Wall clock time and date at job start Wed Apr 1 2020 03:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86808 * 119.99442 * 2 1 4 4 H 1.48498 * 109.46635 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47169 * 299.99881 * 3 2 1 6 6 H 1.48499 * 109.47081 * 60.00129 * 3 2 1 7 7 C 1.38796 * 120.00345 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00045 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99860 * 0.02562 * 7 2 1 10 10 C 1.81007 * 99.99805 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46923 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00282 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99763 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99952 * 179.97438 * 13 11 10 15 15 C 1.53773 * 113.61686 * 254.13880 * 14 13 11 16 16 C 1.54049 * 86.98868 * 270.83833 * 15 14 13 17 17 C 1.53002 * 113.62545 * 220.02302 * 16 15 14 18 18 N 1.46502 * 109.46813 * 272.49316 * 17 16 15 19 19 C 1.34780 * 119.99751 * 179.97438 * 18 17 16 20 20 O 1.21274 * 120.00113 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99768 * 180.02562 * 19 18 17 22 22 N 1.46505 * 109.46932 * 179.97438 * 21 19 18 23 23 C 1.34777 * 119.99677 * 179.97438 * 22 21 19 24 24 N 1.34775 * 119.99333 * 180.02562 * 23 22 21 25 25 O 1.21586 * 120.00416 * 0.02562 * 23 22 21 26 26 C 1.53781 * 113.61361 * 156.53041 * 14 13 11 27 27 H 0.96993 * 120.00496 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47125 * 59.99498 * 10 9 7 29 29 H 1.09002 * 109.46654 * 299.99954 * 10 9 7 30 30 H 0.96997 * 120.00341 * 359.97438 * 13 11 10 31 31 H 1.09002 * 112.84852 * 25.33640 * 14 13 11 32 32 H 1.09007 * 113.61678 * 25.42910 * 15 14 13 33 33 H 1.09000 * 113.61916 * 156.33583 * 15 14 13 34 34 H 1.09005 * 113.68989 * 89.12112 * 16 15 14 35 35 H 1.09005 * 109.46483 * 32.48989 * 17 16 15 36 36 H 1.08995 * 109.47301 * 152.49438 * 17 16 15 37 37 H 0.97002 * 119.99977 * 0.02562 * 18 17 16 38 38 H 1.09000 * 109.46977 * 300.00010 * 21 19 18 39 39 H 1.09004 * 109.47306 * 60.00591 * 21 19 18 40 40 H 0.97000 * 119.99699 * 0.02562 * 22 21 19 41 41 H 0.96994 * 120.00253 * 359.97438 * 24 23 22 42 42 H 0.97002 * 119.99670 * 180.02562 * 24 23 22 43 43 H 1.09001 * 113.61158 * 203.66864 * 26 14 13 44 44 H 1.08998 * 113.61196 * 334.56885 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0019 10 6 2.5161 -3.8913 -0.0013 11 6 1.9876 -5.3026 -0.0018 12 8 0.7913 -5.5023 -0.0028 13 7 2.8445 -6.3429 -0.0020 14 6 2.3308 -7.7150 -0.0018 15 6 2.4758 -8.4269 1.3535 16 6 3.8633 -8.8898 0.8700 17 6 4.1976 -10.3320 1.2565 18 7 4.8108 -10.3514 2.5868 19 6 5.1901 -11.5219 3.1370 20 8 5.0243 -12.5589 2.5305 21 6 5.8204 -11.5419 4.5057 22 7 6.1395 -12.9229 4.8762 23 6 6.7146 -13.1856 6.0665 24 7 7.0086 -14.4560 6.4070 25 8 6.9681 -12.2764 6.8330 26 6 3.3251 -8.7451 -0.5632 27 1 -0.4850 0.8399 -0.0004 28 1 3.1240 -3.7316 0.8891 29 1 3.1253 -3.7308 -0.8908 30 1 3.8012 -6.1833 -0.0022 31 1 1.3321 -7.7931 -0.4314 32 1 2.5130 -7.7451 2.2032 33 1 1.7682 -9.2437 1.4957 34 1 4.6655 -8.1911 1.1078 35 1 3.2836 -10.9258 1.2689 36 1 4.8934 -10.7509 0.5296 37 1 4.9431 -9.5219 3.0721 38 1 6.7343 -10.9481 4.4935 39 1 5.1243 -11.1228 5.2324 40 1 5.9375 -13.6482 4.2645 41 1 6.8059 -15.1813 5.7957 42 1 7.4221 -14.6451 7.2638 43 1 2.8491 -9.6486 -0.9442 44 1 4.0474 -8.3198 -1.2600 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701090656.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:46 Heat of formation + Delta-G solvation = -124.317555 kcal Electronic energy + Delta-G solvation = -25885.379925 eV Core-core repulsion = 21769.950234 eV Total energy + Delta-G solvation = -4115.429691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.135 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.45932 -41.09833 -40.29200 -39.26984 -35.93228 -35.42580 -34.58225 -34.50910 -34.15742 -30.97376 -29.71721 -27.72712 -27.41585 -26.62628 -23.65809 -22.27416 -22.13487 -21.65553 -20.31999 -19.82118 -19.57094 -18.58254 -17.91940 -17.43762 -17.15905 -17.05692 -16.99778 -16.87255 -16.41920 -16.16731 -15.92929 -15.58729 -15.38787 -15.32693 -14.91668 -14.67574 -14.50907 -14.22801 -13.88081 -13.79910 -13.45317 -13.32691 -13.15059 -12.91998 -12.81145 -12.59412 -11.95415 -11.70780 -11.68075 -11.57345 -11.24899 -11.15293 -11.01941 -10.92683 -10.76801 -10.25692 -10.20514 -10.05543 -9.98804 -8.65661 -8.34209 -6.11993 1.28198 1.41970 1.47899 1.48343 1.58997 1.61704 1.64482 2.11531 2.25952 2.30478 2.34416 3.00344 3.33130 3.50135 3.51646 3.61969 3.78487 3.82117 3.90101 4.01652 4.32171 4.33349 4.35515 4.39338 4.52805 4.60997 4.71747 4.83690 4.88227 4.93066 5.08425 5.15135 5.25134 5.27883 5.41451 5.43046 5.68128 5.81072 6.01737 6.20742 6.43616 6.54683 6.99164 7.07586 7.10665 7.28926 7.59309 8.75234 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.001489 C = 0.001405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.685801 B =18799.527197 C =19924.245563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.536 3.464 12 O -0.566 6.566 13 N -0.694 5.694 14 C 0.104 3.896 15 C -0.145 4.145 16 C -0.105 4.105 17 C 0.134 3.866 18 N -0.711 5.711 19 C 0.513 3.487 20 O -0.574 6.574 21 C 0.118 3.882 22 N -0.730 5.730 23 C 0.703 3.297 24 N -0.847 5.847 25 O -0.642 6.642 26 C -0.119 4.119 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.417 0.583 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.418 0.582 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.413 0.587 41 H 0.414 0.586 42 H 0.422 0.578 43 H 0.109 0.891 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.396 -29.101 5.788 34.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.281 4.281 11 C 0.322 3.678 12 O -0.444 6.444 13 N -0.347 5.347 14 C -0.001 4.001 15 C -0.184 4.184 16 C -0.124 4.124 17 C 0.010 3.990 18 N -0.363 5.363 19 C 0.299 3.701 20 O -0.454 6.454 21 C -0.010 4.010 22 N -0.390 5.390 23 C 0.401 3.599 24 N -0.416 5.416 25 O -0.524 6.524 26 C -0.158 4.158 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.254 0.746 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.133 0.867 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.255 0.745 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.252 0.748 41 H 0.245 0.755 42 H 0.256 0.744 43 H 0.127 0.873 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.287 -29.225 5.837 33.494 hybrid contribution 1.625 1.067 0.027 1.944 sum 16.912 -28.159 5.864 33.367 Atomic orbital electron populations 1.70185 1.07996 1.28527 1.48138 1.26110 0.95923 1.03290 0.93759 0.84917 0.78674 0.76408 0.78019 1.17940 1.20025 1.20018 1.23244 0.95371 0.91996 1.58685 0.89832 1.85609 1.10707 0.99321 1.97050 1.23375 1.03477 0.94341 1.06876 1.20066 0.86262 0.86683 0.74816 1.90698 1.17575 1.86046 1.50113 1.45398 1.10005 1.04232 1.75060 1.21941 0.98911 0.80667 0.98625 1.23571 0.97682 1.00200 0.96944 1.22821 0.97195 0.95708 0.96681 1.21382 0.98023 0.96472 0.83092 1.45828 1.61584 1.09211 1.19650 1.20606 0.77904 0.83839 0.87709 1.90693 1.56984 1.33421 1.64255 1.20951 1.02447 0.84428 0.93176 1.44661 1.66085 1.09559 1.18691 1.16055 0.78151 0.84197 0.81529 1.42779 1.68196 1.05800 1.24822 1.90963 1.62112 1.46043 1.53317 1.23247 0.97782 0.98590 0.96174 0.92027 0.87081 0.87156 0.74551 0.90694 0.91644 0.88695 0.86699 0.91655 0.90911 0.74534 0.87345 0.87694 0.74836 0.75548 0.74421 0.87280 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.61 13.22 21.65 0.29 -55.33 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.04 29.55 68.60 2.03 45.07 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.55 -30.63 9.50 67.95 0.65 -29.98 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 10 C -0.13 -4.87 6.16 71.23 0.44 -4.43 16 11 C 0.54 18.52 7.85 87.66 0.69 19.21 16 12 O -0.57 -25.41 15.48 -3.05 -0.05 -25.45 16 13 N -0.69 -14.98 5.26 -440.04 -2.32 -17.30 16 14 C 0.10 1.93 4.30 45.51 0.20 2.12 16 15 C -0.15 -2.05 7.45 31.21 0.23 -1.82 16 16 C -0.11 -0.84 3.65 -10.18 -0.04 -0.88 16 17 C 0.13 1.20 5.51 86.38 0.48 1.68 16 18 N -0.71 -5.76 5.56 -463.06 -2.57 -8.33 16 19 C 0.51 6.26 7.90 87.66 0.69 6.95 16 20 O -0.57 -10.79 15.67 -3.01 -0.05 -10.84 16 21 C 0.12 1.25 6.15 85.63 0.53 1.78 16 22 N -0.73 -8.73 5.53 -482.28 -2.67 -11.39 16 23 C 0.70 10.70 8.84 179.05 1.58 12.28 16 24 N -0.85 -5.57 8.88 -184.75 -1.64 -7.21 16 25 O -0.64 -15.72 17.18 -3.99 -0.07 -15.79 16 26 C -0.12 -1.18 7.38 31.12 0.23 -0.95 16 27 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 28 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 29 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 30 H 0.42 5.91 8.70 -92.71 -0.81 5.10 16 31 H 0.07 1.86 7.50 -2.39 -0.02 1.84 16 32 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.09 1.30 7.90 -2.39 -0.02 1.28 16 34 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.07 0.74 7.85 -2.38 -0.02 0.72 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.42 1.55 8.47 -92.71 -0.79 0.76 16 38 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.41 4.18 7.45 -92.71 -0.69 3.49 16 41 H 0.41 0.27 8.84 -92.71 -0.82 -0.55 16 42 H 0.42 2.01 8.93 -92.71 -0.83 1.19 16 43 H 0.11 0.90 8.10 -2.39 -0.02 0.88 16 44 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -89.25 393.40 -4.91 -94.16 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -2.83 Total: 14.77 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 6.14 Total: 7.20 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -8.91 Total: -99.56 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -0.16 Total: -52.08 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -89.25 -4.91 -94.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701090656.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.159 kcal (2) G-P(sol) polarization free energy of solvation -89.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds