Wall clock time and date at job start Wed Apr 1 2020 03:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 119.99625 * 2 1 4 4 H 1.48501 * 109.46977 * 269.99548 * 3 2 1 5 5 H 1.48499 * 109.47666 * 29.99683 * 3 2 1 6 6 H 1.48501 * 109.47086 * 150.00066 * 3 2 1 7 7 C 1.38797 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99945 * 359.97438 * 7 2 1 9 9 S 1.76192 * 119.99747 * 180.02562 * 7 2 1 10 10 C 1.81005 * 100.00090 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47244 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00363 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99864 * 179.72721 * 13 11 10 15 15 C 1.53001 * 109.47084 * 180.02562 * 14 13 11 16 16 H 1.09000 * 109.47367 * 64.99307 * 15 14 13 17 17 N 1.46505 * 109.46951 * 304.99803 * 15 14 13 18 18 C 1.34773 * 120.00181 * 155.00373 * 17 15 14 19 19 O 1.21277 * 120.00007 * 359.97438 * 18 17 15 20 20 C 1.50704 * 119.99883 * 180.02562 * 18 17 15 21 21 N 1.46499 * 109.46913 * 179.97438 * 20 18 17 22 22 C 1.34778 * 120.00181 * 179.97438 * 21 20 18 23 23 N 1.34776 * 120.00073 * 180.02562 * 22 21 20 24 24 O 1.21588 * 119.99610 * 0.02562 * 22 21 20 25 25 C 1.52996 * 109.47372 * 184.99895 * 15 14 13 26 26 C 1.52999 * 117.49977 * 248.74287 * 25 15 14 27 27 C 1.53001 * 117.50112 * 180.08275 * 25 15 14 28 28 H 0.97000 * 120.00320 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46868 * 59.99725 * 10 9 7 30 30 H 1.09002 * 109.46818 * 299.99575 * 10 9 7 31 31 H 0.97000 * 119.99339 * 0.02562 * 13 11 10 32 32 H 1.09007 * 109.47196 * 299.99538 * 14 13 11 33 33 H 1.09006 * 109.47678 * 59.99732 * 14 13 11 34 34 H 0.97003 * 119.99576 * 334.99627 * 17 15 14 35 35 H 1.08998 * 109.47164 * 299.99667 * 20 18 17 36 36 H 1.09001 * 109.47137 * 59.99413 * 20 18 17 37 37 H 0.97006 * 120.00237 * 0.02562 * 21 20 18 38 38 H 0.96993 * 120.00087 * 0.02562 * 23 22 21 39 39 H 0.97000 * 119.99616 * 179.97438 * 23 22 21 40 40 H 1.09003 * 115.55008 * 34.41656 * 25 15 14 41 41 H 1.09001 * 117.50021 * 0.02562 * 26 25 15 42 42 H 1.09005 * 117.49919 * 145.01421 * 26 25 15 43 43 H 1.08998 * 117.50341 * 214.97622 * 27 25 15 44 44 H 1.08994 * 117.49904 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7722 -1.2019 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5731 -3.2324 0.0008 12 8 6.3441 -2.2962 0.0005 13 7 6.0458 -4.4946 0.0011 14 6 7.4907 -4.7356 -0.0050 15 6 7.7565 -6.2423 -0.0039 16 1 7.3876 -6.6771 -0.9329 17 7 7.0663 -6.8591 1.1317 18 6 6.7207 -8.1609 1.0840 19 8 6.9807 -8.8217 0.1008 20 6 6.0101 -8.7951 2.2519 21 7 5.7464 -10.2054 1.9557 22 6 5.1162 -10.9781 2.8624 23 7 4.8740 -12.2756 2.5901 24 8 4.7660 -10.5045 3.9262 25 6 9.2608 -6.4948 0.1154 26 6 9.9778 -7.0794 -1.1032 27 6 9.7338 -7.9498 0.1321 28 1 -0.4850 0.8400 -0.0004 29 1 3.6440 -3.4313 -0.8893 30 1 3.6434 -3.4317 0.8907 31 1 5.4291 -5.2433 0.0011 32 1 7.9296 -4.2903 -0.8980 33 1 7.9378 -4.2867 0.8820 34 1 6.8581 -6.3305 1.9179 35 1 6.6357 -8.7212 3.1415 36 1 5.0666 -8.2784 2.4273 37 1 6.0261 -10.5834 1.1072 38 1 5.1536 -12.6535 1.7417 39 1 4.4207 -12.8318 3.2429 40 1 9.8104 -5.7799 0.7277 41 1 9.3779 -7.2838 -1.9901 42 1 10.9993 -6.7493 -1.2925 43 1 10.5948 -8.1920 0.7550 44 1 8.9733 -8.7271 0.0586 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720724123.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:47 Heat of formation + Delta-G solvation = -79.836200 kcal Electronic energy + Delta-G solvation = -27021.926941 eV Core-core repulsion = 22908.426106 eV Total energy + Delta-G solvation = -4113.500835 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.95268 -40.00246 -39.24749 -37.80639 -35.48471 -34.77672 -33.98974 -33.77125 -32.45946 -30.72912 -28.94803 -27.44510 -25.64034 -23.63759 -22.64884 -21.91886 -21.28775 -20.94604 -20.34174 -19.12350 -18.11741 -17.84264 -17.17162 -16.73052 -16.67484 -16.31113 -16.03485 -15.62503 -15.34599 -15.17590 -14.99003 -14.84669 -14.50040 -14.36829 -13.79315 -13.62062 -13.40483 -13.18838 -12.97569 -12.81939 -12.45737 -12.17522 -11.85414 -11.73089 -11.29231 -11.02868 -10.82932 -10.74358 -10.70540 -10.59096 -10.34880 -10.12975 -9.88640 -9.67470 -9.59057 -9.48947 -9.14523 -9.01759 -8.53776 -6.95038 -6.30825 -4.03154 2.00438 2.13295 2.66754 2.79380 2.80231 2.88395 3.22902 3.31652 3.48299 3.51541 3.60354 4.05196 4.14416 4.19192 4.30931 4.43597 4.66384 4.67318 4.75045 4.86116 4.87315 4.91750 5.05370 5.08202 5.21235 5.35452 5.38359 5.59466 5.59760 5.70932 5.79719 5.84144 5.86636 5.96209 6.00198 6.24773 6.35876 6.49132 6.90480 7.46122 7.49944 7.61263 7.92127 8.19115 8.37598 8.39849 9.15129 10.78398 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.010658 B = 0.002331 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.566981 B =12007.239712 C =14272.220162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.739 5.739 14 C 0.117 3.883 15 C 0.167 3.833 16 H 0.099 0.901 17 N -0.717 5.717 18 C 0.515 3.485 19 O -0.535 6.535 20 C 0.117 3.883 21 N -0.734 5.734 22 C 0.709 3.291 23 N -0.865 5.865 24 O -0.594 6.594 25 C -0.171 4.171 26 C -0.167 4.167 27 C -0.179 4.179 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.400 0.600 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.408 0.592 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.408 0.592 38 H 0.398 0.602 39 H 0.416 0.584 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.949 -24.234 1.684 30.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.276 4.276 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.394 5.394 14 C -0.007 4.007 15 C 0.062 3.938 16 H 0.117 0.883 17 N -0.368 5.368 18 C 0.301 3.699 19 O -0.412 6.412 20 C -0.011 4.011 21 N -0.394 5.394 22 C 0.406 3.594 23 N -0.433 5.433 24 O -0.472 6.472 25 C -0.191 4.191 26 C -0.205 4.205 27 C -0.216 4.216 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.234 0.766 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.243 0.757 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.245 0.755 38 H 0.226 0.774 39 H 0.249 0.751 40 H 0.128 0.872 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.106 0.894 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 19.019 -22.443 1.830 29.474 hybrid contribution -1.060 -0.970 -0.189 1.449 sum 17.959 -23.413 1.641 29.553 Atomic orbital electron populations 1.69937 1.05921 1.27802 1.47961 1.24720 0.94459 0.98988 0.93175 0.86730 0.81869 0.83279 0.79931 1.19209 1.19926 1.15931 1.22306 0.88218 0.97546 1.58885 0.89374 1.84789 1.09362 0.99857 1.97433 1.23280 0.93846 1.04559 1.05865 1.20297 0.90660 0.82116 0.75132 1.90714 1.58755 1.42136 1.47460 1.45950 1.07076 1.08269 1.78102 1.21547 0.82262 0.93044 1.03896 1.20830 0.90294 0.92299 0.90336 0.88321 1.45990 1.59494 1.10549 1.20814 1.20498 0.78538 0.82302 0.88525 1.90644 1.54841 1.62076 1.33656 1.20899 1.01908 0.82029 0.96277 1.44667 1.63796 1.09906 1.21033 1.15839 0.78503 0.81490 0.83539 1.42925 1.66702 1.10120 1.23581 1.91007 1.58099 1.73407 1.24646 1.22564 0.94481 0.98204 1.03858 1.22954 1.01323 1.03734 0.92464 1.23265 1.03671 0.93769 1.00930 0.91909 0.88491 0.88399 0.76595 0.89651 0.90633 0.75659 0.88184 0.87984 0.75458 0.77382 0.75123 0.87236 0.88525 0.88684 0.89360 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.40 13.97 55.49 0.78 -25.63 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.58 27.74 -169.99 -4.72 16.86 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 7 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.48 18.55 -107.50 -1.99 -5.48 16 10 C -0.12 -2.30 6.16 36.00 0.22 -2.08 16 11 C 0.53 8.66 7.85 -10.98 -0.09 8.58 16 12 O -0.52 -10.42 15.86 5.56 0.09 -10.34 16 13 N -0.74 -8.00 5.39 -60.29 -0.32 -8.32 16 14 C 0.12 1.04 5.21 -4.04 -0.02 1.02 16 15 C 0.17 1.17 2.43 -67.93 -0.17 1.01 16 16 H 0.10 0.82 7.34 -51.93 -0.38 0.43 16 17 N -0.72 -4.18 4.50 -53.80 -0.24 -4.42 16 18 C 0.52 3.55 7.23 -10.98 -0.08 3.47 16 19 O -0.53 -4.90 12.69 5.56 0.07 -4.83 16 20 C 0.12 0.76 6.15 -5.19 -0.03 0.73 16 21 N -0.73 -5.11 5.53 -66.41 -0.37 -5.48 16 22 C 0.71 6.22 8.84 -86.92 -0.77 5.45 16 23 N -0.87 -4.08 8.88 27.63 0.25 -3.83 16 24 O -0.59 -7.88 17.18 5.29 0.09 -7.79 16 25 C -0.17 -1.17 5.36 -90.62 -0.49 -1.65 16 26 C -0.17 -1.16 10.18 -26.69 -0.27 -1.43 16 27 C -0.18 -1.32 9.74 -26.69 -0.26 -1.58 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.10 1.68 8.14 -51.92 -0.42 1.25 16 30 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16 31 H 0.40 3.51 8.14 -40.82 -0.33 3.18 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.41 1.86 8.60 -40.82 -0.35 1.51 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.41 2.42 7.45 -40.82 -0.30 2.11 16 38 H 0.40 0.77 8.84 -40.82 -0.36 0.40 16 39 H 0.42 1.60 8.93 -40.82 -0.36 1.24 16 40 H 0.11 0.70 8.11 -51.93 -0.42 0.28 16 41 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.12 1.02 5.02 -51.93 -0.26 0.76 16 LS Contribution 387.89 15.07 5.85 5.85 Total: -1.00 -37.81 387.89 -8.41 -46.22 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.15 Total: 5.52 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.73 Total: 1.66 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.09 Total: -47.68 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.25 Total: -22.95 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.72 Total: 16.86 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.81 -8.41 -46.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720724123.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.616 kcal (2) G-P(sol) polarization free energy of solvation -37.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds