Wall clock time and date at job start Wed Apr 1 2020 03:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86808 * 119.99442 * 2 1 4 4 H 1.48498 * 109.46635 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47169 * 299.99881 * 3 2 1 6 6 H 1.48499 * 109.47081 * 60.00129 * 3 2 1 7 7 C 1.38796 * 120.00345 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00045 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99860 * 0.02562 * 7 2 1 10 10 C 1.81007 * 99.99805 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46923 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00282 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99763 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99952 * 179.97438 * 13 11 10 15 15 C 1.53773 * 113.61686 * 254.13880 * 14 13 11 16 16 C 1.54049 * 86.98868 * 270.83833 * 15 14 13 17 17 C 1.53002 * 113.62545 * 220.02302 * 16 15 14 18 18 N 1.46502 * 109.46813 * 272.49316 * 17 16 15 19 19 C 1.34780 * 119.99751 * 179.97438 * 18 17 16 20 20 O 1.21274 * 120.00113 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99768 * 180.02562 * 19 18 17 22 22 N 1.46505 * 109.46932 * 179.97438 * 21 19 18 23 23 C 1.34777 * 119.99677 * 179.97438 * 22 21 19 24 24 N 1.34775 * 119.99333 * 180.02562 * 23 22 21 25 25 O 1.21586 * 120.00416 * 0.02562 * 23 22 21 26 26 C 1.53781 * 113.61361 * 156.53041 * 14 13 11 27 27 H 0.96993 * 120.00496 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47125 * 59.99498 * 10 9 7 29 29 H 1.09002 * 109.46654 * 299.99954 * 10 9 7 30 30 H 0.96997 * 120.00341 * 359.97438 * 13 11 10 31 31 H 1.09002 * 112.84852 * 25.33640 * 14 13 11 32 32 H 1.09007 * 113.61678 * 25.42910 * 15 14 13 33 33 H 1.09000 * 113.61916 * 156.33583 * 15 14 13 34 34 H 1.09005 * 113.68989 * 89.12112 * 16 15 14 35 35 H 1.09005 * 109.46483 * 32.48989 * 17 16 15 36 36 H 1.08995 * 109.47301 * 152.49438 * 17 16 15 37 37 H 0.97002 * 119.99977 * 0.02562 * 18 17 16 38 38 H 1.09000 * 109.46977 * 300.00010 * 21 19 18 39 39 H 1.09004 * 109.47306 * 60.00591 * 21 19 18 40 40 H 0.97000 * 119.99699 * 0.02562 * 22 21 19 41 41 H 0.96994 * 120.00253 * 359.97438 * 24 23 22 42 42 H 0.97002 * 119.99670 * 180.02562 * 24 23 22 43 43 H 1.09001 * 113.61158 * 203.66864 * 26 14 13 44 44 H 1.08998 * 113.61196 * 334.56885 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0019 10 6 2.5161 -3.8913 -0.0013 11 6 1.9876 -5.3026 -0.0018 12 8 0.7913 -5.5023 -0.0028 13 7 2.8445 -6.3429 -0.0020 14 6 2.3308 -7.7150 -0.0018 15 6 2.4758 -8.4269 1.3535 16 6 3.8633 -8.8898 0.8700 17 6 4.1976 -10.3320 1.2565 18 7 4.8108 -10.3514 2.5868 19 6 5.1901 -11.5219 3.1370 20 8 5.0243 -12.5589 2.5305 21 6 5.8204 -11.5419 4.5057 22 7 6.1395 -12.9229 4.8762 23 6 6.7146 -13.1856 6.0665 24 7 7.0086 -14.4560 6.4070 25 8 6.9681 -12.2764 6.8330 26 6 3.3251 -8.7451 -0.5632 27 1 -0.4850 0.8399 -0.0004 28 1 3.1240 -3.7316 0.8891 29 1 3.1253 -3.7308 -0.8908 30 1 3.8012 -6.1833 -0.0022 31 1 1.3321 -7.7931 -0.4314 32 1 2.5130 -7.7451 2.2032 33 1 1.7682 -9.2437 1.4957 34 1 4.6655 -8.1911 1.1078 35 1 3.2836 -10.9258 1.2689 36 1 4.8934 -10.7509 0.5296 37 1 4.9431 -9.5219 3.0721 38 1 6.7343 -10.9481 4.4935 39 1 5.1243 -11.1228 5.2324 40 1 5.9375 -13.6482 4.2645 41 1 6.8059 -15.1813 5.7957 42 1 7.4221 -14.6451 7.2638 43 1 2.8491 -9.6486 -0.9442 44 1 4.0474 -8.3198 -1.2600 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701090656.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:47 Heat of formation + Delta-G solvation = -89.192237 kcal Electronic energy + Delta-G solvation = -25883.856777 eV Core-core repulsion = 21769.950234 eV Total energy + Delta-G solvation = -4113.906543 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.82449 -40.27673 -39.58580 -38.19129 -35.28879 -34.79658 -34.02832 -33.07096 -32.45425 -29.87051 -28.80927 -26.88297 -26.01969 -25.50817 -22.95657 -21.71976 -21.24764 -20.80621 -19.57201 -19.01243 -18.10734 -17.87094 -16.93843 -16.76122 -16.53781 -16.25299 -16.09673 -15.51573 -15.13579 -15.04704 -14.84823 -14.82269 -14.62902 -14.24714 -14.03680 -13.67245 -13.40746 -13.18265 -13.00844 -12.78781 -12.56701 -12.36561 -11.85766 -11.38459 -11.09314 -11.04929 -10.97922 -10.84438 -10.78593 -10.62069 -10.39258 -10.21460 -9.83129 -9.70110 -9.54863 -9.46588 -9.10437 -8.94869 -8.26678 -6.53213 -6.24428 -3.95269 2.01315 2.11894 2.71518 2.80805 2.96154 3.00631 3.19774 3.26051 3.30275 3.64120 3.97624 4.05634 4.13483 4.17726 4.29261 4.38075 4.60670 4.79250 4.81693 4.83212 5.08370 5.11061 5.17400 5.26249 5.40206 5.42865 5.53088 5.67884 5.72297 5.76279 5.78684 5.84047 5.90876 5.98070 6.09315 6.17353 6.41087 6.62952 6.88217 7.42366 7.57214 7.58383 7.63855 8.10648 8.32689 8.55130 9.21177 10.83061 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.001489 C = 0.001405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.685801 B =18799.527197 C =19924.245563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.514 6.514 13 N -0.722 5.722 14 C 0.124 3.876 15 C -0.148 4.148 16 C -0.127 4.127 17 C 0.130 3.870 18 N -0.721 5.721 19 C 0.509 3.491 20 O -0.541 6.541 21 C 0.118 3.882 22 N -0.735 5.735 23 C 0.709 3.291 24 N -0.865 5.865 25 O -0.595 6.595 26 C -0.135 4.135 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.406 0.594 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.408 0.592 41 H 0.399 0.601 42 H 0.417 0.583 43 H 0.097 0.903 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.507 -28.369 5.858 32.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.388 6.388 13 N -0.376 5.376 14 C 0.018 3.982 15 C -0.187 4.187 16 C -0.146 4.146 17 C 0.007 3.993 18 N -0.373 5.373 19 C 0.295 3.705 20 O -0.418 6.418 21 C -0.011 4.011 22 N -0.395 5.395 23 C 0.406 3.594 24 N -0.433 5.433 25 O -0.473 6.473 26 C -0.174 4.174 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.232 0.768 31 H 0.121 0.879 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.241 0.759 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.246 0.754 41 H 0.227 0.773 42 H 0.249 0.751 43 H 0.115 0.885 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.342 -28.432 5.921 31.555 hybrid contribution 2.508 1.003 0.020 2.702 sum 14.851 -27.429 5.941 31.752 Atomic orbital electron populations 1.70020 1.05962 1.27394 1.46881 1.24990 0.95016 0.99038 0.94494 0.86118 0.79577 0.81880 0.77928 1.19620 1.20554 1.20546 1.22905 0.94937 0.91627 1.58941 0.90867 1.85418 1.04843 0.96364 1.96719 1.23535 1.06645 0.95315 1.04944 1.20342 0.86550 0.86250 0.74803 1.90708 1.15374 1.85513 1.47213 1.45713 1.09715 1.04621 1.77516 1.21688 0.98985 0.81200 0.96329 1.23596 0.95820 1.00589 0.98696 1.22947 0.98259 0.95542 0.97827 1.21453 0.98276 0.96668 0.82888 1.45903 1.62488 1.09079 1.19812 1.20512 0.78335 0.84000 0.87681 1.90705 1.55462 1.32233 1.63396 1.20896 1.01999 0.84461 0.93697 1.44691 1.66624 1.09079 1.19081 1.15838 0.78217 0.83667 0.81632 1.42927 1.69387 1.06646 1.24354 1.90999 1.60026 1.44364 1.51913 1.23289 0.98905 0.99713 0.95466 0.92203 0.89209 0.89183 0.76818 0.87872 0.90639 0.89065 0.88410 0.90881 0.91095 0.75902 0.88216 0.88153 0.75426 0.77339 0.75109 0.88462 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.54 -15.03 9.50 30.94 0.29 -14.73 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -2.96 6.16 36.00 0.22 -2.74 16 11 C 0.53 9.36 7.85 -10.99 -0.09 9.27 16 12 O -0.51 -11.20 15.48 5.55 0.09 -11.12 16 13 N -0.72 -8.48 5.26 -53.02 -0.28 -8.76 16 14 C 0.12 1.23 4.30 -67.12 -0.29 0.94 16 15 C -0.15 -1.17 7.45 -25.78 -0.19 -1.36 16 16 C -0.13 -0.70 3.65 -89.67 -0.33 -1.03 16 17 C 0.13 0.76 5.51 -4.04 -0.02 0.73 16 18 N -0.72 -3.77 5.56 -60.29 -0.33 -4.11 16 19 C 0.51 3.53 7.90 -10.98 -0.09 3.44 16 20 O -0.54 -5.44 15.67 5.56 0.09 -5.36 16 21 C 0.12 0.70 6.15 -5.19 -0.03 0.67 16 22 N -0.73 -4.79 5.53 -66.41 -0.37 -5.16 16 23 C 0.71 5.70 8.84 -86.92 -0.77 4.93 16 24 N -0.87 -3.40 8.88 27.63 0.25 -3.15 16 25 O -0.59 -7.37 17.18 5.29 0.09 -7.28 16 26 C -0.14 -0.87 7.38 -25.92 -0.19 -1.06 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 29 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 30 H 0.40 3.50 8.70 -40.82 -0.36 3.14 16 31 H 0.10 1.26 7.50 -51.93 -0.39 0.87 16 32 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 33 H 0.09 0.68 7.90 -51.93 -0.41 0.27 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.49 7.85 -51.93 -0.41 0.08 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.41 1.32 8.47 -40.82 -0.35 0.97 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.41 2.31 7.45 -40.82 -0.30 2.00 16 41 H 0.40 0.47 8.84 -40.82 -0.36 0.11 16 42 H 0.42 1.24 8.93 -40.82 -0.36 0.88 16 43 H 0.10 0.54 8.10 -51.93 -0.42 0.12 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 393.40 15.07 5.93 5.93 Total: -1.00 -39.39 393.40 -8.90 -48.30 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.28 Total: 2.49 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -1.57 Total: 1.05 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.00 Total: -46.33 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.26 Total: -23.75 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.39 -8.90 -48.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701090656.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.895 kcal (2) G-P(sol) polarization free energy of solvation -39.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds