Wall clock time and date at job start Wed Apr 1 2020 02:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00006 * 2 1 4 4 C 1.53001 * 109.47360 * 269.99879 * 3 2 1 5 5 N 1.46900 * 109.47174 * 179.97438 * 4 3 2 6 6 C 1.46894 * 111.00025 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47384 * 179.97438 * 6 5 4 8 8 C 1.38224 * 119.99213 * 260.02567 * 7 6 5 9 9 C 1.38187 * 120.05295 * 179.97438 * 8 7 6 10 10 C 1.38492 * 120.02416 * 0.02562 * 9 8 7 11 11 F 1.35099 * 120.00943 * 179.97438 * 10 9 8 12 12 C 1.38397 * 119.97529 * 359.72914 * 10 9 8 13 13 C 1.38445 * 119.94721 * 0.52975 * 12 10 9 14 14 F 1.35104 * 120.01039 * 179.74070 * 13 12 10 15 15 C 1.34776 * 119.99957 * 180.02562 * 2 1 3 16 16 O 1.21283 * 119.99936 * 179.97438 * 15 2 1 17 17 C 1.50705 * 120.00036 * 359.97438 * 15 2 1 18 18 S 1.80997 * 109.46902 * 179.97438 * 17 15 2 19 19 C 1.76201 * 99.99773 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00014 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00064 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99723 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99987 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47103 * 59.99951 * 23 21 19 25 25 H 1.48501 * 109.47323 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47272 * 300.00034 * 23 21 19 27 27 H 1.08992 * 109.47195 * 89.99534 * 1 2 3 28 28 H 1.09005 * 109.47078 * 209.99812 * 1 2 3 29 29 H 1.08999 * 109.46558 * 329.99426 * 1 2 3 30 30 H 1.09006 * 109.46905 * 150.00312 * 3 2 1 31 31 H 1.08997 * 109.47326 * 30.00882 * 3 2 1 32 32 H 1.09006 * 109.46758 * 60.00343 * 4 3 2 33 33 H 1.08992 * 109.47397 * 300.00121 * 4 3 2 34 34 H 1.00905 * 110.99897 * 56.05125 * 5 4 3 35 35 H 1.09004 * 109.47067 * 59.99889 * 6 5 4 36 36 H 1.09004 * 109.47385 * 300.00243 * 6 5 4 37 37 H 1.08009 * 119.97191 * 359.97414 * 8 7 6 38 38 H 1.07999 * 119.98601 * 180.02562 * 9 8 7 39 39 H 1.07999 * 120.03007 * 180.27174 * 12 10 9 40 40 H 1.08998 * 109.47260 * 300.00292 * 17 15 2 41 41 H 1.09002 * 109.46681 * 60.00080 * 17 15 2 42 42 H 0.97010 * 119.99526 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1865 2.9829 -1.4424 6 6 3.4492 3.4392 -2.8138 7 6 4.2014 4.7444 -2.7736 8 6 3.5274 5.9364 -2.9623 9 6 4.2157 7.1340 -2.9252 10 6 5.5821 7.1412 -2.6993 11 9 6.2549 8.3123 -2.6636 12 6 6.2572 5.9488 -2.5052 13 6 5.5674 4.7492 -2.5479 14 9 6.2260 3.5840 -2.3638 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0010 17 6 1.3853 -2.4723 -0.0005 18 16 2.5616 -3.8480 -0.0020 19 6 1.4415 -5.2082 -0.0026 20 1 0.3762 -5.0305 -0.0016 21 6 1.9282 -6.5081 -0.0032 22 7 3.2265 -6.7246 -0.0039 23 14 0.7407 -7.9501 -0.0030 24 1 -0.1150 -7.8868 -1.2151 25 1 1.5068 -9.2222 -0.0044 26 1 -0.1137 -7.8875 1.2099 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5139 30 1 3.1500 1.1383 0.5138 31 1 1.6085 2.0283 0.5139 32 1 1.5001 1.8408 -1.9563 33 1 3.0416 0.9509 -1.9563 34 1 4.0440 2.9057 -0.9162 35 1 2.5035 3.5812 -3.3369 36 1 4.0454 2.6918 -3.3375 37 1 2.4618 5.9316 -3.1389 38 1 3.6880 8.0647 -3.0724 39 1 7.3219 5.9537 -2.3246 40 1 0.7590 -2.5303 0.8896 41 1 0.7584 -2.5298 -0.8903 42 1 3.5667 -7.6331 -0.0047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731892809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:00 Heat of formation + Delta-G solvation = -97.311368 kcal Electronic energy + Delta-G solvation = -25973.502014 eV Core-core repulsion = 21715.863133 eV Total energy + Delta-G solvation = -4257.638881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.111 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.44360 -49.39556 -39.62875 -39.39627 -36.70476 -35.14170 -32.43736 -32.22198 -31.27047 -30.00227 -28.09505 -26.47460 -25.52567 -24.83694 -23.69603 -22.40952 -21.98873 -19.21659 -18.63670 -17.73461 -17.66514 -16.82502 -16.62131 -16.41870 -16.10915 -16.02835 -15.74455 -15.46487 -15.30181 -14.84875 -14.81369 -14.55809 -14.42081 -13.82826 -13.80616 -13.38213 -13.09436 -12.92519 -12.84229 -12.56468 -12.39364 -12.30986 -12.16694 -12.08687 -11.74077 -11.66512 -11.14754 -11.05229 -11.04542 -10.77107 -9.82536 -9.56195 -9.41294 -9.18316 -9.06767 -8.77912 -8.56117 -8.24128 -6.51346 -6.22288 -3.93193 0.43767 0.53557 2.78391 2.93903 3.02824 3.22652 3.24626 3.28303 3.40231 3.56311 3.93504 4.01903 4.08715 4.19592 4.29101 4.36760 4.61143 4.77977 4.92256 5.05968 5.10406 5.12806 5.14421 5.18482 5.31114 5.35660 5.41367 5.45707 5.48022 5.54942 5.55732 5.67507 5.77140 5.80858 5.86575 5.92324 6.11872 6.26944 6.48332 6.69437 6.99709 7.50005 7.58386 8.34045 8.52983 9.22751 10.85050 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.026554 B = 0.001685 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.189366 B =16615.214366 C =17285.738755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.624 5.624 3 C 0.121 3.879 4 C 0.043 3.957 5 N -0.682 5.682 6 C 0.099 3.901 7 C -0.123 4.123 8 C -0.043 4.043 9 C -0.164 4.164 10 C 0.128 3.872 11 F -0.132 7.132 12 C -0.192 4.192 13 C 0.136 3.864 14 F -0.126 7.126 15 C 0.532 3.468 16 O -0.515 6.515 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.345 0.655 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.149 0.851 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.683 28.907 -5.840 29.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.361 5.361 3 C -0.003 4.003 4 C -0.087 4.087 5 N -0.313 5.313 6 C -0.030 4.030 7 C -0.125 4.125 8 C -0.061 4.061 9 C -0.183 4.183 10 C 0.108 3.892 11 F -0.111 7.111 12 C -0.212 4.212 13 C 0.116 3.884 14 F -0.105 7.105 15 C 0.320 3.680 16 O -0.389 6.389 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.163 0.837 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.166 0.834 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.261 29.120 -5.753 29.710 hybrid contribution -1.222 -1.473 -0.267 1.932 sum -2.483 27.648 -6.021 28.405 Atomic orbital electron populations 1.21784 0.79484 1.03217 1.01736 1.47820 1.06932 1.05550 1.75761 1.21259 0.98458 0.84744 0.95807 1.22357 0.98717 0.89394 0.98281 1.60535 1.27392 1.30618 1.12781 1.20788 0.99393 0.91722 0.91088 1.19938 0.91686 0.97141 1.03714 1.20798 1.00396 0.89719 0.95229 1.21229 0.92388 1.00209 1.04495 1.17323 0.90213 0.80835 1.00798 1.91539 1.80403 1.45440 1.93703 1.21040 1.02187 0.90444 1.07489 1.17233 0.89781 0.81252 1.00111 1.91572 1.80879 1.45775 1.92239 1.20390 0.87960 0.84631 0.75024 1.90697 1.13752 1.86809 1.47629 1.23560 1.04554 0.97219 1.04737 1.85402 1.08069 0.93356 1.96714 1.22819 0.94269 0.92215 1.59120 0.90982 1.24993 0.95677 0.98370 0.94522 1.70012 1.11755 1.21766 1.46725 0.86225 0.80184 0.80298 0.78795 1.19948 1.20803 1.19922 0.92831 0.90608 0.91253 0.89977 0.89965 0.90746 0.94056 0.83733 0.89225 0.93360 0.83669 0.83900 0.83360 0.89198 0.89272 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.29 59.85 0.62 1.42 16 2 N -0.62 -8.55 2.87 -181.57 -0.52 -9.07 16 3 C 0.12 1.42 5.71 -4.04 -0.02 1.40 16 4 C 0.04 0.46 6.01 -3.82 -0.02 0.44 16 5 N -0.68 -6.44 6.49 -115.06 -0.75 -7.19 16 6 C 0.10 0.82 5.53 -4.98 -0.03 0.79 16 7 C -0.12 -0.96 5.40 -104.55 -0.56 -1.52 16 8 C -0.04 -0.25 9.66 -39.60 -0.38 -0.64 16 9 C -0.16 -0.98 10.02 -39.51 -0.40 -1.38 16 10 C 0.13 0.96 7.30 -39.43 -0.29 0.67 16 11 F -0.13 -1.09 17.27 2.25 0.04 -1.05 16 12 C -0.19 -1.51 10.01 -39.45 -0.39 -1.90 16 13 C 0.14 1.20 7.24 -39.43 -0.29 0.91 16 14 F -0.13 -1.33 16.66 2.25 0.04 -1.30 16 15 C 0.53 10.01 7.69 -10.98 -0.08 9.93 16 16 O -0.51 -11.67 15.44 5.55 0.09 -11.58 16 17 C -0.15 -3.03 4.71 36.01 0.17 -2.86 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 23 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 29 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 30 H 0.08 1.12 7.42 -51.93 -0.39 0.74 16 31 H 0.08 0.78 7.89 -51.93 -0.41 0.37 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.34 3.49 8.72 -39.29 -0.34 3.14 16 35 H 0.09 0.61 8.00 -51.93 -0.42 0.19 16 36 H 0.05 0.45 7.94 -51.93 -0.41 0.04 16 37 H 0.15 0.55 8.04 -52.48 -0.42 0.12 16 38 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 39 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.09 1.67 7.40 -51.92 -0.38 1.29 16 41 H 0.09 1.67 8.11 -51.91 -0.42 1.25 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 382.49 15.07 5.76 5.76 Total: -1.00 -34.21 382.49 -8.93 -43.14 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.60 Total: -0.03 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -1.49 Total: -5.67 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: -0.53 Total: -41.67 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.08 Total: -2.34 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.21 -8.93 -43.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731892809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.172 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds