Wall clock time and date at job start Wed Apr 1 2020 02:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00381 * 2 1 4 4 C 1.53000 * 109.46840 * 90.00024 * 3 2 1 5 5 N 1.46499 * 109.46840 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 3 7 7 O 1.21278 * 120.00071 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99944 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47084 * 180.02562 * 8 6 5 10 10 H 1.09007 * 110.76840 * 305.69920 * 9 8 6 11 11 C 1.54573 * 110.87001 * 69.22024 * 9 8 6 12 12 O 1.46156 * 104.28438 * 144.85749 * 11 9 8 13 13 C 1.34058 * 110.03400 * 329.67793 * 12 11 9 14 14 O 1.20822 * 125.09627 * 200.68508 * 13 12 11 15 15 C 1.51324 * 109.81145 * 20.67795 * 13 12 11 16 16 C 1.34781 * 119.99832 * 180.02562 * 2 1 3 17 17 O 1.21281 * 120.00142 * 180.02562 * 16 2 1 18 18 C 1.50703 * 120.00021 * 359.97438 * 16 2 1 19 19 S 1.80999 * 109.47324 * 180.02562 * 18 16 2 20 20 C 1.76197 * 100.00030 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00038 * 0.02562 * 20 19 18 22 22 C 1.38796 * 119.99974 * 179.97438 * 20 19 18 23 23 N 1.31635 * 119.99810 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00042 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47146 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47098 * 120.00476 * 24 22 20 27 27 H 1.48504 * 109.47164 * 239.99866 * 24 22 20 28 28 H 1.08996 * 109.47253 * 89.99251 * 1 2 3 29 29 H 1.08999 * 109.47380 * 210.00276 * 1 2 3 30 30 H 1.09001 * 109.46721 * 329.99669 * 1 2 3 31 31 H 1.09001 * 109.46813 * 330.00298 * 3 2 1 32 32 H 1.08992 * 109.47397 * 210.00360 * 3 2 1 33 33 H 1.09002 * 109.47398 * 300.00326 * 4 3 2 34 34 H 1.09001 * 109.47194 * 60.00507 * 4 3 2 35 35 H 0.97000 * 120.00420 * 0.02562 * 5 4 3 36 36 H 1.09002 * 109.47152 * 300.00160 * 8 6 5 37 37 H 1.09001 * 109.46980 * 60.00059 * 8 6 5 38 38 H 1.08989 * 110.44241 * 263.75247 * 11 9 8 39 39 H 1.09004 * 110.43470 * 26.27989 * 11 9 8 40 40 H 1.08999 * 110.37282 * 238.85140 * 15 13 12 41 41 H 1.09003 * 110.37027 * 116.51989 * 15 13 12 42 42 H 1.08997 * 109.47209 * 300.00559 * 18 16 2 43 43 H 1.09001 * 109.47189 * 59.99732 * 18 16 2 44 44 H 0.97002 * 119.99530 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 7 3.1857 2.9786 1.4425 6 6 3.5233 3.5619 2.6098 7 8 3.2197 3.0369 3.6601 8 6 4.2769 4.8669 2.6098 9 6 4.5331 5.3078 4.0523 10 1 3.6008 5.3475 4.6157 11 6 5.5533 4.3728 4.7409 12 8 6.3171 5.2568 5.6191 13 6 6.3767 6.4880 5.0923 14 8 7.2005 7.3255 5.3749 15 6 5.2576 6.6719 4.0904 16 6 2.1389 -1.1673 -0.0005 17 8 3.3517 -1.1673 -0.0001 18 6 1.3854 -2.4724 -0.0005 19 16 2.5615 -3.8482 -0.0005 20 6 1.4413 -5.2082 0.0003 21 1 0.3761 -5.0305 0.0001 22 6 1.9280 -6.5081 -0.0001 23 7 3.2264 -6.7247 -0.0004 24 14 0.7404 -7.9500 0.0015 25 1 -0.6550 -7.4421 0.0023 26 1 0.9649 -8.7774 -1.2111 27 1 0.9675 -8.7770 1.2139 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6085 2.0283 -0.5138 32 1 3.1499 1.1383 -0.5138 33 1 1.5002 1.8406 1.9564 34 1 3.0417 0.9506 1.9563 35 1 3.4282 3.3987 0.6025 36 1 5.2291 4.7366 2.0955 37 1 3.6876 5.6268 2.0964 38 1 5.0373 3.6074 5.3205 39 1 6.2090 3.9139 4.0008 40 1 5.6636 6.9133 3.1081 41 1 4.5755 7.4545 4.4227 42 1 0.7590 -2.5303 0.8896 43 1 0.7583 -2.5299 -0.8903 44 1 3.5665 -7.6332 -0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721072826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:19 Heat of formation + Delta-G solvation = -184.711974 kcal Electronic energy + Delta-G solvation = -26501.072016 eV Core-core repulsion = 22350.730676 eV Total energy + Delta-G solvation = -4150.341341 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.08064 -41.02611 -40.48815 -38.61592 -37.16757 -35.64698 -35.21927 -34.58991 -32.05055 -30.35276 -29.30694 -28.13145 -27.70019 -27.16247 -24.21637 -22.60916 -22.29982 -21.38025 -20.55605 -19.54572 -18.64676 -18.11216 -17.93914 -17.62418 -17.43553 -17.20130 -16.89896 -16.84369 -16.56262 -16.28608 -15.75005 -15.40506 -15.10309 -14.81480 -14.60637 -14.50217 -14.36423 -14.24540 -14.08681 -13.56397 -13.42185 -13.22258 -13.15539 -13.04490 -12.92361 -12.87696 -12.62589 -12.36011 -12.29413 -12.19259 -11.70251 -11.56495 -11.36738 -11.16394 -11.01136 -10.83103 -10.26836 -10.12431 -9.77464 -8.67784 -8.35488 -6.13569 0.97887 1.24595 1.41128 1.44521 1.52972 1.56897 1.66787 1.91156 2.26095 2.26530 2.43029 2.96740 2.99021 3.24994 3.28018 3.60760 3.69592 3.72728 3.86800 4.05109 4.06089 4.21584 4.29566 4.33811 4.41319 4.45068 4.48819 4.55236 4.66150 4.70407 4.74243 4.78825 4.86189 4.94241 4.99247 5.10828 5.35097 5.41617 5.57293 5.74110 6.18945 6.21681 6.36605 6.56612 7.06153 7.11213 7.29133 8.73949 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.020097 B = 0.001662 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.937540 B =16838.499809 C =17708.179965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.610 5.610 3 C 0.111 3.889 4 C 0.112 3.888 5 N -0.714 5.714 6 C 0.504 3.496 7 O -0.585 6.585 8 C -0.122 4.122 9 C -0.099 4.099 10 H 0.104 0.896 11 C 0.055 3.945 12 O -0.377 6.377 13 C 0.476 3.524 14 O -0.509 6.509 15 C -0.163 4.163 16 C 0.530 3.470 17 O -0.561 6.561 18 C -0.125 4.125 19 S -0.155 6.155 20 C -0.545 4.545 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.255 1.255 26 H -0.274 1.274 27 H -0.276 1.276 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.130 0.870 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.028 0.972 35 H 0.421 0.579 36 H 0.127 0.873 37 H 0.148 0.852 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.147 0.853 41 H 0.139 0.861 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.051 29.559 -0.713 30.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C -0.013 4.013 4 C -0.014 4.014 5 N -0.367 5.367 6 C 0.292 3.708 7 O -0.465 6.465 8 C -0.161 4.161 9 C -0.118 4.118 10 H 0.123 0.877 11 C -0.019 4.019 12 O -0.294 6.294 13 C 0.319 3.681 14 O -0.397 6.397 15 C -0.201 4.201 16 C 0.318 3.682 17 O -0.439 6.439 18 C -0.276 4.276 19 S 0.072 5.928 20 C -0.692 4.692 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.179 1.179 26 H -0.199 1.199 27 H -0.201 1.201 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.148 0.852 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.259 0.741 36 H 0.145 0.855 37 H 0.166 0.834 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.165 0.835 41 H 0.157 0.843 42 H 0.124 0.876 43 H 0.128 0.872 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.909 29.377 0.330 29.787 hybrid contribution -1.443 -1.350 -0.022 1.976 sum -6.352 28.027 0.309 28.740 Atomic orbital electron populations 1.22148 0.76511 1.04809 1.03734 1.47730 1.08645 1.04414 1.73597 1.21648 0.99022 0.85312 0.95270 1.21476 0.96503 0.85494 0.97924 1.45717 1.58020 1.23245 1.09758 1.21376 0.78964 0.87477 0.82980 1.90746 1.56277 1.66577 1.32875 1.21783 1.03488 0.94114 0.96696 1.22227 0.99587 0.92771 0.97214 0.87734 1.24534 0.92454 0.91907 0.92978 1.87060 1.70637 1.23386 1.48295 1.23925 0.84255 0.80424 0.79465 1.90694 1.41105 1.45193 1.62694 1.22978 0.95958 0.99656 1.01479 1.20167 0.87292 0.85619 0.75136 1.90687 1.15613 1.87464 1.50168 1.23389 1.02749 0.95051 1.06440 1.85581 1.12740 0.97434 1.97029 1.23230 0.94652 0.92623 1.58731 0.89834 1.26131 0.97577 1.01721 0.93752 1.70194 1.14117 1.22405 1.48095 0.84906 0.78251 0.76763 0.78034 1.17882 1.19895 1.20105 0.90436 0.91062 0.87959 0.85244 0.90578 0.91046 0.95319 0.74128 0.85517 0.83404 0.87584 0.88669 0.83514 0.84341 0.87572 0.87206 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 10.24 127.77 1.31 2.26 16 2 N -0.61 -13.56 2.87 -846.75 -2.43 -15.99 16 3 C 0.11 1.74 5.52 86.38 0.48 2.22 16 4 C 0.11 1.99 6.00 86.38 0.52 2.51 16 5 N -0.71 -7.45 5.56 -463.05 -2.57 -10.03 16 6 C 0.50 6.34 7.64 87.66 0.67 7.01 16 7 O -0.58 -13.45 14.96 -3.02 -0.05 -13.49 16 8 C -0.12 -0.27 5.00 29.85 0.15 -0.12 16 9 C -0.10 -0.67 2.75 -9.75 -0.03 -0.70 16 10 H 0.10 0.87 7.97 -2.38 -0.02 0.85 16 11 C 0.05 0.75 6.67 72.52 0.48 1.23 16 12 O -0.38 -7.56 11.06 -50.10 -0.55 -8.11 16 13 C 0.48 8.41 8.58 71.43 0.61 9.02 16 14 O -0.51 -13.30 18.00 21.65 0.39 -12.91 16 15 C -0.16 -0.84 6.52 30.56 0.20 -0.64 16 16 C 0.53 18.62 7.69 87.66 0.67 19.29 16 17 O -0.56 -24.84 15.44 -3.03 -0.05 -24.89 16 18 C -0.13 -4.82 4.71 71.24 0.34 -4.48 16 19 S -0.16 -8.52 20.57 -56.49 -1.16 -9.68 16 20 C -0.54 -30.75 9.50 67.95 0.65 -30.10 16 21 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 22 C 0.01 0.73 5.49 84.86 0.47 1.19 16 23 N -0.91 -55.76 13.22 21.65 0.29 -55.47 16 24 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 25 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 1.11 6.44 -2.39 -0.02 1.10 16 30 H 0.10 0.78 8.07 -2.39 -0.02 0.76 16 31 H 0.13 0.83 8.07 -2.39 -0.02 0.81 16 32 H 0.08 1.49 7.42 -2.39 -0.02 1.47 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.42 1.08 8.47 -92.71 -0.79 0.29 16 36 H 0.13 -0.22 8.01 -2.39 -0.02 -0.24 16 37 H 0.15 -0.75 8.14 -2.39 -0.02 -0.77 16 38 H 0.11 1.81 7.68 -2.39 -0.02 1.79 16 39 H 0.10 1.07 7.82 -2.38 -0.02 1.05 16 40 H 0.15 -0.09 7.80 -2.39 -0.02 -0.10 16 41 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.11 3.73 7.40 -2.40 -0.02 3.71 16 43 H 0.11 3.76 8.11 -2.39 -0.02 3.75 16 44 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -94.11 388.95 2.64 -91.46 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 0.24 Total: 5.21 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 6.51 Total: 8.70 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -4.72 Total: -81.49 kcal Atomic # 8 Polarization: -59.14 SS G_CDS: -0.26 Total: -59.40 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -94.11 2.64 -91.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721072826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.249 kcal (2) G-P(sol) polarization free energy of solvation -94.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds