Wall clock time and date at job start Wed Apr 1 2020 02:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34818 * 117.00573 * 2 1 4 4 O 1.21537 * 119.99549 * 0.02562 * 3 2 1 5 5 C 1.47116 * 120.00228 * 179.97438 * 3 2 1 6 6 C 1.38016 * 125.90880 * 179.97438 * 5 3 2 7 7 C 1.39402 * 107.45376 * 179.97438 * 6 5 3 8 8 C 1.37978 * 107.47943 * 0.02562 * 7 6 5 9 9 C 1.47282 * 125.88902 * 179.97438 * 8 7 6 10 10 O 1.21631 * 119.99719 * 184.75735 * 9 8 7 11 11 N 1.34771 * 120.00202 * 4.75883 * 9 8 7 12 12 C 1.39870 * 119.99797 * 171.80567 * 11 9 8 13 13 C 1.38959 * 120.00082 * 206.36531 * 12 11 9 14 14 C 1.37990 * 119.99140 * 180.02562 * 13 12 11 15 15 C 1.38917 * 120.00779 * 359.97438 * 14 13 12 16 16 O 1.35771 * 119.99852 * 179.97438 * 15 14 13 17 17 C 1.34811 * 116.99729 * 351.48292 * 16 15 14 18 18 H 1.07995 * 120.00242 * 5.36685 * 17 16 15 19 19 C 1.38640 * 119.99579 * 185.37337 * 17 16 15 20 20 N 1.31569 * 120.00179 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99480 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47068 * 90.00098 * 21 19 17 23 23 H 1.48501 * 109.46870 * 209.99413 * 21 19 17 24 24 H 1.48491 * 109.47447 * 329.99482 * 21 19 17 25 25 C 1.38925 * 120.00627 * 0.25632 * 15 14 13 26 26 C 1.37991 * 120.00364 * 359.48848 * 25 15 14 27 27 N 1.36708 * 108.21549 * 0.26259 * 8 7 6 28 28 C 1.46500 * 125.66327 * 179.71806 * 27 8 7 29 29 H 1.09001 * 109.47699 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47396 * 299.99893 * 1 2 3 31 31 H 1.09003 * 109.47027 * 60.00327 * 1 2 3 32 32 H 1.08003 * 126.27361 * 359.97438 * 6 5 3 33 33 H 1.08002 * 126.26323 * 180.02562 * 7 6 5 34 34 H 0.96996 * 120.00234 * 351.80232 * 11 9 8 35 35 H 1.07994 * 120.00446 * 0.02562 * 13 12 11 36 36 H 1.08003 * 119.99408 * 179.97438 * 14 13 12 37 37 H 0.96999 * 119.99825 * 179.97438 * 20 19 17 38 38 H 1.07999 * 119.99774 * 179.74663 * 25 15 14 39 39 H 1.07998 * 119.99897 * 180.23588 * 26 25 15 40 40 H 1.09000 * 109.47576 * 94.22326 * 28 27 8 41 41 H 1.09005 * 109.47200 * 214.22358 * 28 27 8 42 42 H 1.08999 * 109.47481 * 334.22313 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0641 1.2012 0.0000 4 8 1.4022 2.2205 0.0005 5 6 3.5333 1.2781 0.0006 6 6 4.2832 2.4367 0.0001 7 6 5.6268 2.0652 0.0015 8 6 5.6754 0.6862 0.0022 9 6 6.8984 -0.1345 0.0032 10 8 6.8183 -1.3451 -0.0836 11 7 8.1060 0.4557 0.1003 12 6 9.2538 -0.3246 0.2738 13 6 10.3705 0.2124 0.9027 14 6 11.5030 -0.5574 1.0733 15 6 11.5266 -1.8692 0.6168 16 8 12.6411 -2.6263 0.7843 17 6 13.7447 -1.9988 1.2378 18 1 13.6932 -0.9611 1.5325 19 6 14.9458 -2.6856 1.3257 20 7 15.0084 -3.9499 0.9671 21 14 16.4751 -1.8159 1.9535 22 1 16.5635 -1.9722 3.4276 23 1 17.6787 -2.4117 1.3196 24 1 16.3991 -0.3727 1.6123 25 6 10.4119 -2.4046 -0.0163 26 6 9.2774 -1.6369 -0.1824 27 7 4.3928 0.2134 -0.0047 28 6 4.0031 -1.1988 -0.0123 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.8994 3.4463 -0.0011 33 1 6.4746 2.7342 0.0020 34 1 8.1793 1.4216 0.0498 35 1 10.3521 1.2321 1.2580 36 1 12.3711 -0.1399 1.5617 37 1 15.8488 -4.4304 1.0283 38 1 10.4318 -3.4232 -0.3748 39 1 8.4096 -2.0544 -0.6711 40 1 3.8296 -1.5334 1.0105 41 1 3.0895 -1.3206 -0.5943 42 1 4.8002 -1.7934 -0.4587 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645801401.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:25 Heat of formation + Delta-G solvation = -54.524654 kcal Electronic energy + Delta-G solvation = -28258.784050 eV Core-core repulsion = 23978.644104 eV Total energy + Delta-G solvation = -4280.139946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.03807 -40.51769 -39.79937 -38.58013 -36.91592 -36.50935 -34.39841 -33.08058 -32.22299 -30.70659 -30.24961 -28.52415 -27.53845 -26.92054 -25.45251 -24.29264 -22.51624 -22.18725 -21.37455 -20.34410 -19.90796 -18.46432 -18.13487 -17.73050 -17.31120 -16.97405 -16.87704 -16.20796 -15.85380 -15.31670 -14.77533 -14.60689 -14.46789 -14.28868 -13.89979 -13.71878 -13.61940 -13.59905 -13.44627 -13.25110 -12.83755 -12.72548 -12.58292 -12.54354 -12.19230 -11.90947 -11.68402 -11.60366 -11.29474 -11.17617 -11.07860 -10.83572 -10.49368 -9.86544 -9.63343 -9.30565 -9.22694 -8.84047 -8.71429 -8.25339 -6.95994 -6.46766 -4.04863 0.53269 1.61446 1.99673 2.14356 2.24798 2.31793 2.68486 3.09256 3.11865 3.14028 3.17234 3.24792 3.94949 4.22489 4.39934 4.53327 4.56677 4.64689 4.73627 4.79531 5.02036 5.06083 5.06939 5.09543 5.31699 5.43151 5.49760 5.56701 5.58730 5.75197 5.82738 6.04596 6.06477 6.15788 6.24263 6.44091 6.54451 6.75850 6.81114 6.91263 7.09383 7.17718 7.26578 7.36790 7.59261 7.73439 7.97229 8.11925 8.98377 9.68383 10.70973 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.035595 B = 0.001806 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.440445 B =15503.691744 C =16136.238595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.360 6.360 3 C 0.539 3.461 4 O -0.495 6.495 5 C -0.023 4.023 6 C -0.106 4.106 7 C -0.162 4.162 8 C 0.009 3.991 9 C 0.577 3.423 10 O -0.526 6.526 11 N -0.636 5.636 12 C 0.033 3.967 13 C -0.090 4.090 14 C -0.217 4.217 15 C 0.146 3.854 16 O -0.176 6.176 17 C -0.392 4.392 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.179 4.179 26 C -0.080 4.080 27 N -0.377 5.377 28 C 0.054 3.946 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.407 0.593 35 H 0.112 0.888 36 H 0.132 0.868 37 H 0.270 0.730 38 H 0.121 0.879 39 H 0.147 0.853 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.573 10.817 -2.157 26.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.277 6.277 3 C 0.383 3.617 4 O -0.382 6.382 5 C -0.137 4.137 6 C -0.132 4.132 7 C -0.187 4.187 8 C -0.112 4.112 9 C 0.365 3.635 10 O -0.405 6.405 11 N -0.279 5.279 12 C -0.060 4.060 13 C -0.110 4.110 14 C -0.237 4.237 15 C 0.092 3.908 16 O -0.079 6.079 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.198 4.198 26 C -0.100 4.100 27 N -0.049 5.049 28 C -0.086 4.086 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.176 0.824 33 H 0.175 0.825 34 H 0.242 0.758 35 H 0.130 0.870 36 H 0.150 0.850 37 H 0.080 0.920 38 H 0.139 0.861 39 H 0.164 0.836 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -23.806 9.420 -2.247 25.700 hybrid contribution 0.564 1.069 0.438 1.285 sum -23.242 10.488 -1.809 25.563 Atomic orbital electron populations 1.23329 0.75462 1.04038 1.02869 1.86612 1.24103 1.32431 1.84533 1.19883 0.86797 0.81859 0.73119 1.90891 1.65297 1.35811 1.46246 1.19497 0.86724 0.88075 1.19423 1.21216 0.91926 0.97001 1.03017 1.21338 0.97507 0.92202 1.07690 1.20360 0.84874 0.93515 1.12423 1.17033 0.82139 0.86655 0.77715 1.90687 1.86197 1.13793 1.49797 1.42728 1.04445 1.10242 1.70469 1.17284 0.86820 0.93046 1.08821 1.20430 0.92566 0.99186 0.98830 1.20964 0.99321 0.95119 1.08296 1.19472 0.88638 0.89989 0.92677 1.83985 1.16110 1.34799 1.73044 1.21317 0.85067 0.96820 1.43600 0.89057 1.25297 0.98368 0.95887 0.97008 1.70044 1.27118 1.08482 1.43933 0.85710 0.79774 0.79048 0.78877 1.19896 1.20260 1.19187 1.20231 0.92404 1.01120 1.06090 1.21221 0.97936 0.92441 0.98408 1.43904 1.04256 1.07321 1.49462 1.22655 1.04012 0.77157 1.04783 0.87745 0.91578 0.91598 0.82403 0.82511 0.75775 0.86963 0.85039 0.91989 0.86089 0.83593 0.89899 0.88639 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.57 101.05 1.07 1.27 16 2 O -0.36 -3.08 8.04 -40.81 -0.33 -3.41 16 3 C 0.54 5.71 7.94 34.33 0.27 5.98 16 4 O -0.50 -6.14 16.67 -19.29 -0.32 -6.46 16 5 C -0.02 -0.25 6.87 -82.11 -0.56 -0.81 16 6 C -0.11 -1.00 10.60 -39.23 -0.42 -1.42 16 7 C -0.16 -1.46 10.32 -39.24 -0.40 -1.87 16 8 C 0.01 0.10 6.87 -82.11 -0.56 -0.46 16 9 C 0.58 7.81 7.69 -12.59 -0.10 7.71 16 10 O -0.53 -8.47 11.37 5.25 0.06 -8.41 16 11 N -0.64 -8.19 5.34 -10.84 -0.06 -8.25 16 12 C 0.03 0.55 6.46 -83.66 -0.54 0.01 16 13 C -0.09 -1.53 9.94 -39.41 -0.39 -1.92 16 14 C -0.22 -4.49 9.15 -39.42 -0.36 -4.85 16 15 C 0.15 3.47 6.64 -39.08 -0.26 3.21 16 16 O -0.18 -4.95 9.75 0.04 0.00 -4.95 16 17 C -0.39 -10.72 9.48 30.88 0.29 -10.43 16 18 H 0.09 2.28 5.23 -52.49 -0.27 2.01 16 19 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 20 N -0.86 -24.98 13.67 55.48 0.76 -24.22 16 21 Si 0.94 20.13 29.55 -169.99 -5.02 15.11 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 25 C -0.18 -3.82 9.98 -39.42 -0.39 -4.21 16 26 C -0.08 -1.52 8.82 -39.41 -0.35 -1.87 16 27 N -0.38 -4.12 3.17 -115.89 -0.37 -4.49 16 28 C 0.05 0.50 10.01 59.85 0.60 1.10 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 33 H 0.16 0.93 7.42 -52.49 -0.39 0.54 16 34 H 0.41 3.75 7.68 -40.82 -0.31 3.44 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.13 2.69 5.68 -52.48 -0.30 2.39 16 37 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.12 2.52 8.06 -52.49 -0.42 2.09 16 39 H 0.15 2.69 5.44 -52.49 -0.29 2.40 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.74 6.39 -51.93 -0.33 0.41 16 42 H 0.12 1.22 5.95 -51.93 -0.31 0.91 16 LS Contribution 364.52 15.07 5.49 5.49 Total: -1.00 -33.77 364.52 -6.28 -40.05 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -4.29 Total: 7.14 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -2.20 Total: -7.60 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.33 Total: -36.95 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.59 Total: -23.24 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.77 -6.28 -40.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645801401.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.475 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds