Wall clock time and date at job start Wed Apr 1 2020 02:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34818 * 117.00573 * 2 1 4 4 O 1.21537 * 119.99549 * 0.02562 * 3 2 1 5 5 C 1.47116 * 120.00228 * 179.97438 * 3 2 1 6 6 C 1.38016 * 125.90880 * 179.97438 * 5 3 2 7 7 C 1.39402 * 107.45376 * 179.97438 * 6 5 3 8 8 C 1.37978 * 107.47943 * 0.02562 * 7 6 5 9 9 C 1.47282 * 125.88902 * 179.97438 * 8 7 6 10 10 O 1.21631 * 119.99719 * 184.75735 * 9 8 7 11 11 N 1.34771 * 120.00202 * 4.75883 * 9 8 7 12 12 C 1.39870 * 119.99797 * 171.80567 * 11 9 8 13 13 C 1.38959 * 120.00082 * 206.36531 * 12 11 9 14 14 C 1.37990 * 119.99140 * 180.02562 * 13 12 11 15 15 C 1.38917 * 120.00779 * 359.97438 * 14 13 12 16 16 O 1.35771 * 119.99852 * 179.97438 * 15 14 13 17 17 C 1.34811 * 116.99729 * 351.48292 * 16 15 14 18 18 H 1.07995 * 120.00242 * 5.36685 * 17 16 15 19 19 C 1.38640 * 119.99579 * 185.37337 * 17 16 15 20 20 N 1.31569 * 120.00179 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99480 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47068 * 90.00098 * 21 19 17 23 23 H 1.48501 * 109.46870 * 209.99413 * 21 19 17 24 24 H 1.48491 * 109.47447 * 329.99482 * 21 19 17 25 25 C 1.38925 * 120.00627 * 0.25632 * 15 14 13 26 26 C 1.37991 * 120.00364 * 359.48848 * 25 15 14 27 27 N 1.36708 * 108.21549 * 0.26259 * 8 7 6 28 28 C 1.46500 * 125.66327 * 179.71806 * 27 8 7 29 29 H 1.09001 * 109.47699 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47396 * 299.99893 * 1 2 3 31 31 H 1.09003 * 109.47027 * 60.00327 * 1 2 3 32 32 H 1.08003 * 126.27361 * 359.97438 * 6 5 3 33 33 H 1.08002 * 126.26323 * 180.02562 * 7 6 5 34 34 H 0.96996 * 120.00234 * 351.80232 * 11 9 8 35 35 H 1.07994 * 120.00446 * 0.02562 * 13 12 11 36 36 H 1.08003 * 119.99408 * 179.97438 * 14 13 12 37 37 H 0.96999 * 119.99825 * 179.97438 * 20 19 17 38 38 H 1.07999 * 119.99774 * 179.74663 * 25 15 14 39 39 H 1.07998 * 119.99897 * 180.23588 * 26 25 15 40 40 H 1.09000 * 109.47576 * 94.22326 * 28 27 8 41 41 H 1.09005 * 109.47200 * 214.22358 * 28 27 8 42 42 H 1.08999 * 109.47481 * 334.22313 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0641 1.2012 0.0000 4 8 1.4022 2.2205 0.0005 5 6 3.5333 1.2781 0.0006 6 6 4.2832 2.4367 0.0001 7 6 5.6268 2.0652 0.0015 8 6 5.6754 0.6862 0.0022 9 6 6.8984 -0.1345 0.0032 10 8 6.8183 -1.3451 -0.0836 11 7 8.1060 0.4557 0.1003 12 6 9.2538 -0.3246 0.2738 13 6 10.3705 0.2124 0.9027 14 6 11.5030 -0.5574 1.0733 15 6 11.5266 -1.8692 0.6168 16 8 12.6411 -2.6263 0.7843 17 6 13.7447 -1.9988 1.2378 18 1 13.6932 -0.9611 1.5325 19 6 14.9458 -2.6856 1.3257 20 7 15.0084 -3.9499 0.9671 21 14 16.4751 -1.8159 1.9535 22 1 16.5635 -1.9722 3.4276 23 1 17.6787 -2.4117 1.3196 24 1 16.3991 -0.3727 1.6123 25 6 10.4119 -2.4046 -0.0163 26 6 9.2774 -1.6369 -0.1824 27 7 4.3928 0.2134 -0.0047 28 6 4.0031 -1.1988 -0.0123 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.8994 3.4463 -0.0011 33 1 6.4746 2.7342 0.0020 34 1 8.1793 1.4216 0.0498 35 1 10.3521 1.2321 1.2580 36 1 12.3711 -0.1399 1.5617 37 1 15.8488 -4.4304 1.0283 38 1 10.4318 -3.4232 -0.3748 39 1 8.4096 -2.0544 -0.6711 40 1 3.8296 -1.5334 1.0105 41 1 3.0895 -1.3206 -0.5943 42 1 4.8002 -1.7934 -0.4587 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645801401.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:24 Heat of formation + Delta-G solvation = -76.130869 kcal Electronic energy + Delta-G solvation = -28259.720966 eV Core-core repulsion = 23978.644104 eV Total energy + Delta-G solvation = -4281.076862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.86015 -41.50301 -40.92720 -40.11962 -38.08558 -37.64866 -35.68790 -34.21463 -33.83840 -31.84298 -31.61252 -29.63928 -28.44916 -27.66131 -27.30586 -25.30952 -23.96664 -23.21774 -22.67616 -21.34555 -20.87565 -19.87303 -19.22189 -18.92291 -18.67816 -18.01391 -17.69671 -17.46742 -16.75667 -16.40233 -16.31103 -16.04666 -15.72094 -15.41729 -15.21232 -15.05523 -14.73909 -14.51430 -14.38129 -14.29196 -14.15256 -13.90325 -13.59164 -13.35741 -13.31662 -13.21086 -13.18567 -12.90663 -12.69890 -12.48312 -12.10412 -11.97045 -11.91151 -11.32093 -11.24575 -10.78556 -10.58664 -9.96487 -9.82194 -9.63289 -8.56842 -8.42849 -6.10339 -0.32752 0.51173 0.57053 0.96568 1.22400 1.38803 1.47820 1.56399 1.59749 1.90627 2.12138 2.19040 2.21484 2.85813 3.17693 3.42633 3.53613 3.58405 3.81677 4.05668 4.09486 4.18682 4.25312 4.30563 4.32130 4.39849 4.53175 4.58574 4.64690 4.70165 4.78424 4.87981 4.96246 5.06480 5.13576 5.26223 5.29515 5.35775 5.48825 5.56057 5.70045 5.71569 5.75619 6.04982 6.18079 6.43655 6.51844 7.00641 7.03447 7.82562 8.80056 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.035595 B = 0.001806 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.440445 B =15503.691744 C =16136.238595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.540 3.460 4 O -0.518 6.518 5 C -0.031 4.031 6 C -0.109 4.109 7 C -0.138 4.138 8 C -0.015 4.015 9 C 0.581 3.419 10 O -0.555 6.555 11 N -0.625 5.625 12 C 0.064 3.936 13 C -0.078 4.078 14 C -0.218 4.218 15 C 0.106 3.894 16 O -0.233 6.233 17 C -0.411 4.411 18 H 0.107 0.893 19 C -0.026 4.026 20 N -0.923 5.923 21 Si 1.020 2.980 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.249 1.249 25 C -0.190 4.190 26 C -0.087 4.087 27 N -0.384 5.384 28 C 0.055 3.945 29 H 0.134 0.866 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.176 0.824 33 H 0.193 0.807 34 H 0.430 0.570 35 H 0.164 0.836 36 H 0.133 0.867 37 H 0.271 0.729 38 H 0.110 0.890 39 H 0.152 0.848 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.295 14.549 -1.698 29.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.278 6.278 3 C 0.386 3.614 4 O -0.407 6.407 5 C -0.146 4.146 6 C -0.135 4.135 7 C -0.164 4.164 8 C -0.135 4.135 9 C 0.370 3.630 10 O -0.435 6.435 11 N -0.270 5.270 12 C -0.029 4.029 13 C -0.098 4.098 14 C -0.238 4.238 15 C 0.055 3.945 16 O -0.140 6.140 17 C -0.487 4.487 18 H 0.125 0.875 19 C -0.223 4.223 20 N -0.561 5.561 21 Si 0.839 3.161 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.172 1.172 25 C -0.210 4.210 26 C -0.107 4.107 27 N -0.057 5.057 28 C -0.085 4.085 29 H 0.152 0.848 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.193 0.807 33 H 0.210 0.790 34 H 0.269 0.731 35 H 0.181 0.819 36 H 0.150 0.850 37 H 0.080 0.920 38 H 0.128 0.872 39 H 0.169 0.831 40 H 0.106 0.894 41 H 0.127 0.873 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -25.601 13.207 -1.798 28.863 hybrid contribution 0.586 0.031 0.211 0.623 sum -25.015 13.238 -1.588 28.346 Atomic orbital electron populations 1.23636 0.73692 1.06055 1.02979 1.86604 1.25834 1.31417 1.83955 1.19943 0.86879 0.82054 0.72566 1.90878 1.65761 1.36579 1.47497 1.19768 0.86967 0.88545 1.19321 1.21552 0.92063 0.97462 1.02410 1.21771 0.98434 0.91332 1.04828 1.20140 0.84093 0.94137 1.15085 1.17342 0.82814 0.86447 0.76393 1.90685 1.86649 1.15394 1.50783 1.42570 1.03015 1.11118 1.70343 1.17363 0.87861 0.92287 1.05425 1.20805 0.90746 1.00920 0.97288 1.21125 1.00781 0.94115 1.07776 1.19945 0.88258 0.91637 0.94665 1.83955 1.17481 1.36700 1.75838 1.21872 0.85538 0.97693 1.43582 0.87530 1.26623 1.01864 0.96650 0.97186 1.70205 1.28107 1.10681 1.47130 0.84565 0.74702 0.78468 0.78353 1.18959 1.20001 1.17202 1.20346 0.92985 1.01274 1.06388 1.21357 0.97057 0.93546 0.98706 1.44017 1.04290 1.07724 1.49640 1.22655 1.03996 0.76652 1.05181 0.84836 0.91538 0.91460 0.80706 0.78981 0.73052 0.81877 0.84974 0.91977 0.87156 0.83069 0.89448 0.87291 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.57 113.37 1.20 1.46 16 2 O -0.36 -5.57 8.04 -57.30 -0.46 -6.03 16 3 C 0.54 10.51 7.94 70.15 0.56 11.07 16 4 O -0.52 -12.04 16.67 19.71 0.33 -11.71 16 5 C -0.03 -0.60 6.87 40.64 0.28 -0.32 16 6 C -0.11 -1.69 10.60 22.50 0.24 -1.46 16 7 C -0.14 -1.90 10.32 22.49 0.23 -1.66 16 8 C -0.02 -0.30 6.87 40.70 0.28 -0.02 16 9 C 0.58 14.15 7.69 86.62 0.67 14.82 16 10 O -0.55 -17.18 11.37 -4.13 -0.05 -17.22 16 11 N -0.63 -13.61 5.34 -306.45 -1.64 -15.25 16 12 C 0.06 1.98 6.46 38.20 0.25 2.23 16 13 C -0.08 -2.37 9.94 22.38 0.22 -2.15 16 14 C -0.22 -8.86 9.15 22.37 0.20 -8.65 16 15 C 0.11 5.19 6.64 22.60 0.15 5.34 16 16 O -0.23 -13.92 9.75 -22.78 -0.22 -14.15 16 17 C -0.41 -23.39 9.48 67.92 0.64 -22.75 16 18 H 0.11 5.42 5.23 -2.91 -0.02 5.41 16 19 C -0.03 -1.47 5.49 84.83 0.47 -1.00 16 20 N -0.92 -56.58 13.67 21.61 0.30 -56.28 16 21 Si 1.02 41.99 29.55 68.60 2.03 44.02 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 23 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 25 C -0.19 -8.44 9.98 22.38 0.22 -8.22 16 26 C -0.09 -3.24 8.82 22.38 0.20 -3.04 16 27 N -0.38 -7.59 3.17 -520.55 -1.65 -9.24 16 28 C 0.05 0.96 10.01 127.77 1.28 2.24 16 29 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.19 1.11 7.42 -2.91 -0.02 1.09 16 34 H 0.43 5.53 7.68 -92.71 -0.71 4.82 16 35 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 36 H 0.13 5.29 5.68 -2.91 -0.02 5.28 16 37 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 39 H 0.15 5.52 5.44 -2.91 -0.02 5.50 16 40 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.11 1.55 6.39 -2.38 -0.02 1.53 16 42 H 0.10 2.09 5.95 -2.39 -0.01 2.07 16 Total: -1.00 -79.19 364.52 6.11 -73.08 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.39 Total: 24.88 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 7.08 Total: -12.10 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -2.99 Total: -80.77 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -0.40 Total: -49.11 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -79.19 6.11 -73.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645801401.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.050 kcal (2) G-P(sol) polarization free energy of solvation -79.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds