Wall clock time and date at job start Wed Apr 1 2020 03:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86800 * 119.99675 * 2 1 4 4 H 1.48497 * 109.47082 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47072 * 299.99958 * 3 2 1 6 6 H 1.48495 * 109.47150 * 59.99894 * 3 2 1 7 7 C 1.38793 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99818 * 179.97438 * 7 2 1 9 9 S 1.76193 * 120.00468 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00254 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47261 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99936 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00347 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00573 * 179.97438 * 13 11 10 15 15 H 1.09005 * 109.46990 * 325.00265 * 14 13 11 16 16 C 1.52997 * 109.47430 * 204.99724 * 14 13 11 17 17 N 1.46902 * 109.46793 * 55.00025 * 16 14 13 18 18 C 1.46902 * 110.99715 * 179.97438 * 17 16 14 19 19 C 1.50707 * 109.46915 * 180.02562 * 18 17 16 20 20 O 1.21229 * 119.99952 * 359.97438 * 19 18 17 21 21 N 1.34779 * 119.99561 * 180.02562 * 19 18 17 22 22 C 1.34776 * 119.99344 * 179.97438 * 21 19 18 23 23 N 1.34775 * 119.99918 * 180.02562 * 22 21 19 24 24 O 1.21538 * 120.00552 * 0.02562 * 22 21 19 25 25 C 1.53003 * 109.47194 * 84.99642 * 14 13 11 26 26 C 1.53001 * 117.51964 * 231.28709 * 25 14 13 27 27 C 1.52999 * 60.00190 * 107.47982 * 26 25 14 28 28 H 0.97000 * 120.00216 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47253 * 59.99871 * 10 9 7 30 30 H 1.09005 * 109.46687 * 299.99968 * 10 9 7 31 31 H 0.97002 * 119.99812 * 359.97438 * 13 11 10 32 32 H 1.08998 * 109.47132 * 174.99771 * 16 14 13 33 33 H 1.08998 * 109.47469 * 295.00258 * 16 14 13 34 34 H 1.00897 * 111.00281 * 56.04809 * 17 16 14 35 35 H 1.09004 * 109.47373 * 299.99472 * 18 17 16 36 36 H 1.08996 * 109.47349 * 60.00050 * 18 17 16 37 37 H 0.96998 * 120.00137 * 0.02562 * 21 19 18 38 38 H 0.97005 * 119.99888 * 359.97438 * 23 22 21 39 39 H 0.96998 * 120.00682 * 179.97438 * 23 22 21 40 40 H 1.09002 * 115.54973 * 85.58492 * 25 14 13 41 41 H 1.09001 * 117.49733 * 214.97413 * 26 25 14 42 42 H 1.08995 * 117.49577 * 359.97438 * 26 25 14 43 43 H 1.09004 * 117.50150 * 252.51496 * 27 26 25 44 44 H 1.09004 * 117.49681 * 107.48417 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7913 -5.5023 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3307 -7.7150 -0.0008 15 1 1.4146 -7.7601 0.5883 16 6 3.3760 -8.6510 0.6092 17 7 3.7484 -8.1651 1.9445 18 6 4.7523 -9.0416 2.5626 19 6 5.1084 -8.5128 3.9282 20 8 4.5786 -7.5052 4.3450 21 7 6.0165 -9.1595 4.6855 22 6 6.3353 -8.6863 5.9065 23 7 7.2437 -9.3327 6.6636 24 8 5.8035 -7.6767 6.3249 25 6 2.0345 -8.1487 -1.4379 26 6 0.6524 -8.7372 -1.7282 27 6 1.0057 -7.3336 -2.2240 28 1 -0.4850 0.8400 0.0004 29 1 3.1246 -3.7313 0.8894 30 1 3.1246 -3.7312 -0.8906 31 1 3.8011 -6.1835 -0.0004 32 1 2.9607 -9.6555 0.6909 33 1 4.2596 -8.6739 -0.0286 34 1 2.9359 -8.0735 2.5357 35 1 4.3462 -10.0486 2.6579 36 1 5.6455 -9.0676 1.9384 37 1 6.4412 -9.9651 4.3514 38 1 7.6679 -10.1387 6.3299 39 1 7.4735 -8.9920 7.5423 40 1 2.8813 -8.5568 -1.9897 41 1 0.5899 -9.5325 -2.4709 42 1 -0.0461 -8.8159 -0.8951 43 1 0.5395 -6.4886 -1.7172 44 1 1.1757 -7.2055 -3.2931 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733165228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:28 Heat of formation + Delta-G solvation = -67.196120 kcal Electronic energy + Delta-G solvation = -27107.727387 eV Core-core repulsion = 22994.774667 eV Total energy + Delta-G solvation = -4112.952720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.44320 -39.69857 -38.70381 -37.21771 -35.93148 -35.03352 -33.77085 -33.56958 -32.33002 -30.42317 -28.57083 -26.59465 -25.36738 -23.33032 -22.44200 -22.14764 -20.94896 -20.70895 -20.08406 -19.20206 -18.13431 -17.67094 -16.90347 -16.55502 -16.44429 -16.15970 -15.78573 -15.24486 -15.18971 -14.92709 -14.71405 -14.53607 -14.33121 -14.10710 -13.68621 -13.61378 -13.04956 -12.88889 -12.59132 -12.36245 -12.00331 -11.77512 -11.44207 -11.32501 -11.15559 -10.98627 -10.91017 -10.67494 -10.50004 -10.28472 -10.24431 -10.16915 -9.98633 -9.69112 -9.20938 -8.97945 -8.85638 -8.61513 -8.11235 -6.37670 -6.12354 -3.81082 1.75397 2.00533 2.89921 3.13238 3.23802 3.28908 3.34855 3.39704 3.53806 3.73178 3.86453 4.10079 4.15163 4.30196 4.50710 4.67832 4.79910 4.90141 5.03017 5.11154 5.14076 5.22907 5.25684 5.31267 5.42860 5.52876 5.72145 5.72863 5.88216 5.93944 6.06258 6.09235 6.19747 6.28024 6.31958 6.43624 6.58533 6.81326 6.93529 6.99638 7.68123 7.69929 7.94721 7.99680 8.45549 8.81356 9.33419 10.95177 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.008089 B = 0.002683 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3460.493255 B =10432.062444 C =13472.827277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.538 3.462 12 O -0.522 6.522 13 N -0.716 5.716 14 C 0.181 3.819 15 H 0.087 0.913 16 C 0.058 3.942 17 N -0.672 5.672 18 C 0.047 3.953 19 C 0.508 3.492 20 O -0.440 6.440 21 N -0.693 5.693 22 C 0.694 3.306 23 N -0.859 5.859 24 O -0.529 6.529 25 C -0.172 4.172 26 C -0.174 4.174 27 C -0.176 4.176 28 H 0.267 0.733 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.401 0.599 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.358 0.642 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.408 0.592 38 H 0.398 0.602 39 H 0.420 0.580 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.126 0.874 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.420 -29.889 4.031 34.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.137 4.137 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.680 4.680 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.325 3.675 12 O -0.398 6.398 13 N -0.369 5.369 14 C 0.075 3.925 15 H 0.105 0.895 16 C -0.072 4.072 17 N -0.305 5.305 18 C -0.086 4.086 19 C 0.293 3.707 20 O -0.305 6.305 21 N -0.362 5.362 22 C 0.392 3.608 23 N -0.430 5.430 24 O -0.400 6.400 25 C -0.192 4.192 26 C -0.212 4.212 27 C -0.213 4.213 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.235 0.765 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.178 0.822 35 H 0.084 0.916 36 H 0.127 0.873 37 H 0.243 0.757 38 H 0.226 0.774 39 H 0.253 0.747 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.144 0.856 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.809 -28.107 4.274 31.607 hybrid contribution 2.688 -0.328 0.225 2.718 sum 16.497 -28.435 4.498 33.181 Atomic orbital electron populations 1.70035 1.05912 1.27192 1.47302 1.24984 0.95018 0.98983 0.94686 0.86129 0.79648 0.82002 0.77799 1.19624 1.20662 1.20611 1.22921 0.94956 0.91754 1.58363 0.90951 1.85307 1.05149 0.96283 1.96681 1.23514 1.06394 0.95543 1.04846 1.20200 0.86508 0.86249 0.74545 1.90612 1.15467 1.85501 1.48239 1.45807 1.09992 1.04381 1.76689 1.20355 0.96992 0.81717 0.93474 0.89509 1.22251 0.98831 0.96355 0.89743 1.60073 1.16863 1.49478 1.04112 1.21797 0.99228 0.95514 0.92048 1.20895 0.78715 0.84298 0.86812 1.90926 1.47289 1.21279 1.70961 1.44157 1.43782 1.30852 1.17405 1.16179 0.80560 0.83458 0.80600 1.43098 1.45953 1.31904 1.22059 1.91169 1.53650 1.23870 1.71316 1.22616 0.93382 1.06229 0.97017 1.22906 0.97345 0.97384 1.03565 1.23335 1.01958 0.96210 0.99759 0.92357 0.89180 0.89494 0.76506 0.93371 0.90045 0.82209 0.91648 0.87316 0.75700 0.77360 0.74730 0.88127 0.89300 0.88828 0.85638 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.98 13.22 55.49 0.73 -26.25 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 3 Si 0.92 22.27 29.55 -169.99 -5.02 17.24 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.53 -15.74 9.50 30.94 0.29 -15.44 16 8 H 0.07 2.05 7.80 -52.48 -0.41 1.64 16 9 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 10 C -0.15 -3.25 6.16 36.00 0.22 -3.03 16 11 C 0.54 10.23 7.18 -10.99 -0.08 10.15 16 12 O -0.52 -11.59 12.89 5.55 0.07 -11.52 16 13 N -0.72 -9.83 4.78 -53.81 -0.26 -10.08 16 14 C 0.18 2.02 2.51 -67.93 -0.17 1.85 16 15 H 0.09 1.18 7.34 -51.93 -0.38 0.79 16 16 C 0.06 0.42 5.23 -3.82 -0.02 0.40 16 17 N -0.67 -5.92 5.85 -115.05 -0.67 -6.59 16 18 C 0.05 0.26 6.17 -4.97 -0.03 0.22 16 19 C 0.51 4.75 7.81 -10.98 -0.09 4.67 16 20 O -0.44 -7.06 14.60 -18.20 -0.27 -7.33 16 21 N -0.69 -4.03 5.24 -15.78 -0.08 -4.11 16 22 C 0.69 6.24 8.78 -86.92 -0.76 5.48 16 23 N -0.86 -2.97 8.88 27.63 0.25 -2.72 16 24 O -0.53 -8.41 15.58 -18.47 -0.29 -8.70 16 25 C -0.17 -1.85 5.36 -90.61 -0.49 -2.34 16 26 C -0.17 -1.90 10.18 -26.73 -0.27 -2.17 16 27 C -0.18 -2.41 9.73 -26.73 -0.26 -2.67 16 28 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.09 1.87 8.14 -51.92 -0.42 1.45 16 30 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 31 H 0.40 4.78 8.60 -40.82 -0.35 4.43 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.36 3.82 8.43 -39.29 -0.33 3.49 16 35 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 36 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.41 0.14 8.71 -40.82 -0.36 -0.21 16 38 H 0.40 -0.25 8.84 -40.82 -0.36 -0.61 16 39 H 0.42 1.29 8.93 -40.82 -0.36 0.92 16 40 H 0.10 0.90 8.11 -51.93 -0.42 0.47 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 1.06 8.05 -51.93 -0.42 0.65 16 43 H 0.13 2.24 5.02 -51.93 -0.26 1.98 16 44 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 389.86 15.07 5.88 5.88 Total: -1.00 -43.43 389.86 -9.79 -53.22 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.17 Total: 5.71 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -1.75 Total: -0.84 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.03 Total: -49.75 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.48 Total: -27.55 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -43.43 -9.79 -53.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733165228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.974 kcal (2) G-P(sol) polarization free energy of solvation -43.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds