Wall clock time and date at job start Wed Apr 1 2020 03:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00139 * 2 1 4 4 H 1.48498 * 109.47220 * 269.99661 * 3 2 1 5 5 H 1.48499 * 109.47313 * 29.99889 * 3 2 1 6 6 H 1.48501 * 109.46960 * 150.00030 * 3 2 1 7 7 C 1.38798 * 119.99606 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00499 * 0.02562 * 7 2 1 9 9 S 1.76202 * 119.99776 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00267 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47579 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99626 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00066 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00059 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47425 * 180.02562 * 14 13 11 16 16 C 1.53781 * 113.61609 * 175.00005 * 15 14 13 17 17 C 1.53781 * 87.08070 * 139.98229 * 16 15 14 18 18 N 1.46900 * 113.61428 * 219.93557 * 17 16 15 19 19 C 1.46895 * 110.99924 * 203.46824 * 18 17 16 20 20 C 1.50700 * 109.47106 * 180.02562 * 19 18 17 21 21 O 1.21230 * 119.99945 * 359.97438 * 20 19 18 22 22 N 1.34774 * 120.00188 * 180.02562 * 20 19 18 23 23 C 1.34780 * 120.00679 * 180.02562 * 22 20 19 24 24 N 1.34769 * 120.00333 * 179.97438 * 23 22 20 25 25 O 1.21542 * 119.99237 * 359.97438 * 23 22 20 26 26 C 1.53786 * 87.17350 * 334.52830 * 17 16 15 27 27 H 0.97002 * 119.99752 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47339 * 59.99641 * 10 9 7 29 29 H 1.09006 * 109.47054 * 300.00417 * 10 9 7 30 30 H 0.96996 * 120.00586 * 0.02562 * 13 11 10 31 31 H 1.08997 * 109.47114 * 60.00231 * 14 13 11 32 32 H 1.09006 * 109.47306 * 300.00712 * 14 13 11 33 33 H 1.08996 * 112.84723 * 43.80825 * 15 14 13 34 34 H 1.08999 * 113.61181 * 25.43284 * 16 15 14 35 35 H 1.08998 * 113.61680 * 254.52836 * 16 15 14 36 36 H 1.09002 * 113.61445 * 89.11830 * 17 16 15 37 37 H 1.00902 * 110.99925 * 79.51829 * 18 17 16 38 38 H 1.08994 * 109.47448 * 300.00310 * 19 18 17 39 39 H 1.09001 * 109.47145 * 60.00387 * 19 18 17 40 40 H 0.97006 * 119.99894 * 359.97438 * 22 20 19 41 41 H 0.96993 * 120.00100 * 359.97438 * 24 23 22 42 42 H 0.97007 * 119.99536 * 179.97438 * 24 23 22 43 43 H 1.08992 * 113.61675 * 140.02412 * 26 17 16 44 44 H 1.09000 * 113.60973 * 270.92699 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7722 -1.2021 -0.0001 10 6 4.0865 -2.9846 0.0001 11 6 5.5730 -3.2327 -0.0010 12 8 6.3439 -2.2964 -0.0015 13 7 6.0455 -4.4948 -0.0005 14 6 7.4905 -4.7360 -0.0011 15 6 7.7562 -6.2428 -0.0010 16 6 9.2454 -6.6057 -0.1243 17 6 8.9796 -7.7150 0.9071 18 7 10.0566 -7.8714 1.8938 19 6 10.0483 -9.2215 2.4726 20 6 11.1639 -9.3438 3.4783 21 8 11.8940 -8.3997 3.6915 22 7 11.3506 -10.5029 4.1401 23 6 12.3480 -10.6122 5.0400 24 7 12.5343 -11.7712 5.7021 25 8 13.0794 -9.6654 5.2543 26 6 7.8033 -6.8611 1.4092 27 1 -0.4850 0.8401 -0.0004 28 1 3.6432 -3.4319 -0.8896 29 1 3.6439 -3.4315 0.8904 30 1 5.4289 -5.2436 0.0002 31 1 7.9339 -4.2885 0.8884 32 1 7.9331 -4.2894 -0.8915 33 1 7.1155 -6.7855 -0.6959 34 1 9.9162 -5.8259 0.2362 35 1 9.5230 -6.9824 -1.1088 36 1 8.6733 -8.6613 0.4614 37 1 9.9914 -7.1685 2.6148 38 1 9.0931 -9.3991 2.9666 39 1 10.1902 -9.9571 1.6809 40 1 10.7666 -11.2584 3.9693 41 1 11.9504 -12.5266 5.5313 42 1 13.2525 -11.8499 6.3494 43 1 6.9175 -7.4436 1.6619 44 1 8.0806 -6.1510 2.1882 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691894940.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:38 Heat of formation + Delta-G solvation = -117.339335 kcal Electronic energy + Delta-G solvation = -25837.739812 eV Core-core repulsion = 21722.612720 eV Total energy + Delta-G solvation = -4115.127093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.14077 -40.91298 -40.04298 -39.26972 -36.03808 -35.80980 -34.67833 -34.55631 -34.29590 -31.41795 -28.96409 -27.87495 -27.12231 -26.51305 -23.77215 -22.51080 -21.89448 -21.60091 -20.63792 -19.84848 -19.65082 -18.59706 -17.83014 -17.46849 -17.30509 -17.10512 -16.94527 -16.75070 -16.64987 -16.06544 -15.79933 -15.63823 -15.44055 -15.21288 -14.93558 -14.77487 -14.64953 -14.32959 -13.68043 -13.54133 -13.34535 -13.30580 -13.01795 -12.91918 -12.73487 -12.60353 -12.18783 -11.91191 -11.84650 -11.50371 -11.28809 -11.26336 -11.17084 -10.94020 -10.78017 -10.74579 -10.52677 -10.09577 -9.30260 -8.99638 -8.51703 -6.22304 0.99775 1.03093 1.31179 1.47142 1.48240 1.56555 1.58325 2.23572 2.23639 2.28472 2.72897 2.86825 3.09106 3.34420 3.62677 3.65114 3.76427 3.93196 3.95887 4.03991 4.24241 4.32905 4.42638 4.44011 4.47586 4.52111 4.74611 4.88017 4.92331 4.96412 5.03699 5.16767 5.25430 5.36353 5.46886 5.55616 5.70847 5.84943 6.11333 6.11506 6.28320 6.51143 6.56770 6.93971 7.13554 7.23048 7.43602 8.60612 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.026185 B = 0.001382 C = 0.001366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.062729 B =20259.222115 C =20494.843078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.048 3.952 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.239 1.239 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.181 6.181 10 C -0.110 4.110 11 C 0.531 3.469 12 O -0.568 6.568 13 N -0.707 5.707 14 C 0.131 3.869 15 C -0.111 4.111 16 C -0.122 4.122 17 C 0.081 3.919 18 N -0.688 5.688 19 C 0.052 3.948 20 C 0.509 3.491 21 O -0.518 6.518 22 N -0.672 5.672 23 C 0.688 3.312 24 N -0.830 5.830 25 O -0.605 6.605 26 C -0.162 4.162 27 H 0.277 0.723 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.418 0.582 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.121 0.879 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.131 0.869 37 H 0.346 0.654 38 H 0.102 0.898 39 H 0.141 0.859 40 H 0.437 0.563 41 H 0.422 0.578 42 H 0.424 0.576 43 H 0.088 0.912 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.738 -35.463 5.618 40.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.163 1.163 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.045 5.955 10 C -0.261 4.261 11 C 0.316 3.684 12 O -0.447 6.447 13 N -0.361 5.361 14 C 0.007 3.993 15 C -0.130 4.130 16 C -0.161 4.161 17 C -0.028 4.028 18 N -0.320 5.320 19 C -0.080 4.080 20 C 0.297 3.703 21 O -0.389 6.389 22 N -0.342 5.342 23 C 0.386 3.614 24 N -0.401 5.401 25 O -0.482 6.482 26 C -0.201 4.201 27 H 0.086 0.914 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.255 0.745 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.139 0.861 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.149 0.851 37 H 0.165 0.835 38 H 0.120 0.880 39 H 0.159 0.841 40 H 0.277 0.723 41 H 0.254 0.746 42 H 0.258 0.742 43 H 0.106 0.894 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 22.298 -32.579 5.350 39.839 hybrid contribution -2.198 -0.918 0.820 2.520 sum 20.100 -33.497 6.170 39.549 Atomic orbital electron populations 1.70011 1.07237 1.28992 1.49183 1.25521 0.95231 1.02118 0.92885 0.85893 0.80647 0.79785 0.80211 1.18693 1.18297 1.16304 1.22459 0.90161 0.96739 1.58220 0.91788 1.84784 1.06547 1.06557 1.97593 1.23270 0.95878 0.99385 1.07546 1.20024 0.89419 0.83578 0.75357 1.90696 1.59461 1.44068 1.50461 1.45726 1.08824 1.06575 1.74988 1.21405 0.79700 0.97052 1.01111 1.22672 0.98854 0.92312 0.99155 1.23057 0.94357 0.98503 1.00207 1.23060 0.88005 0.98886 0.92884 1.60108 1.48634 1.03563 1.19651 1.22022 0.95015 0.94201 0.96777 1.21758 0.86171 0.81162 0.81225 1.90860 1.46167 1.38947 1.62876 1.43898 1.32770 1.17743 1.39783 1.16540 0.80987 0.84192 0.79653 1.42879 1.39031 1.12679 1.45544 1.91109 1.48597 1.40100 1.68353 1.23835 1.00510 0.99625 0.96101 0.91370 0.86662 0.86735 0.74494 0.93096 0.92663 0.86107 0.91188 0.89945 0.85129 0.83489 0.87989 0.84135 0.72303 0.74569 0.74181 0.89379 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.69 13.97 21.65 0.30 -55.39 16 2 C 0.05 2.82 5.50 84.86 0.47 3.28 16 3 Si 0.91 45.32 27.74 68.60 1.90 47.22 16 4 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.24 -11.94 6.74 99.48 0.67 -11.27 16 7 C -0.53 -30.73 10.04 67.95 0.68 -30.05 16 8 H 0.06 3.90 8.03 -2.91 -0.02 3.87 16 9 S -0.18 -9.23 18.55 -56.49 -1.05 -10.28 16 10 C -0.11 -4.08 6.16 71.23 0.44 -3.64 16 11 C 0.53 18.18 7.85 87.66 0.69 18.87 16 12 O -0.57 -24.88 15.86 -3.04 -0.05 -24.92 16 13 N -0.71 -15.80 5.56 -463.06 -2.57 -18.37 16 14 C 0.13 2.62 5.51 86.38 0.48 3.10 16 15 C -0.11 -1.19 3.76 -10.18 -0.04 -1.22 16 16 C -0.12 -1.37 7.44 31.12 0.23 -1.14 16 17 C 0.08 0.58 4.16 45.44 0.19 0.77 16 18 N -0.69 -7.74 6.24 -492.86 -3.07 -10.82 16 19 C 0.05 0.23 6.02 85.56 0.52 0.74 16 20 C 0.51 6.95 7.81 87.66 0.68 7.64 16 21 O -0.52 -14.52 14.60 19.88 0.29 -14.23 16 22 N -0.67 -4.28 5.24 -440.53 -2.31 -6.59 16 23 C 0.69 9.42 8.78 179.06 1.57 10.99 16 24 N -0.83 -1.59 8.88 -184.79 -1.64 -3.23 16 25 O -0.60 -17.40 15.58 18.91 0.29 -17.10 16 26 C -0.16 -1.42 7.27 31.21 0.23 -1.20 16 27 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 28 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 29 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 30 H 0.42 6.21 8.47 -92.71 -0.79 5.43 16 31 H 0.05 1.21 7.85 -2.39 -0.02 1.20 16 32 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.13 0.21 7.88 -2.39 -0.02 0.19 16 37 H 0.35 5.24 7.91 -89.69 -0.71 4.53 16 38 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16 39 H 0.14 -0.23 8.13 -2.39 -0.02 -0.25 16 40 H 0.44 -2.50 8.71 -92.70 -0.81 -3.30 16 41 H 0.42 -3.00 8.84 -92.71 -0.82 -3.82 16 42 H 0.42 0.65 8.93 -92.70 -0.83 -0.18 16 43 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.07 0.91 7.59 -2.39 -0.02 0.89 16 Total: -1.00 -100.25 389.20 -4.66 -104.91 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -2.89 Total: 0.65 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 6.13 Total: 8.14 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -9.29 Total: -94.40 kcal Atomic # 8 Polarization: -56.80 SS G_CDS: 0.54 Total: -56.26 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.90 Total: 47.22 kcal Atomic # 16 Polarization: -9.23 SS G_CDS: -1.05 Total: -10.28 kcal Total: -100.25 -4.66 -104.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691894940.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.427 kcal (2) G-P(sol) polarization free energy of solvation -100.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds