Wall clock time and date at job start Wed Apr 1 2020 03:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86806 * 119.99855 * 2 1 4 4 H 1.48503 * 109.46897 * 270.00136 * 3 2 1 5 5 H 1.48503 * 109.46927 * 29.99839 * 3 2 1 6 6 H 1.48499 * 109.47056 * 149.99942 * 3 2 1 7 7 C 1.38800 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99636 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00255 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00101 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47012 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00372 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99825 * 180.02562 * 11 10 9 14 14 C 1.46510 * 119.99913 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46971 * 179.97438 * 14 13 11 16 16 H 1.09005 * 109.47475 * 294.99786 * 15 14 13 17 17 N 1.46495 * 109.47430 * 55.00029 * 15 14 13 18 18 C 1.34776 * 120.00573 * 204.99724 * 17 15 14 19 19 O 1.21285 * 119.99717 * 0.02562 * 18 17 15 20 20 C 1.50694 * 120.00347 * 179.97438 * 18 17 15 21 21 N 1.46501 * 109.47024 * 180.02562 * 20 18 17 22 22 C 1.34775 * 119.99852 * 180.02562 * 21 20 18 23 23 N 1.34780 * 120.00164 * 180.02562 * 22 21 20 24 24 O 1.21583 * 120.00348 * 359.97438 * 22 21 20 25 25 C 1.53003 * 109.46999 * 175.00231 * 15 14 13 26 26 C 1.53001 * 117.51964 * 111.28362 * 25 15 14 27 27 C 1.52999 * 60.00190 * 107.47982 * 26 25 15 28 28 H 0.96996 * 120.00067 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.46554 * 60.00421 * 10 9 7 30 30 H 1.08996 * 109.47880 * 300.00637 * 10 9 7 31 31 H 0.96992 * 120.00193 * 359.97438 * 13 11 10 32 32 H 1.08998 * 109.46981 * 59.99955 * 14 13 11 33 33 H 1.08998 * 109.46837 * 299.99947 * 14 13 11 34 34 H 0.97002 * 119.99615 * 24.99601 * 17 15 14 35 35 H 1.08995 * 109.47252 * 300.00380 * 20 18 17 36 36 H 1.09005 * 109.47084 * 60.00526 * 20 18 17 37 37 H 0.96997 * 120.00497 * 0.02562 * 21 20 18 38 38 H 0.97005 * 119.99828 * 359.97438 * 23 22 21 39 39 H 0.96997 * 120.00017 * 179.97438 * 23 22 21 40 40 H 1.09002 * 115.54973 * 325.58146 * 25 15 14 41 41 H 1.09001 * 117.49733 * 214.97413 * 26 25 15 42 42 H 1.08995 * 117.49577 * 359.97438 * 26 25 15 43 43 H 1.09004 * 117.50150 * 252.51496 * 27 26 25 44 44 H 1.09004 * 117.49681 * 107.48417 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1295 -2.7280 0.0019 10 6 2.5160 -3.8913 0.0013 11 6 1.9876 -5.3026 0.0030 12 8 0.7914 -5.5023 0.0040 13 7 2.8444 -6.3430 0.0035 14 6 2.3307 -7.7151 0.0045 15 6 3.5028 -8.6984 0.0042 16 1 4.0597 -8.5998 -0.9277 17 7 4.3869 -8.4049 1.1348 18 6 5.6870 -8.7566 1.0828 19 8 6.1250 -9.3157 0.0997 20 6 6.5965 -8.4540 2.2456 21 7 7.9485 -8.9318 1.9451 22 6 8.9366 -8.7689 2.8471 23 7 10.1806 -9.2079 2.5705 24 8 8.7062 -8.2251 3.9098 25 6 2.9699 -10.1270 0.1309 26 6 3.1129 -11.0453 -1.0845 27 6 3.9937 -11.2640 0.1473 28 1 -0.4850 0.8400 0.0004 29 1 3.1253 -3.7308 0.8909 30 1 3.1241 -3.7317 -0.8890 31 1 3.8011 -6.1834 0.0023 32 1 1.7218 -7.8757 -0.8852 33 1 1.7224 -7.8745 0.8948 34 1 4.0366 -7.9573 1.9209 35 1 6.6215 -7.3779 2.4169 36 1 6.2236 -8.9557 3.1386 37 1 8.1325 -9.3653 1.0972 38 1 10.3645 -9.6414 1.7225 39 1 10.8918 -9.0903 3.2195 40 1 2.0786 -10.2434 0.7476 41 1 2.3156 -11.7657 -1.2675 42 1 3.5862 -10.6316 -1.9748 43 1 5.0467 -10.9942 0.0674 44 1 3.7758 -12.1284 0.7748 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720724122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:42 Heat of formation + Delta-G solvation = -113.169760 kcal Electronic energy + Delta-G solvation = -26985.040178 eV Core-core repulsion = 22870.093892 eV Total energy + Delta-G solvation = -4114.946286 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58683 -40.78052 -40.29732 -38.46502 -36.28777 -35.45559 -34.70831 -34.57220 -34.43176 -31.77054 -29.92592 -28.15304 -27.62033 -24.40284 -23.20230 -22.53864 -21.98717 -21.66949 -21.24788 -19.92128 -19.62369 -18.55121 -17.94389 -17.67151 -17.51297 -17.10118 -16.87719 -16.82929 -16.55603 -16.16844 -15.96221 -15.70966 -15.48716 -15.24017 -14.97734 -14.65819 -14.34733 -14.26820 -14.08247 -13.60366 -13.34591 -13.15819 -13.04875 -12.89013 -12.67392 -12.59858 -12.28362 -11.73215 -11.57710 -11.37270 -11.24739 -11.13802 -10.98905 -10.89906 -10.75128 -10.26650 -10.19887 -10.15756 -10.04575 -8.65140 -8.34241 -6.11579 1.27277 1.42594 1.43791 1.47196 1.55862 1.58868 1.62533 2.13629 2.17112 2.27607 2.32244 2.95932 3.00046 3.32264 3.50384 3.56748 3.69299 3.81055 4.00103 4.07850 4.16442 4.24026 4.31803 4.36649 4.41145 4.46832 4.52940 4.65039 4.84609 4.85580 5.04952 5.25281 5.25507 5.29484 5.36061 5.42720 5.43676 5.82671 6.03031 6.20408 6.38357 6.44499 7.00732 7.07527 7.07677 7.21767 7.61259 8.74784 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.009595 B = 0.002350 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.427603 B =11909.504955 C =14456.673669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.148 6.148 10 C -0.132 4.132 11 C 0.538 3.462 12 O -0.561 6.561 13 N -0.713 5.713 14 C 0.120 3.880 15 C 0.181 3.819 16 H 0.092 0.908 17 N -0.708 5.708 18 C 0.522 3.478 19 O -0.555 6.555 20 C 0.117 3.883 21 N -0.727 5.727 22 C 0.703 3.297 23 N -0.847 5.847 24 O -0.643 6.643 25 C -0.170 4.170 26 C -0.168 4.168 27 C -0.180 4.180 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.413 0.587 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.417 0.583 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.414 0.586 38 H 0.414 0.586 39 H 0.422 0.578 40 H 0.117 0.883 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.432 -25.270 1.551 31.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.079 5.921 10 C -0.283 4.283 11 C 0.323 3.677 12 O -0.439 6.439 13 N -0.367 5.367 14 C -0.004 4.004 15 C 0.076 3.924 16 H 0.110 0.890 17 N -0.361 5.361 18 C 0.309 3.691 19 O -0.434 6.434 20 C -0.011 4.011 21 N -0.387 5.387 22 C 0.400 3.600 23 N -0.416 5.416 24 O -0.525 6.525 25 C -0.189 4.189 26 C -0.206 4.206 27 C -0.217 4.217 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.250 0.750 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.254 0.746 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.253 0.747 38 H 0.244 0.756 39 H 0.255 0.745 40 H 0.135 0.865 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.122 0.878 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 16.242 -25.455 1.668 30.241 hybrid contribution 2.027 1.182 -0.175 2.353 sum 18.269 -24.273 1.493 30.417 Atomic orbital electron populations 1.70175 1.07907 1.28577 1.48048 1.26103 0.95955 1.03260 0.93816 0.84979 0.78231 0.76188 0.78744 1.19395 1.20343 1.18246 1.23199 0.95315 0.92102 1.58748 0.89998 1.85546 1.10429 0.99118 1.97040 1.23384 1.03596 0.94557 1.06766 1.19964 0.86155 0.86493 0.75055 1.90708 1.17276 1.86008 1.49884 1.45678 1.10161 1.04932 1.75918 1.21635 0.95741 0.79204 1.03853 1.20599 0.89384 0.91903 0.90516 0.89040 1.45886 1.08431 1.60725 1.21022 1.20494 0.82871 0.77592 0.88142 1.90647 1.75596 1.42851 1.34342 1.20931 0.81320 1.02567 0.96264 1.44605 1.07866 1.65098 1.21134 1.16062 0.81888 0.78972 0.83049 1.42779 1.08689 1.65596 1.24564 1.90969 1.83416 1.51385 1.26682 1.22565 1.02038 0.90281 1.04050 1.23001 1.02940 1.02343 0.92306 1.23200 0.97897 0.99183 1.01371 0.92013 0.87082 0.87504 0.75037 0.90252 0.90301 0.74647 0.87748 0.87531 0.74733 0.75566 0.74479 0.86464 0.87746 0.88946 0.87788 0.88683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.47 13.22 21.65 0.29 -55.19 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.31 29.55 68.60 2.03 45.34 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 7 C -0.55 -30.73 9.50 67.95 0.65 -30.08 16 8 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 9 S -0.15 -8.04 20.57 -56.49 -1.16 -9.20 16 10 C -0.13 -4.94 6.16 71.24 0.44 -4.51 16 11 C 0.54 18.07 7.85 87.66 0.69 18.76 16 12 O -0.56 -24.18 15.86 -3.02 -0.05 -24.23 16 13 N -0.71 -15.07 5.39 -463.06 -2.49 -17.57 16 14 C 0.12 2.08 5.22 86.38 0.45 2.53 16 15 C 0.18 2.35 2.43 44.99 0.11 2.46 16 16 H 0.09 1.40 7.34 -2.38 -0.02 1.39 16 17 N -0.71 -7.28 4.50 -442.54 -1.99 -9.27 16 18 C 0.52 6.48 7.23 87.66 0.63 7.11 16 19 O -0.56 -9.48 12.69 -3.05 -0.04 -9.51 16 20 C 0.12 1.38 6.15 85.63 0.53 1.91 16 21 N -0.73 -9.20 5.53 -482.31 -2.67 -11.86 16 22 C 0.70 11.58 8.84 179.05 1.58 13.17 16 23 N -0.85 -6.68 8.88 -184.75 -1.64 -8.32 16 24 O -0.64 -16.77 17.18 -3.98 -0.07 -16.84 16 25 C -0.17 -2.13 5.36 -10.79 -0.06 -2.18 16 26 C -0.17 -2.17 10.18 30.59 0.31 -1.86 16 27 C -0.18 -2.43 9.73 30.60 0.30 -2.13 16 28 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 29 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 30 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 31 H 0.41 6.60 8.14 -92.71 -0.75 5.85 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.42 3.14 8.60 -92.71 -0.80 2.34 16 35 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.41 4.29 7.45 -92.71 -0.69 3.60 16 38 H 0.41 0.77 8.84 -92.70 -0.82 -0.05 16 39 H 0.42 2.64 8.93 -92.71 -0.83 1.81 16 40 H 0.12 1.34 8.11 -2.39 -0.02 1.32 16 41 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.09 1.28 8.05 -2.39 -0.02 1.26 16 43 H 0.10 1.73 5.02 -2.39 -0.01 1.72 16 44 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -84.37 390.57 -4.49 -88.86 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: -2.79 Total: 21.41 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 6.09 Total: 6.39 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -8.51 Total: -102.21 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -0.15 Total: -50.58 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -1.16 Total: -9.20 kcal Total: -84.37 -4.49 -88.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720724122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.306 kcal (2) G-P(sol) polarization free energy of solvation -84.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds