Wall clock time and date at job start Wed Apr 1 2020 03:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 117.00122 * 2 1 4 4 O 1.20829 * 119.99910 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00249 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47359 * 180.02562 * 5 3 2 7 7 N 1.46499 * 109.47254 * 180.02562 * 6 5 3 8 8 C 1.36814 * 120.00267 * 270.00385 * 7 6 5 9 9 H 1.07994 * 120.00108 * 125.68999 * 8 7 6 10 10 C 1.39073 * 119.99536 * 305.68886 * 8 7 6 11 11 N 1.31361 * 119.99764 * 184.28683 * 10 8 7 12 12 Si 1.86797 * 120.00287 * 4.29291 * 10 8 7 13 13 H 1.48497 * 109.47329 * 94.77441 * 12 10 8 14 14 H 1.48493 * 109.47221 * 214.77770 * 12 10 8 15 15 H 1.48500 * 109.47148 * 334.77482 * 12 10 8 16 16 C 1.34777 * 120.00095 * 90.00393 * 7 6 5 17 17 O 1.21697 * 119.99480 * 353.76208 * 16 7 6 18 18 C 1.46981 * 120.00522 * 173.76538 * 16 7 6 19 19 C 1.43208 * 119.99705 * 4.80074 * 18 16 7 20 20 N 8.14861 * 155.64667 * 18.19121 * 2 1 3 21 21 C 1.37891 * 120.00290 * 184.79940 * 18 16 7 22 22 C 1.46407 * 119.99697 * 183.51790 * 21 18 16 23 23 C 1.40264 * 120.13473 * 324.77667 * 22 21 18 24 24 C 1.36600 * 119.85637 * 179.72246 * 23 22 21 25 25 C 1.39122 * 120.14154 * 0.55649 * 24 23 22 26 26 O 1.35672 * 119.86699 * 179.73938 * 25 24 23 27 27 C 1.39130 * 120.26991 * 359.71984 * 25 24 23 28 28 C 1.36591 * 120.13944 * 359.97438 * 27 25 24 29 29 H 1.09004 * 109.46946 * 59.99921 * 1 2 3 30 30 H 1.08997 * 109.46969 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47278 * 300.00139 * 1 2 3 32 32 H 1.09000 * 109.46888 * 60.00273 * 5 3 2 33 33 H 1.09001 * 109.47296 * 300.00388 * 5 3 2 34 34 H 1.09000 * 109.46936 * 60.00255 * 6 5 3 35 35 H 1.09001 * 109.47195 * 300.00403 * 6 5 3 36 36 H 0.96996 * 119.99904 * 185.00586 * 11 10 8 37 37 H 1.07997 * 119.99777 * 3.78832 * 21 18 16 38 38 H 1.08001 * 120.07123 * 0.02562 * 23 22 21 39 39 H 1.08002 * 119.93288 * 180.27606 * 24 23 22 40 40 H 0.96702 * 114.00413 * 269.98244 * 26 25 24 41 41 H 1.08003 * 119.92700 * 179.97438 * 27 25 24 42 42 H 1.08004 * 120.06992 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4631 2.8188 0.0011 8 6 6.1464 2.8541 1.1858 9 1 6.9276 2.1343 1.3803 10 6 5.8347 3.8169 2.1397 11 7 6.5456 3.9047 3.2409 12 14 4.4052 4.9852 1.8553 13 1 3.1868 4.4453 2.5102 14 1 4.7298 6.3143 2.4325 15 1 4.1627 5.1248 0.3969 16 6 6.1360 2.8546 -1.1662 17 8 5.5396 2.7091 -2.2169 18 6 7.5901 3.0692 -1.1700 19 6 8.3070 3.1375 0.0678 20 7 8.8755 3.1922 1.0490 21 6 8.2639 3.2047 -2.3654 22 6 9.7215 3.3413 -2.3726 23 6 10.3681 4.0433 -1.3447 24 6 11.7289 4.1624 -1.3541 25 6 12.4724 3.5992 -2.3863 26 8 13.8232 3.7254 -2.3928 27 6 11.8363 2.9066 -3.4118 28 6 10.4767 2.7754 -3.4104 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.9563 0.7807 -0.8892 33 1 3.9557 0.7809 0.8908 34 1 3.6101 3.2360 0.8911 35 1 3.6107 3.2365 -0.8889 36 1 6.2849 4.5265 3.9382 37 1 7.7159 3.2145 -3.2960 38 1 9.7917 4.4844 -0.5450 39 1 12.2284 4.6988 -0.5608 40 1 14.1426 4.5117 -2.8562 41 1 12.4189 2.4720 -4.2106 42 1 9.9842 2.2372 -4.2068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001643854592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:28 Heat of formation + Delta-G solvation = -82.710136 kcal Electronic energy + Delta-G solvation = -29199.249036 eV Core-core repulsion = 24917.886876 eV Total energy + Delta-G solvation = -4281.362160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.67498 -41.09998 -40.58364 -38.33479 -37.72530 -37.32555 -36.78868 -34.31813 -34.18324 -32.65857 -32.17160 -30.14772 -28.71462 -26.95275 -26.22049 -24.71791 -23.71102 -22.29835 -21.95806 -21.66612 -19.94497 -19.39768 -18.93282 -18.36264 -17.87689 -17.66457 -17.14550 -16.83620 -16.54497 -16.38124 -16.01587 -15.93414 -15.53393 -15.27611 -15.07974 -14.68058 -14.53786 -14.49470 -14.15153 -14.03630 -13.91596 -13.67233 -13.53417 -13.31403 -13.19857 -13.11217 -12.96674 -12.78126 -12.73502 -12.41858 -12.01922 -11.83945 -11.66506 -11.62570 -11.38773 -11.20456 -10.74207 -10.67791 -10.07810 -9.70260 -9.11907 -8.48115 -6.40859 -0.66955 0.42302 0.62646 1.08750 1.17487 1.27099 1.33075 1.61284 1.96256 2.09823 2.18199 2.53880 2.68151 2.84573 3.02975 3.26521 3.38568 3.62814 3.74280 3.85437 3.89539 3.96604 4.08302 4.28599 4.30871 4.32248 4.36850 4.42974 4.53027 4.66824 4.69362 4.81328 4.86056 4.93259 4.99181 5.06642 5.29060 5.34054 5.40861 5.44519 5.53956 5.81538 6.02083 6.08155 6.64517 6.85565 6.86683 7.04663 7.23188 7.60095 8.56970 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.014898 B = 0.003026 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.974735 B = 9250.093989 C =10526.886360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.474 3.526 4 O -0.540 6.540 5 C -0.118 4.118 6 C 0.119 3.881 7 N -0.470 5.470 8 C -0.348 4.348 9 H 0.085 0.915 10 C 0.047 3.953 11 N -0.874 5.874 12 Si 0.918 3.082 13 H -0.267 1.267 14 H -0.291 1.291 15 H -0.254 1.254 16 C 0.544 3.456 17 O -0.585 6.585 18 C -0.111 4.111 19 C 0.276 3.724 20 N -0.449 5.449 21 C 0.060 3.940 22 C -0.113 4.113 23 C -0.094 4.094 24 C -0.162 4.162 25 C 0.123 3.877 26 O -0.507 6.507 27 C -0.148 4.148 28 C -0.057 4.057 29 H 0.064 0.936 30 H 0.136 0.864 31 H 0.059 0.941 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.276 0.724 37 H 0.186 0.814 38 H 0.108 0.892 39 H 0.127 0.873 40 H 0.414 0.586 41 H 0.163 0.837 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 -3.547 -14.865 15.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.319 3.681 4 O -0.430 6.430 5 C -0.156 4.156 6 C -0.003 4.003 7 N -0.191 5.191 8 C -0.476 4.476 9 H 0.103 0.897 10 C -0.162 4.162 11 N -0.508 5.508 12 Si 0.745 3.255 13 H -0.193 1.193 14 H -0.218 1.218 15 H -0.178 1.178 16 C 0.335 3.665 17 O -0.471 6.471 18 C -0.118 4.118 19 C -0.035 4.035 20 N -0.127 5.127 21 C 0.036 3.964 22 C -0.113 4.113 23 C -0.113 4.113 24 C -0.181 4.181 25 C 0.078 3.922 26 O -0.322 6.322 27 C -0.166 4.166 28 C -0.074 4.074 29 H 0.083 0.917 30 H 0.154 0.846 31 H 0.078 0.922 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.203 0.797 38 H 0.126 0.874 39 H 0.145 0.855 40 H 0.274 0.726 41 H 0.181 0.819 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.194 -3.638 -13.340 14.191 hybrid contribution -1.252 1.316 0.666 1.935 sum 1.941 -2.322 -12.673 13.029 Atomic orbital electron populations 1.23599 0.74637 1.05911 1.02561 1.86512 1.25224 1.32256 1.83658 1.23789 0.92032 0.81359 0.70960 1.90638 1.67904 1.37401 1.47059 1.21665 0.86978 0.99592 1.07398 1.21422 0.82493 0.95037 1.01392 1.43529 1.04262 1.65850 1.05417 1.18934 1.19959 1.14965 0.93701 0.89748 1.25992 0.97991 0.96509 0.95666 1.69768 1.37030 1.36538 1.07494 0.86256 0.80271 0.79024 0.79968 1.19313 1.21835 1.17813 1.18154 0.86531 0.78554 0.83272 1.90686 1.69711 1.55414 1.31247 1.18377 0.92102 1.13133 0.88145 1.24996 0.91883 0.94303 0.92358 1.81171 1.14524 1.07915 1.09121 1.23226 0.91915 0.84373 0.96887 1.19187 0.92474 1.02450 0.97186 1.21369 0.95098 0.97965 0.96869 1.21191 0.93767 1.02663 1.00480 1.18857 0.83156 0.96460 0.93694 1.84699 1.16683 1.50770 1.80002 1.21419 0.94962 1.01047 0.99171 1.21346 0.93367 0.96188 0.96539 0.91730 0.84555 0.92198 0.85848 0.86413 0.92820 0.90479 0.91339 0.79720 0.87427 0.85511 0.72552 0.81924 0.81119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.71 16 2 O -0.36 -10.07 10.57 -51.45 -0.54 -10.61 16 3 C 0.47 16.03 7.96 71.23 0.57 16.60 16 4 O -0.54 -21.06 15.73 21.96 0.35 -20.71 16 5 C -0.12 -4.11 6.13 29.85 0.18 -3.93 16 6 C 0.12 5.03 2.87 86.38 0.25 5.28 16 7 N -0.47 -21.37 2.07 -639.74 -1.32 -22.69 16 8 C -0.35 -17.75 6.73 84.12 0.57 -17.19 16 9 H 0.09 4.77 6.08 -2.91 -0.02 4.75 16 10 C 0.05 2.48 5.50 84.96 0.47 2.94 16 11 N -0.87 -49.52 13.95 21.69 0.30 -49.22 16 12 Si 0.92 43.24 24.84 68.60 1.70 44.95 16 13 H -0.27 -12.35 7.10 99.48 0.71 -11.64 16 14 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 15 H -0.25 -11.76 6.31 99.48 0.63 -11.13 16 16 C 0.54 22.91 7.57 86.53 0.65 23.57 16 17 O -0.59 -24.41 15.96 -4.34 -0.07 -24.48 16 18 C -0.11 -4.22 5.88 -19.82 -0.12 -4.34 16 19 C 0.28 12.19 7.86 88.34 0.69 12.88 16 20 N -0.45 -22.12 16.66 19.00 0.32 -21.80 16 21 C 0.06 1.67 9.44 24.32 0.23 1.90 16 22 C -0.11 -2.89 5.58 -20.17 -0.11 -3.01 16 23 C -0.09 -2.85 8.26 22.38 0.18 -2.66 16 24 C -0.16 -4.30 9.92 22.10 0.22 -4.08 16 25 C 0.12 2.62 6.72 22.70 0.15 2.77 16 26 O -0.51 -8.97 13.48 -89.89 -1.21 -10.18 16 27 C -0.15 -2.54 9.92 22.10 0.22 -2.32 16 28 C -0.06 -1.03 9.75 22.38 0.22 -0.81 16 29 H 0.06 1.27 8.13 -2.38 -0.02 1.25 16 30 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 32 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16 33 H 0.12 4.01 8.14 -2.39 -0.02 4.00 16 34 H 0.05 2.42 3.62 -2.39 -0.01 2.41 16 35 H 0.08 3.29 7.47 -2.39 -0.02 3.28 16 36 H 0.28 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.19 4.04 7.61 -2.91 -0.02 4.02 16 38 H 0.11 3.91 5.30 -2.91 -0.02 3.89 16 39 H 0.13 3.28 8.06 -2.91 -0.02 3.25 16 40 H 0.41 2.84 9.06 -74.06 -0.67 2.17 16 41 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 42 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -73.15 366.75 5.44 -67.70 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.35 Total: 17.72 kcal Atomic # 6 Polarization: 23.75 SS G_CDS: 5.57 Total: 29.32 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -0.70 Total: -93.71 kcal Atomic # 8 Polarization: -64.50 SS G_CDS: -1.48 Total: -65.98 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.70 Total: 44.95 kcal Total: -73.15 5.44 -67.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643854592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.009 kcal (2) G-P(sol) polarization free energy of solvation -73.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds