Wall clock time and date at job start Wed Apr 1 2020 02:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46901 * 110.99746 * 2 1 4 4 C 1.53005 * 109.47258 * 66.04708 * 3 2 1 5 5 N 1.46497 * 109.47145 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00035 * 179.97438 * 5 4 3 7 7 O 1.21289 * 119.99656 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00445 * 180.02562 * 6 5 4 9 9 S 1.80997 * 109.47365 * 180.02562 * 8 6 5 10 10 C 1.76199 * 100.00108 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99727 * 359.97438 * 10 9 8 12 12 C 1.38795 * 120.00259 * 179.97438 * 10 9 8 13 13 N 1.31629 * 119.99934 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00164 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47073 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47340 * 119.99998 * 14 12 10 17 17 H 1.48507 * 109.47148 * 240.00282 * 14 12 10 18 18 C 1.46902 * 111.00304 * 236.05034 * 2 1 3 19 19 C 1.50706 * 109.46577 * 293.95012 * 18 2 1 20 20 C 1.38206 * 119.97150 * 269.71843 * 19 18 2 21 21 C 1.38483 * 120.02108 * 179.76676 * 20 19 18 22 22 F 1.35089 * 120.01235 * 180.27566 * 21 20 19 23 23 C 1.38423 * 119.97324 * 0.54052 * 21 20 19 24 24 C 1.38426 * 119.94767 * 359.71729 * 23 21 20 25 25 F 1.35105 * 120.00906 * 179.97438 * 24 23 21 26 26 C 1.38209 * 119.97088 * 90.00006 * 19 18 2 27 27 H 1.09003 * 109.47237 * 183.95504 * 1 2 3 28 28 H 1.08998 * 109.47394 * 303.94903 * 1 2 3 29 29 H 1.09003 * 109.47554 * 63.95496 * 1 2 3 30 30 H 1.09000 * 109.47307 * 186.04517 * 3 2 1 31 31 H 1.08997 * 109.47179 * 306.04929 * 3 2 1 32 32 H 1.09000 * 109.46805 * 300.00116 * 4 3 2 33 33 H 1.08997 * 109.46846 * 60.00016 * 4 3 2 34 34 H 0.97001 * 120.00255 * 0.02562 * 5 4 3 35 35 H 1.09003 * 109.46629 * 300.00600 * 8 6 5 36 36 H 1.09000 * 109.46859 * 59.99931 * 8 6 5 37 37 H 0.96994 * 120.00376 * 179.97438 * 13 12 10 38 38 H 1.09000 * 109.46894 * 173.95246 * 18 2 1 39 39 H 1.09000 * 109.47263 * 53.94812 * 18 2 1 40 40 H 1.07993 * 119.99015 * 0.02562 * 20 19 18 41 41 H 1.08000 * 120.02632 * 179.70031 * 23 21 20 42 42 H 1.07992 * 119.99113 * 359.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0575 1.3183 5 7 2.1568 3.4250 1.3185 6 6 1.9555 4.2241 2.3850 7 8 1.3397 3.8108 3.3448 8 6 2.4955 5.6310 2.3851 9 16 2.0650 6.4424 3.9447 10 6 2.7971 8.0231 3.6795 11 1 3.3161 8.2295 2.7552 12 6 2.7066 9.0029 4.6583 13 7 2.0735 8.7515 5.7846 14 14 3.4820 10.6788 4.3768 15 1 4.1290 10.7067 3.0405 16 1 2.4322 11.7271 4.4411 17 1 4.5020 10.9348 5.4254 18 6 1.9954 -0.7659 -1.1376 19 6 1.6369 -2.2204 -0.9728 20 6 2.4969 -3.0721 -0.3057 21 6 2.1663 -4.4078 -0.1495 22 9 3.0044 -5.2390 0.5075 23 6 0.9793 -4.8921 -0.6715 24 6 0.1213 -4.0391 -1.3442 25 9 -1.0374 -4.5105 -1.8547 26 6 0.4512 -2.7026 -1.4941 27 1 -0.3634 -1.0252 0.0709 28 1 -0.3634 0.5739 0.8525 29 1 -0.3634 0.4512 -0.9233 30 1 3.0796 1.3445 -0.1082 31 1 1.5609 1.9274 -0.8308 32 1 0.5470 2.0845 1.4265 33 1 2.0657 1.5016 2.1491 34 1 2.6489 3.7556 0.5508 35 1 3.5799 5.6039 2.2771 36 1 2.0614 6.1868 1.5540 37 1 2.0105 9.4360 6.4689 38 1 3.0797 -0.6609 -1.1756 39 1 1.5611 -0.3872 -2.0628 40 1 3.4250 -2.6951 0.0976 41 1 0.7228 -5.9346 -0.5544 42 1 -0.2180 -2.0370 -2.0188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663146157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:57 Heat of formation + Delta-G solvation = -96.757799 kcal Electronic energy + Delta-G solvation = -25632.975865 eV Core-core repulsion = 21375.360988 eV Total energy + Delta-G solvation = -4257.614877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.49149 -49.45162 -39.99340 -39.19725 -37.67297 -34.59605 -32.43974 -32.33465 -30.90514 -30.15295 -28.12253 -27.90725 -25.52446 -24.74937 -23.34935 -22.20214 -21.40679 -20.38092 -18.27899 -17.83880 -17.72141 -16.95044 -16.71916 -16.40551 -16.27731 -16.21326 -15.98515 -15.76775 -15.26378 -15.08138 -14.85641 -14.80966 -14.63526 -13.96564 -13.84975 -13.41891 -13.33955 -13.12871 -12.58535 -12.51009 -12.39266 -12.29898 -12.26257 -12.11277 -11.88400 -11.61798 -11.31949 -11.07771 -11.02856 -10.76692 -9.81724 -9.56998 -9.42699 -9.26696 -9.08727 -8.90366 -8.85748 -8.23946 -6.50883 -6.22604 -3.93196 0.39242 0.44763 2.67839 2.98669 3.08685 3.20853 3.24861 3.29471 3.32064 3.51789 3.79948 3.90754 3.95912 4.19418 4.25959 4.38148 4.50203 4.59161 4.71319 4.72440 4.85814 5.07299 5.12295 5.12706 5.17169 5.18383 5.21913 5.27314 5.43170 5.47850 5.54317 5.64147 5.72419 5.76156 5.87818 5.89650 6.12258 6.22054 6.43685 6.47137 6.63125 7.58952 7.67086 8.34516 8.59599 9.22830 10.84901 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.029686 B = 0.001473 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.988267 B =19008.486421 C =19239.950847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.532 5.532 3 C 0.046 3.954 4 C 0.124 3.876 5 N -0.740 5.740 6 C 0.532 3.468 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.061 6.061 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.092 3.908 19 C -0.019 4.019 20 C -0.141 4.141 21 C 0.132 3.868 22 F -0.130 7.130 23 C -0.193 4.193 24 C 0.130 3.870 25 F -0.131 7.131 26 C -0.158 4.158 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.030 0.970 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.397 0.603 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.093 0.907 39 H 0.053 0.947 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 -25.756 -19.896 32.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.257 5.257 3 C -0.082 4.082 4 C -0.001 4.001 5 N -0.395 5.395 6 C 0.318 3.682 7 O -0.389 6.389 8 C -0.304 4.304 9 S 0.166 5.834 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.035 4.035 19 C -0.019 4.019 20 C -0.160 4.160 21 C 0.112 3.888 22 F -0.108 7.108 23 C -0.213 4.213 24 C 0.111 3.889 25 F -0.110 7.110 26 C -0.178 4.178 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.049 0.951 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.231 0.769 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.072 0.928 40 H 0.164 0.836 41 H 0.166 0.834 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.272 -26.654 -17.667 32.003 hybrid contribution 1.030 1.739 -2.340 3.092 sum -0.241 -24.915 -20.008 31.955 Atomic orbital electron populations 1.22635 0.86674 1.02917 1.01427 1.61839 1.08692 1.13157 1.41963 1.22282 1.00881 0.87940 0.97130 1.21190 0.99520 0.82170 0.97207 1.45911 1.59593 1.13650 1.20371 1.20295 0.79233 0.86837 0.81798 1.90714 1.39434 1.75142 1.33658 1.23528 1.03960 0.94983 1.07903 1.85421 1.73375 1.10973 1.13623 1.22909 1.41064 0.98415 1.05982 0.90866 1.24995 0.95159 0.99005 0.94455 1.70025 1.39744 1.34355 1.06128 0.86112 0.78868 0.82129 0.78349 1.19634 1.20570 1.20559 1.21100 1.01389 0.88540 0.92518 1.19342 0.92504 0.95438 0.94660 1.21114 1.02281 0.91256 1.01392 1.17272 0.88504 0.88116 0.94895 1.91550 1.69842 1.71204 1.78230 1.21056 0.94896 1.01954 1.03425 1.17217 0.82927 0.92088 0.96704 1.91549 1.45809 1.88890 1.84712 1.21133 0.98613 0.94031 1.04009 0.90890 0.90239 0.95125 0.89784 0.93798 0.91551 0.90635 0.76946 0.89183 0.89240 0.92221 0.88820 0.92840 0.83635 0.83448 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 8.94 60.06 0.54 0.62 16 2 N -0.53 -3.80 4.75 -244.37 -1.16 -4.96 16 3 C 0.05 0.33 5.07 -3.82 -0.02 0.31 16 4 C 0.12 1.36 5.61 -4.04 -0.02 1.33 16 5 N -0.74 -9.27 5.56 -60.29 -0.33 -9.61 16 6 C 0.53 9.72 7.85 -10.99 -0.09 9.64 16 7 O -0.52 -11.66 15.86 5.55 0.09 -11.57 16 8 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 10 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 11 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 14 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 C 0.09 0.48 5.12 -4.97 -0.03 0.46 16 19 C -0.02 -0.11 4.88 -104.64 -0.51 -0.62 16 20 C -0.14 -0.92 9.68 -39.50 -0.38 -1.30 16 21 C 0.13 0.96 7.30 -39.42 -0.29 0.67 16 22 F -0.13 -1.08 17.27 2.25 0.04 -1.04 16 23 C -0.19 -1.31 10.01 -39.44 -0.39 -1.71 16 24 C 0.13 0.91 7.30 -39.43 -0.29 0.62 16 25 F -0.13 -1.03 17.27 2.25 0.04 -0.99 16 26 C -0.16 -0.95 7.94 -39.51 -0.31 -1.27 16 27 H 0.07 0.50 6.17 -51.93 -0.32 0.18 16 28 H 0.08 0.65 6.30 -51.93 -0.33 0.32 16 29 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.08 0.51 7.93 -51.93 -0.41 0.10 16 31 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 32 H 0.07 0.80 6.47 -51.93 -0.34 0.46 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.40 3.67 8.47 -40.82 -0.35 3.32 16 35 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 36 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.09 0.39 7.87 -51.93 -0.41 -0.02 16 39 H 0.05 0.23 8.06 -51.93 -0.42 -0.19 16 40 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.14 0.66 8.03 -52.49 -0.42 0.24 16 LS Contribution 378.44 15.07 5.70 5.70 Total: -1.00 -34.56 378.44 -9.00 -43.56 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.49 Total: -1.22 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -1.37 Total: -6.94 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: -0.76 Total: -39.91 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.08 Total: -2.03 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.56 -9.00 -43.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663146157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.197 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds