.39 2.04 9.06 45.56 0.41 2.46 16 41 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 42 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 366.75 15.07 5.53 5.53 Total: -1.00 -31.99 366.75 -4.67 -36.67 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -3.72 Total: 7.10 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -2.61 Total: 9.22 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 1.23 Total: -40.45 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -0.88 Total: -34.13 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.22 Total: 16.06 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.99 -4.67 -36.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643854592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.331 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds