Wall clock time and date at job start Wed Apr 1 2020 03:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86806 * 119.99855 * 2 1 4 4 H 1.48503 * 109.46897 * 270.00136 * 3 2 1 5 5 H 1.48503 * 109.46927 * 29.99839 * 3 2 1 6 6 H 1.48499 * 109.47056 * 149.99942 * 3 2 1 7 7 C 1.38800 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99636 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00255 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00101 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47012 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00372 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99825 * 180.02562 * 11 10 9 14 14 C 1.46510 * 119.99913 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46971 * 179.97438 * 14 13 11 16 16 H 1.09005 * 109.47475 * 294.99786 * 15 14 13 17 17 N 1.46495 * 109.47430 * 55.00029 * 15 14 13 18 18 C 1.34776 * 120.00573 * 204.99724 * 17 15 14 19 19 O 1.21285 * 119.99717 * 0.02562 * 18 17 15 20 20 C 1.50694 * 120.00347 * 179.97438 * 18 17 15 21 21 N 1.46501 * 109.47024 * 180.02562 * 20 18 17 22 22 C 1.34775 * 119.99852 * 180.02562 * 21 20 18 23 23 N 1.34780 * 120.00164 * 180.02562 * 22 21 20 24 24 O 1.21583 * 120.00348 * 359.97438 * 22 21 20 25 25 C 1.53003 * 109.46999 * 175.00231 * 15 14 13 26 26 C 1.53001 * 117.51964 * 111.28362 * 25 15 14 27 27 C 1.52999 * 60.00190 * 107.47982 * 26 25 15 28 28 H 0.96996 * 120.00067 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.46554 * 60.00421 * 10 9 7 30 30 H 1.08996 * 109.47880 * 300.00637 * 10 9 7 31 31 H 0.96992 * 120.00193 * 359.97438 * 13 11 10 32 32 H 1.08998 * 109.46981 * 59.99955 * 14 13 11 33 33 H 1.08998 * 109.46837 * 299.99947 * 14 13 11 34 34 H 0.97002 * 119.99615 * 24.99601 * 17 15 14 35 35 H 1.08995 * 109.47252 * 300.00380 * 20 18 17 36 36 H 1.09005 * 109.47084 * 60.00526 * 20 18 17 37 37 H 0.96997 * 120.00497 * 0.02562 * 21 20 18 38 38 H 0.97005 * 119.99828 * 359.97438 * 23 22 21 39 39 H 0.96997 * 120.00017 * 179.97438 * 23 22 21 40 40 H 1.09002 * 115.54973 * 325.58146 * 25 15 14 41 41 H 1.09001 * 117.49733 * 214.97413 * 26 25 15 42 42 H 1.08995 * 117.49577 * 359.97438 * 26 25 15 43 43 H 1.09004 * 117.50150 * 252.51496 * 27 26 25 44 44 H 1.09004 * 117.49681 * 107.48417 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1295 -2.7280 0.0019 10 6 2.5160 -3.8913 0.0013 11 6 1.9876 -5.3026 0.0030 12 8 0.7914 -5.5023 0.0040 13 7 2.8444 -6.3430 0.0035 14 6 2.3307 -7.7151 0.0045 15 6 3.5028 -8.6984 0.0042 16 1 4.0597 -8.5998 -0.9277 17 7 4.3869 -8.4049 1.1348 18 6 5.6870 -8.7566 1.0828 19 8 6.1250 -9.3157 0.0997 20 6 6.5965 -8.4540 2.2456 21 7 7.9485 -8.9318 1.9451 22 6 8.9366 -8.7689 2.8471 23 7 10.1806 -9.2079 2.5705 24 8 8.7062 -8.2251 3.9098 25 6 2.9699 -10.1270 0.1309 26 6 3.1129 -11.0453 -1.0845 27 6 3.9937 -11.2640 0.1473 28 1 -0.4850 0.8400 0.0004 29 1 3.1253 -3.7308 0.8909 30 1 3.1241 -3.7317 -0.8890 31 1 3.8011 -6.1834 0.0023 32 1 1.7218 -7.8757 -0.8852 33 1 1.7224 -7.8745 0.8948 34 1 4.0366 -7.9573 1.9209 35 1 6.6215 -7.3779 2.4169 36 1 6.2236 -8.9557 3.1386 37 1 8.1325 -9.3653 1.0972 38 1 10.3645 -9.6414 1.7225 39 1 10.8918 -9.0903 3.2195 40 1 2.0786 -10.2434 0.7476 41 1 2.3156 -11.7657 -1.2675 42 1 3.5862 -10.6316 -1.9748 43 1 5.0467 -10.9942 0.0674 44 1 3.7758 -12.1284 0.7748 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720724122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:44 Heat of formation + Delta-G solvation = -80.162375 kcal Electronic energy + Delta-G solvation = -26983.608870 eV Core-core repulsion = 22870.093892 eV Total energy + Delta-G solvation = -4113.514979 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.92849 -39.98504 -39.14388 -37.76758 -35.42792 -34.77279 -33.97707 -33.71250 -32.44656 -30.63506 -28.85318 -27.40582 -25.50993 -23.56051 -22.61416 -21.90058 -21.26865 -20.90150 -20.24543 -19.11319 -18.08825 -17.82636 -17.14523 -16.70731 -16.62454 -16.22564 -15.98939 -15.57731 -15.29181 -15.12382 -14.84015 -14.81756 -14.47746 -14.34986 -13.84901 -13.59842 -13.31028 -13.09379 -12.93505 -12.63266 -12.37182 -12.09354 -11.75221 -11.69822 -11.07741 -11.04311 -10.81481 -10.78549 -10.72970 -10.60927 -10.32357 -10.13349 -9.84252 -9.62577 -9.52718 -9.44045 -9.09870 -9.02325 -8.27046 -6.52796 -6.23629 -3.94537 2.02449 2.14753 2.77196 2.80052 2.96156 3.01834 3.21510 3.26439 3.30241 3.53649 3.64715 4.05603 4.17993 4.18669 4.22529 4.48202 4.70008 4.75681 4.88118 4.90053 4.92422 5.08449 5.11672 5.12774 5.39471 5.41416 5.53055 5.62474 5.71659 5.82564 5.83634 5.87232 5.88165 6.03321 6.09559 6.24732 6.45775 6.48823 6.93290 7.50081 7.56517 7.58510 7.63474 8.18923 8.33307 8.51094 9.21902 10.83761 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.009595 B = 0.002350 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.427603 B =11909.504955 C =14456.673669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.515 6.515 13 N -0.741 5.741 14 C 0.117 3.883 15 C 0.167 3.833 16 H 0.098 0.902 17 N -0.716 5.716 18 C 0.515 3.485 19 O -0.535 6.535 20 C 0.117 3.883 21 N -0.734 5.734 22 C 0.708 3.292 23 N -0.865 5.865 24 O -0.594 6.594 25 C -0.171 4.171 26 C -0.167 4.167 27 C -0.180 4.180 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.408 0.592 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.408 0.592 38 H 0.398 0.602 39 H 0.416 0.584 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.116 0.884 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.267 -24.614 1.604 29.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.388 6.388 13 N -0.396 5.396 14 C -0.008 4.008 15 C 0.063 3.937 16 H 0.116 0.884 17 N -0.368 5.368 18 C 0.301 3.699 19 O -0.413 6.413 20 C -0.011 4.011 21 N -0.394 5.394 22 C 0.406 3.594 23 N -0.433 5.433 24 O -0.472 6.472 25 C -0.191 4.191 26 C -0.205 4.205 27 C -0.217 4.217 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.243 0.757 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.245 0.755 38 H 0.226 0.774 39 H 0.249 0.751 40 H 0.128 0.872 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.134 0.866 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 14.008 -24.741 1.752 28.485 hybrid contribution 2.626 1.146 -0.161 2.870 sum 16.634 -23.595 1.591 28.912 Atomic orbital electron populations 1.70014 1.05950 1.27493 1.46817 1.24995 0.95034 0.99050 0.94501 0.86166 0.79427 0.81540 0.78358 1.20272 1.20736 1.19672 1.22860 0.94899 0.91618 1.59022 0.90923 1.85395 1.04795 0.96351 1.96726 1.23534 1.06669 0.95293 1.04967 1.20322 0.86468 0.86250 0.75040 1.90715 1.15320 1.85558 1.47237 1.45992 1.10063 1.05197 1.78373 1.21535 0.94896 0.80473 1.03868 1.20833 0.90268 0.92269 0.90376 0.88365 1.45990 1.08800 1.60912 1.21069 1.20490 0.82832 0.78118 0.88452 1.90644 1.75208 1.41892 1.33540 1.20899 0.81558 1.02299 0.96358 1.44667 1.07960 1.65504 1.21253 1.15838 0.80866 0.79139 0.83529 1.42929 1.09885 1.66741 1.23791 1.91004 1.82478 1.49041 1.24658 1.22569 1.01880 0.90794 1.03842 1.22940 1.02803 1.02197 0.92527 1.23257 0.98573 0.98880 1.00966 0.92160 0.89183 0.89221 0.76777 0.89680 0.90693 0.75655 0.88018 0.88175 0.75457 0.77383 0.75136 0.87213 0.88680 0.88543 0.86579 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.15 -2.98 6.16 36.00 0.22 -2.75 16 11 C 0.53 9.23 7.85 -10.99 -0.09 9.15 16 12 O -0.51 -11.04 15.86 5.56 0.09 -10.95 16 13 N -0.74 -8.58 5.39 -60.29 -0.32 -8.91 16 14 C 0.12 1.12 5.22 -4.04 -0.02 1.10 16 15 C 0.17 1.25 2.43 -67.93 -0.17 1.08 16 16 H 0.10 0.85 7.34 -51.93 -0.38 0.47 16 17 N -0.72 -4.44 4.50 -53.81 -0.24 -4.68 16 18 C 0.51 3.67 7.23 -10.99 -0.08 3.59 16 19 O -0.54 -5.01 12.69 5.55 0.07 -4.94 16 20 C 0.12 0.78 6.15 -5.20 -0.03 0.75 16 21 N -0.73 -5.16 5.53 -66.42 -0.37 -5.53 16 22 C 0.71 6.23 8.84 -86.92 -0.77 5.46 16 23 N -0.87 -4.07 8.88 27.63 0.25 -3.83 16 24 O -0.59 -7.88 17.18 5.29 0.09 -7.79 16 25 C -0.17 -1.23 5.36 -90.61 -0.49 -1.72 16 26 C -0.17 -1.21 10.18 -26.73 -0.27 -1.49 16 27 C -0.18 -1.37 9.73 -26.73 -0.26 -1.63 16 28 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 30 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 31 H 0.40 3.75 8.14 -40.82 -0.33 3.42 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.41 2.03 8.60 -40.82 -0.35 1.68 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.41 2.45 7.45 -40.82 -0.30 2.14 16 38 H 0.40 0.77 8.84 -40.82 -0.36 0.40 16 39 H 0.42 1.59 8.93 -40.82 -0.36 1.23 16 40 H 0.11 0.75 8.11 -51.93 -0.42 0.33 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.73 8.05 -51.93 -0.42 0.31 16 43 H 0.12 1.05 5.02 -51.93 -0.26 0.79 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 390.57 15.07 5.89 5.89 Total: -1.00 -38.07 390.57 -8.93 -46.99 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.12 Total: 5.77 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.75 Total: 0.73 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.04 Total: -48.17 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: 0.25 Total: -23.69 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.07 -8.93 -46.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720724122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.169 kcal (2) G-P(sol) polarization free energy of solvation -38.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds