Wall clock time and date at job start Wed Apr 1 2020 02:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46901 * 110.99746 * 2 1 4 4 C 1.53005 * 109.47258 * 66.04708 * 3 2 1 5 5 N 1.46497 * 109.47145 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00035 * 179.97438 * 5 4 3 7 7 O 1.21289 * 119.99656 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00445 * 180.02562 * 6 5 4 9 9 S 1.80997 * 109.47365 * 180.02562 * 8 6 5 10 10 C 1.76199 * 100.00108 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99727 * 359.97438 * 10 9 8 12 12 C 1.38795 * 120.00259 * 179.97438 * 10 9 8 13 13 N 1.31629 * 119.99934 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00164 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47073 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47340 * 119.99998 * 14 12 10 17 17 H 1.48507 * 109.47148 * 240.00282 * 14 12 10 18 18 C 1.46902 * 111.00304 * 236.05034 * 2 1 3 19 19 C 1.50706 * 109.46577 * 293.95012 * 18 2 1 20 20 C 1.38206 * 119.97150 * 269.71843 * 19 18 2 21 21 C 1.38483 * 120.02108 * 179.76676 * 20 19 18 22 22 F 1.35089 * 120.01235 * 180.27566 * 21 20 19 23 23 C 1.38423 * 119.97324 * 0.54052 * 21 20 19 24 24 C 1.38426 * 119.94767 * 359.71729 * 23 21 20 25 25 F 1.35105 * 120.00906 * 179.97438 * 24 23 21 26 26 C 1.38209 * 119.97088 * 90.00006 * 19 18 2 27 27 H 1.09003 * 109.47237 * 183.95504 * 1 2 3 28 28 H 1.08998 * 109.47394 * 303.94903 * 1 2 3 29 29 H 1.09003 * 109.47554 * 63.95496 * 1 2 3 30 30 H 1.09000 * 109.47307 * 186.04517 * 3 2 1 31 31 H 1.08997 * 109.47179 * 306.04929 * 3 2 1 32 32 H 1.09000 * 109.46805 * 300.00116 * 4 3 2 33 33 H 1.08997 * 109.46846 * 60.00016 * 4 3 2 34 34 H 0.97001 * 120.00255 * 0.02562 * 5 4 3 35 35 H 1.09003 * 109.46629 * 300.00600 * 8 6 5 36 36 H 1.09000 * 109.46859 * 59.99931 * 8 6 5 37 37 H 0.96994 * 120.00376 * 179.97438 * 13 12 10 38 38 H 1.09000 * 109.46894 * 173.95246 * 18 2 1 39 39 H 1.09000 * 109.47263 * 53.94812 * 18 2 1 40 40 H 1.07993 * 119.99015 * 0.02562 * 20 19 18 41 41 H 1.08000 * 120.02632 * 179.70031 * 23 21 20 42 42 H 1.07992 * 119.99113 * 359.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0575 1.3183 5 7 2.1568 3.4250 1.3185 6 6 1.9555 4.2241 2.3850 7 8 1.3397 3.8108 3.3448 8 6 2.4955 5.6310 2.3851 9 16 2.0650 6.4424 3.9447 10 6 2.7971 8.0231 3.6795 11 1 3.3161 8.2295 2.7552 12 6 2.7066 9.0029 4.6583 13 7 2.0735 8.7515 5.7846 14 14 3.4820 10.6788 4.3768 15 1 4.1290 10.7067 3.0405 16 1 2.4322 11.7271 4.4411 17 1 4.5020 10.9348 5.4254 18 6 1.9954 -0.7659 -1.1376 19 6 1.6369 -2.2204 -0.9728 20 6 2.4969 -3.0721 -0.3057 21 6 2.1663 -4.4078 -0.1495 22 9 3.0044 -5.2390 0.5075 23 6 0.9793 -4.8921 -0.6715 24 6 0.1213 -4.0391 -1.3442 25 9 -1.0374 -4.5105 -1.8547 26 6 0.4512 -2.7026 -1.4941 27 1 -0.3634 -1.0252 0.0709 28 1 -0.3634 0.5739 0.8525 29 1 -0.3634 0.4512 -0.9233 30 1 3.0796 1.3445 -0.1082 31 1 1.5609 1.9274 -0.8308 32 1 0.5470 2.0845 1.4265 33 1 2.0657 1.5016 2.1491 34 1 2.6489 3.7556 0.5508 35 1 3.5799 5.6039 2.2771 36 1 2.0614 6.1868 1.5540 37 1 2.0105 9.4360 6.4689 38 1 3.0797 -0.6609 -1.1756 39 1 1.5611 -0.3872 -2.0628 40 1 3.4250 -2.6951 0.0976 41 1 0.7228 -5.9346 -0.5544 42 1 -0.2180 -2.0370 -2.0188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663146157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:57 Heat of formation + Delta-G solvation = -120.410896 kcal Electronic energy + Delta-G solvation = -25634.001541 eV Core-core repulsion = 21375.360988 eV Total energy + Delta-G solvation = -4258.640552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.111 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.05251 -50.02928 -40.71256 -40.32454 -38.33097 -35.72064 -34.57380 -32.98403 -31.48139 -31.32184 -29.13930 -28.40717 -27.64327 -25.47861 -23.86076 -22.83069 -22.07135 -21.65841 -19.81707 -18.80842 -18.24710 -17.84040 -17.44542 -17.36927 -17.08233 -16.92452 -16.87015 -16.73692 -16.35111 -16.28602 -16.06730 -15.67677 -15.38152 -15.22191 -14.86587 -14.63684 -14.33592 -13.94521 -13.85670 -13.53862 -13.14742 -13.01552 -12.93647 -12.91119 -12.87052 -12.76111 -12.57839 -12.48730 -12.20807 -12.07965 -11.69568 -11.14915 -10.97999 -10.25278 -10.09684 -10.04748 -9.77925 -9.34681 -8.65568 -8.33718 -6.11726 -0.10114 -0.05747 1.28149 1.42537 1.48337 1.59124 1.63220 2.11088 2.28193 2.36269 2.79443 3.00663 3.14305 3.32307 3.36377 3.48529 3.79251 3.84495 3.92938 4.04009 4.10021 4.12343 4.29460 4.33373 4.36688 4.52444 4.53463 4.60396 4.63725 4.77072 4.80521 4.90226 4.96343 4.97711 5.00213 5.10547 5.28566 5.42402 5.43604 5.72677 5.97589 5.98637 6.21255 6.53119 7.07817 7.27327 8.75778 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.029686 B = 0.001473 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.988267 B =19008.486421 C =19239.950847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.546 5.546 3 C 0.058 3.942 4 C 0.124 3.876 5 N -0.710 5.710 6 C 0.533 3.467 7 O -0.568 6.568 8 C -0.128 4.128 9 S -0.156 6.156 10 C -0.545 4.545 11 H 0.084 0.916 12 C 0.012 3.988 13 N -0.912 5.912 14 Si 1.000 3.000 15 H -0.255 1.255 16 H -0.275 1.275 17 H -0.275 1.275 18 C 0.094 3.906 19 C -0.020 4.020 20 C -0.141 4.141 21 C 0.115 3.885 22 F -0.140 7.140 23 C -0.196 4.196 24 C 0.116 3.884 25 F -0.139 7.139 26 C -0.152 4.152 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.418 0.582 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.271 0.729 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.028 -25.104 -22.765 33.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.271 5.271 3 C -0.070 4.070 4 C 0.000 4.000 5 N -0.365 5.365 6 C 0.319 3.681 7 O -0.446 6.446 8 C -0.280 4.280 9 S 0.071 5.929 10 C -0.693 4.693 11 H 0.102 0.898 12 C -0.192 4.192 13 N -0.549 5.549 14 Si 0.821 3.179 15 H -0.179 1.179 16 H -0.200 1.200 17 H -0.200 1.200 18 C -0.032 4.032 19 C -0.021 4.021 20 C -0.160 4.160 21 C 0.096 3.904 22 F -0.118 7.118 23 C -0.216 4.216 24 C 0.097 3.903 25 F -0.117 7.117 26 C -0.171 4.171 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.255 0.745 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.127 0.873 39 H 0.088 0.912 40 H 0.173 0.827 41 H 0.173 0.827 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.099 -26.031 -20.607 33.201 hybrid contribution 0.592 1.399 -1.523 2.151 sum 0.691 -24.632 -22.130 33.121 Atomic orbital electron populations 1.22592 0.86931 1.02723 1.01322 1.61763 1.08643 1.13248 1.43439 1.22159 1.02109 0.87864 0.94888 1.21268 0.98613 0.80967 0.99157 1.45590 1.58123 1.13605 1.19201 1.20072 0.78854 0.86739 0.82441 1.90705 1.42010 1.75929 1.35972 1.23366 1.05412 0.95441 1.03743 1.85627 1.74493 1.12725 1.20018 1.23247 1.40972 0.98534 1.06503 0.89754 1.26137 0.95523 1.03618 0.93967 1.70191 1.41374 1.35960 1.07335 0.84893 0.77866 0.76166 0.78940 1.17900 1.20013 1.20024 1.21164 1.02383 0.87386 0.92308 1.19461 0.92269 0.95960 0.94386 1.21298 1.02753 0.90954 1.01013 1.17428 0.88780 0.88530 0.95686 1.91523 1.70151 1.71566 1.78571 1.21177 0.94769 1.02516 1.03138 1.17356 0.82898 0.92672 0.97367 1.91529 1.46223 1.89056 1.84909 1.21324 0.98715 0.93743 1.03365 0.90935 0.91978 0.93811 0.87886 0.92084 0.92753 0.92531 0.74450 0.86998 0.87018 0.92030 0.87273 0.91181 0.82700 0.82712 0.82665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 8.94 127.69 1.14 1.29 16 2 N -0.55 -6.36 4.75 -927.04 -4.41 -10.77 16 3 C 0.06 0.64 5.07 86.30 0.44 1.08 16 4 C 0.12 2.53 5.61 86.38 0.48 3.01 16 5 N -0.71 -16.17 5.56 -463.05 -2.57 -18.74 16 6 C 0.53 19.02 7.85 87.66 0.69 19.71 16 7 O -0.57 -26.23 15.86 -3.06 -0.05 -26.28 16 8 C -0.13 -4.90 6.16 71.24 0.44 -4.47 16 9 S -0.16 -8.58 20.57 -56.49 -1.16 -9.75 16 10 C -0.54 -30.78 9.50 67.95 0.65 -30.13 16 11 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 12 C 0.01 0.69 5.49 84.86 0.47 1.15 16 13 N -0.91 -55.90 13.22 21.65 0.29 -55.61 16 14 Si 1.00 43.18 29.55 68.60 2.03 45.20 16 15 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 16 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 C 0.09 0.67 5.12 85.56 0.44 1.11 16 19 C -0.02 -0.20 4.88 -19.88 -0.10 -0.29 16 20 C -0.14 -1.63 9.68 22.32 0.22 -1.41 16 21 C 0.12 1.62 7.30 22.37 0.16 1.78 16 22 F -0.14 -2.30 17.27 44.97 0.78 -1.53 16 23 C -0.20 -2.59 10.01 22.36 0.22 -2.36 16 24 C 0.12 1.53 7.30 22.37 0.16 1.69 16 25 F -0.14 -2.09 17.27 44.97 0.78 -1.32 16 26 C -0.15 -1.56 7.94 22.32 0.18 -1.38 16 27 H 0.07 0.89 6.17 -2.39 -0.01 0.87 16 28 H 0.06 0.98 6.30 -2.39 -0.02 0.96 16 29 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.10 0.80 7.93 -2.39 -0.02 0.78 16 31 H 0.06 0.51 8.12 -2.39 -0.02 0.50 16 32 H 0.05 1.28 6.47 -2.39 -0.02 1.26 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.42 6.12 8.47 -92.71 -0.79 5.34 16 35 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 36 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 37 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.11 0.48 7.87 -2.39 -0.02 0.46 16 39 H 0.07 0.31 8.06 -2.39 -0.02 0.29 16 40 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 41 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 42 H 0.16 1.08 8.03 -2.91 -0.02 1.06 16 Total: -1.00 -77.90 378.44 1.53 -76.36 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.27 Total: 11.64 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 5.59 Total: -9.22 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -6.69 Total: -85.12 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.05 Total: -26.28 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 1.55 Total: -2.84 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.75 kcal Total: -77.90 1.53 -76.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663146157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.050 kcal (2) G-P(sol) polarization free energy of solvation -77.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds