Wall clock time and date at job start Wed Apr 1 2020 03:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 119.99625 * 2 1 4 4 H 1.48501 * 109.46977 * 269.99548 * 3 2 1 5 5 H 1.48499 * 109.47666 * 29.99683 * 3 2 1 6 6 H 1.48501 * 109.47086 * 150.00066 * 3 2 1 7 7 C 1.38797 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99945 * 359.97438 * 7 2 1 9 9 S 1.76192 * 119.99747 * 180.02562 * 7 2 1 10 10 C 1.81005 * 100.00090 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47244 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00363 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99864 * 179.72721 * 13 11 10 15 15 C 1.53001 * 109.47084 * 180.02562 * 14 13 11 16 16 H 1.09000 * 109.47367 * 64.99307 * 15 14 13 17 17 N 1.46505 * 109.46951 * 304.99803 * 15 14 13 18 18 C 1.34773 * 120.00181 * 155.00373 * 17 15 14 19 19 O 1.21277 * 120.00007 * 359.97438 * 18 17 15 20 20 C 1.50704 * 119.99883 * 180.02562 * 18 17 15 21 21 N 1.46499 * 109.46913 * 179.97438 * 20 18 17 22 22 C 1.34778 * 120.00181 * 179.97438 * 21 20 18 23 23 N 1.34776 * 120.00073 * 180.02562 * 22 21 20 24 24 O 1.21588 * 119.99610 * 0.02562 * 22 21 20 25 25 C 1.52996 * 109.47372 * 184.99895 * 15 14 13 26 26 C 1.52999 * 117.49977 * 248.74287 * 25 15 14 27 27 C 1.53001 * 117.50112 * 180.08275 * 25 15 14 28 28 H 0.97000 * 120.00320 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46868 * 59.99725 * 10 9 7 30 30 H 1.09002 * 109.46818 * 299.99575 * 10 9 7 31 31 H 0.97000 * 119.99339 * 0.02562 * 13 11 10 32 32 H 1.09007 * 109.47196 * 299.99538 * 14 13 11 33 33 H 1.09006 * 109.47678 * 59.99732 * 14 13 11 34 34 H 0.97003 * 119.99576 * 334.99627 * 17 15 14 35 35 H 1.08998 * 109.47164 * 299.99667 * 20 18 17 36 36 H 1.09001 * 109.47137 * 59.99413 * 20 18 17 37 37 H 0.97006 * 120.00237 * 0.02562 * 21 20 18 38 38 H 0.96993 * 120.00087 * 0.02562 * 23 22 21 39 39 H 0.97000 * 119.99616 * 179.97438 * 23 22 21 40 40 H 1.09003 * 115.55008 * 34.41656 * 25 15 14 41 41 H 1.09001 * 117.50021 * 0.02562 * 26 25 15 42 42 H 1.09005 * 117.49919 * 145.01421 * 26 25 15 43 43 H 1.08998 * 117.50341 * 214.97622 * 27 25 15 44 44 H 1.08994 * 117.49904 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7722 -1.2019 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5731 -3.2324 0.0008 12 8 6.3441 -2.2962 0.0005 13 7 6.0458 -4.4946 0.0011 14 6 7.4907 -4.7356 -0.0050 15 6 7.7565 -6.2423 -0.0039 16 1 7.3876 -6.6771 -0.9329 17 7 7.0663 -6.8591 1.1317 18 6 6.7207 -8.1609 1.0840 19 8 6.9807 -8.8217 0.1008 20 6 6.0101 -8.7951 2.2519 21 7 5.7464 -10.2054 1.9557 22 6 5.1162 -10.9781 2.8624 23 7 4.8740 -12.2756 2.5901 24 8 4.7660 -10.5045 3.9262 25 6 9.2608 -6.4948 0.1154 26 6 9.9778 -7.0794 -1.1032 27 6 9.7338 -7.9498 0.1321 28 1 -0.4850 0.8400 -0.0004 29 1 3.6440 -3.4313 -0.8893 30 1 3.6434 -3.4317 0.8907 31 1 5.4291 -5.2433 0.0011 32 1 7.9296 -4.2903 -0.8980 33 1 7.9378 -4.2867 0.8820 34 1 6.8581 -6.3305 1.9179 35 1 6.6357 -8.7212 3.1415 36 1 5.0666 -8.2784 2.4273 37 1 6.0261 -10.5834 1.1072 38 1 5.1536 -12.6535 1.7417 39 1 4.4207 -12.8318 3.2429 40 1 9.8104 -5.7799 0.7277 41 1 9.3779 -7.2838 -1.9901 42 1 10.9993 -6.7493 -1.2925 43 1 10.5948 -8.1920 0.7550 44 1 8.9733 -8.7271 0.0586 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720724123.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:46 Heat of formation + Delta-G solvation = -112.801935 kcal Electronic energy + Delta-G solvation = -27023.356443 eV Core-core repulsion = 22908.426106 eV Total energy + Delta-G solvation = -4114.930336 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.135 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.59137 -40.79813 -40.32006 -38.46717 -36.29747 -35.45691 -34.72764 -34.65381 -34.43666 -31.81826 -29.96238 -28.16097 -27.81372 -24.42574 -23.20591 -22.54337 -21.99886 -21.68436 -21.26156 -19.96922 -19.63468 -18.55668 -17.98103 -17.68975 -17.53873 -17.11937 -17.08433 -16.81694 -16.59198 -16.17828 -15.89912 -15.66749 -15.49015 -15.26159 -15.04368 -14.85409 -14.53076 -14.29278 -14.10365 -13.61345 -13.41368 -13.32278 -13.06533 -13.00000 -12.68741 -12.61814 -12.28372 -11.86420 -11.57881 -11.37683 -11.25019 -11.16514 -11.01569 -10.91888 -10.75292 -10.52851 -10.20787 -10.17237 -10.04716 -8.98357 -8.50932 -6.21508 0.99688 1.32307 1.43697 1.47225 1.54415 1.55845 1.60273 2.13344 2.14839 2.25306 2.30057 2.71798 2.87443 2.95915 3.49914 3.56742 3.69252 3.76656 3.93694 4.07571 4.16174 4.22449 4.26245 4.36496 4.40997 4.46443 4.48766 4.64845 4.84348 4.85583 5.05193 5.25007 5.25661 5.29531 5.34071 5.43329 5.71171 5.82471 6.02815 6.12290 6.37656 6.40694 6.94263 7.00584 7.07672 7.16040 7.61094 8.61499 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.010658 B = 0.002331 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.566981 B =12007.239712 C =14272.220162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.043 3.957 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.261 1.261 6 H -0.235 1.235 7 C -0.529 4.529 8 H 0.061 0.939 9 S -0.173 6.173 10 C -0.114 4.114 11 C 0.539 3.461 12 O -0.558 6.558 13 N -0.712 5.712 14 C 0.120 3.880 15 C 0.180 3.820 16 H 0.091 0.909 17 N -0.708 5.708 18 C 0.522 3.478 19 O -0.555 6.555 20 C 0.117 3.883 21 N -0.727 5.727 22 C 0.703 3.297 23 N -0.847 5.847 24 O -0.643 6.643 25 C -0.168 4.168 26 C -0.168 4.168 27 C -0.181 4.181 28 H 0.277 0.723 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.413 0.587 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.417 0.583 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.414 0.586 38 H 0.414 0.586 39 H 0.422 0.578 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.620 -25.074 1.634 31.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.162 4.162 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.158 1.158 7 C -0.676 4.676 8 H 0.079 0.921 9 S 0.054 5.946 10 C -0.265 4.265 11 C 0.325 3.675 12 O -0.436 6.436 13 N -0.366 5.366 14 C -0.004 4.004 15 C 0.075 3.925 16 H 0.109 0.891 17 N -0.361 5.361 18 C 0.309 3.691 19 O -0.434 6.434 20 C -0.011 4.011 21 N -0.387 5.387 22 C 0.400 3.600 23 N -0.416 5.416 24 O -0.525 6.525 25 C -0.188 4.188 26 C -0.206 4.206 27 C -0.218 4.218 28 H 0.086 0.914 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.250 0.750 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.254 0.746 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.253 0.747 38 H 0.244 0.756 39 H 0.255 0.745 40 H 0.137 0.863 41 H 0.110 0.890 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 20.697 -23.362 1.752 31.260 hybrid contribution -1.540 -0.930 -0.209 1.811 sum 19.158 -24.292 1.542 30.975 Atomic orbital electron populations 1.70021 1.07376 1.29020 1.49212 1.25594 0.95282 1.02363 0.92938 0.85850 0.80720 0.79504 0.80193 1.18739 1.18503 1.15832 1.22470 0.90413 0.96612 1.58143 0.92050 1.84679 1.06208 1.06149 1.97579 1.23285 0.96137 0.99634 1.07429 1.19849 0.89226 0.83249 0.75218 1.90709 1.59175 1.43720 1.49952 1.45673 1.08475 1.06765 1.75708 1.21652 0.80401 0.94264 1.04056 1.20620 0.90731 0.90800 0.90384 0.89093 1.45884 1.59042 1.10329 1.20822 1.20484 0.78134 0.82311 0.88172 1.90647 1.55720 1.62609 1.34455 1.20938 1.02075 0.81839 0.96274 1.44608 1.63196 1.10017 1.20896 1.16067 0.78414 0.82438 0.83071 1.42776 1.65667 1.08824 1.24361 1.90971 1.60218 1.74586 1.26678 1.22564 0.94110 0.98133 1.03976 1.23011 1.01831 1.03515 0.92226 1.23206 1.03609 0.93557 1.01427 0.91402 0.87159 0.86680 0.75006 0.90016 0.90046 0.74611 0.87509 0.87809 0.74736 0.75566 0.74482 0.86349 0.88977 0.87728 0.88715 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.72 13.97 21.65 0.30 -55.42 16 2 C 0.04 2.53 5.50 84.86 0.47 3.00 16 3 Si 0.92 44.51 27.74 68.60 1.90 46.41 16 4 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.23 -11.29 6.74 99.48 0.67 -10.62 16 7 C -0.53 -30.34 10.04 67.95 0.68 -29.66 16 8 H 0.06 3.72 8.03 -2.91 -0.02 3.70 16 9 S -0.17 -8.45 18.55 -56.49 -1.05 -9.50 16 10 C -0.11 -4.02 6.16 71.23 0.44 -3.58 16 11 C 0.54 16.54 7.85 87.65 0.69 17.23 16 12 O -0.56 -21.75 15.86 -3.04 -0.05 -21.80 16 13 N -0.71 -13.66 5.39 -463.05 -2.49 -16.16 16 14 C 0.12 1.85 5.21 86.38 0.45 2.30 16 15 C 0.18 2.12 2.43 44.99 0.11 2.23 16 16 H 0.09 1.31 7.34 -2.39 -0.02 1.29 16 17 N -0.71 -6.70 4.50 -442.53 -1.99 -8.69 16 18 C 0.52 6.28 7.23 87.66 0.63 6.91 16 19 O -0.56 -9.32 12.69 -3.02 -0.04 -9.36 16 20 C 0.12 1.36 6.15 85.63 0.53 1.89 16 21 N -0.73 -9.25 5.53 -482.29 -2.67 -11.92 16 22 C 0.70 11.72 8.84 179.05 1.58 13.30 16 23 N -0.85 -6.88 8.88 -184.75 -1.64 -8.52 16 24 O -0.64 -16.91 17.18 -3.99 -0.07 -16.98 16 25 C -0.17 -1.92 5.36 -10.79 -0.06 -1.98 16 26 C -0.17 -2.03 10.18 30.62 0.31 -1.71 16 27 C -0.18 -2.33 9.74 30.62 0.30 -2.03 16 28 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 30 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 31 H 0.41 6.05 8.14 -92.71 -0.75 5.29 16 32 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.42 2.73 8.60 -92.71 -0.80 1.93 16 35 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.41 4.31 7.45 -92.70 -0.69 3.62 16 38 H 0.41 0.86 8.84 -92.71 -0.82 0.04 16 39 H 0.42 2.75 8.93 -92.71 -0.83 1.92 16 40 H 0.12 1.20 8.11 -2.39 -0.02 1.18 16 41 H 0.09 1.20 8.05 -2.39 -0.02 1.18 16 42 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.10 1.67 5.02 -2.39 -0.01 1.66 16 Total: -1.00 -82.25 387.89 -4.49 -86.74 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -2.82 Total: 17.31 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 6.13 Total: 7.89 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -8.49 Total: -100.71 kcal Atomic # 8 Polarization: -47.98 SS G_CDS: -0.16 Total: -48.13 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.90 Total: 46.41 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.05 Total: -9.50 kcal Total: -82.25 -4.49 -86.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720724123.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.061 kcal (2) G-P(sol) polarization free energy of solvation -82.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds