Wall clock time and date at job start Wed Apr 1 2020 03:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86800 * 119.99675 * 2 1 4 4 H 1.48497 * 109.47082 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47072 * 299.99958 * 3 2 1 6 6 H 1.48495 * 109.47150 * 59.99894 * 3 2 1 7 7 C 1.38793 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99818 * 179.97438 * 7 2 1 9 9 S 1.76193 * 120.00468 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00254 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47261 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99936 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00347 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00573 * 179.97438 * 13 11 10 15 15 H 1.09005 * 109.46990 * 325.00265 * 14 13 11 16 16 C 1.52997 * 109.47430 * 204.99724 * 14 13 11 17 17 N 1.46902 * 109.46793 * 55.00025 * 16 14 13 18 18 C 1.46902 * 110.99715 * 179.97438 * 17 16 14 19 19 C 1.50707 * 109.46915 * 180.02562 * 18 17 16 20 20 O 1.21229 * 119.99952 * 359.97438 * 19 18 17 21 21 N 1.34779 * 119.99561 * 180.02562 * 19 18 17 22 22 C 1.34776 * 119.99344 * 179.97438 * 21 19 18 23 23 N 1.34775 * 119.99918 * 180.02562 * 22 21 19 24 24 O 1.21538 * 120.00552 * 0.02562 * 22 21 19 25 25 C 1.53003 * 109.47194 * 84.99642 * 14 13 11 26 26 C 1.53001 * 117.51964 * 231.28709 * 25 14 13 27 27 C 1.52999 * 60.00190 * 107.47982 * 26 25 14 28 28 H 0.97000 * 120.00216 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47253 * 59.99871 * 10 9 7 30 30 H 1.09005 * 109.46687 * 299.99968 * 10 9 7 31 31 H 0.97002 * 119.99812 * 359.97438 * 13 11 10 32 32 H 1.08998 * 109.47132 * 174.99771 * 16 14 13 33 33 H 1.08998 * 109.47469 * 295.00258 * 16 14 13 34 34 H 1.00897 * 111.00281 * 56.04809 * 17 16 14 35 35 H 1.09004 * 109.47373 * 299.99472 * 18 17 16 36 36 H 1.08996 * 109.47349 * 60.00050 * 18 17 16 37 37 H 0.96998 * 120.00137 * 0.02562 * 21 19 18 38 38 H 0.97005 * 119.99888 * 359.97438 * 23 22 21 39 39 H 0.96998 * 120.00682 * 179.97438 * 23 22 21 40 40 H 1.09002 * 115.54973 * 85.58492 * 25 14 13 41 41 H 1.09001 * 117.49733 * 214.97413 * 26 25 14 42 42 H 1.08995 * 117.49577 * 359.97438 * 26 25 14 43 43 H 1.09004 * 117.50150 * 252.51496 * 27 26 25 44 44 H 1.09004 * 117.49681 * 107.48417 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7913 -5.5023 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3307 -7.7150 -0.0008 15 1 1.4146 -7.7601 0.5883 16 6 3.3760 -8.6510 0.6092 17 7 3.7484 -8.1651 1.9445 18 6 4.7523 -9.0416 2.5626 19 6 5.1084 -8.5128 3.9282 20 8 4.5786 -7.5052 4.3450 21 7 6.0165 -9.1595 4.6855 22 6 6.3353 -8.6863 5.9065 23 7 7.2437 -9.3327 6.6636 24 8 5.8035 -7.6767 6.3249 25 6 2.0345 -8.1487 -1.4379 26 6 0.6524 -8.7372 -1.7282 27 6 1.0057 -7.3336 -2.2240 28 1 -0.4850 0.8400 0.0004 29 1 3.1246 -3.7313 0.8894 30 1 3.1246 -3.7312 -0.8906 31 1 3.8011 -6.1835 -0.0004 32 1 2.9607 -9.6555 0.6909 33 1 4.2596 -8.6739 -0.0286 34 1 2.9359 -8.0735 2.5357 35 1 4.3462 -10.0486 2.6579 36 1 5.6455 -9.0676 1.9384 37 1 6.4412 -9.9651 4.3514 38 1 7.6679 -10.1387 6.3299 39 1 7.4735 -8.9920 7.5423 40 1 2.8813 -8.5568 -1.9897 41 1 0.5899 -9.5325 -2.4709 42 1 -0.0461 -8.8159 -0.8951 43 1 0.5395 -6.4886 -1.7172 44 1 1.1757 -7.2055 -3.2931 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733165228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:27 Heat of formation + Delta-G solvation = -106.375231 kcal Electronic energy + Delta-G solvation = -27109.426320 eV Core-core repulsion = 22994.774667 eV Total energy + Delta-G solvation = -4114.651653 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.135 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.12052 -40.94083 -39.48931 -38.35946 -36.66095 -35.81177 -34.75973 -34.58062 -34.30679 -31.60526 -29.78965 -27.72718 -27.32158 -24.00184 -23.20038 -22.95059 -22.01272 -21.57660 -21.21478 -19.86237 -19.70941 -18.69303 -17.88956 -17.53827 -17.20338 -16.97501 -16.92652 -16.88493 -16.33682 -16.09308 -15.83700 -15.59269 -15.44534 -15.13703 -14.77045 -14.63926 -14.54239 -14.31393 -13.68444 -13.45464 -13.16099 -12.96713 -12.92061 -12.78452 -12.58120 -12.25989 -12.21503 -12.17512 -11.70753 -11.26767 -11.24658 -11.15845 -11.09052 -10.82819 -10.74173 -10.70486 -10.26588 -9.85566 -9.38635 -8.64669 -8.35127 -6.11980 1.06093 1.27787 1.39921 1.46787 1.48517 1.59139 1.73257 2.25481 2.26084 2.33475 2.98487 2.98926 3.08831 3.33852 3.36369 3.73051 3.80259 4.00947 4.09359 4.18796 4.31109 4.32291 4.35123 4.42931 4.47609 4.53340 4.57042 4.74458 4.86876 4.98507 5.05545 5.10969 5.32686 5.41210 5.45800 5.47634 5.65157 5.84701 5.98665 6.19613 6.20374 6.58991 6.67874 7.06046 7.17302 7.41335 7.45326 8.74458 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.008089 B = 0.002683 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3460.493255 B =10432.062444 C =13472.827277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.078 0.922 9 S -0.146 6.146 10 C -0.129 4.129 11 C 0.537 3.463 12 O -0.561 6.561 13 N -0.691 5.691 14 C 0.174 3.826 15 H 0.057 0.943 16 C 0.071 3.929 17 N -0.700 5.700 18 C 0.056 3.944 19 C 0.506 3.494 20 O -0.518 6.518 21 N -0.671 5.671 22 C 0.687 3.313 23 N -0.829 5.829 24 O -0.606 6.606 25 C -0.150 4.150 26 C -0.158 4.158 27 C -0.212 4.212 28 H 0.271 0.729 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.413 0.587 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.341 0.659 35 H 0.107 0.893 36 H 0.145 0.855 37 H 0.437 0.563 38 H 0.422 0.578 39 H 0.424 0.576 40 H 0.136 0.864 41 H 0.117 0.883 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.171 -33.052 3.028 38.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.694 4.694 8 H 0.096 0.904 9 S 0.081 5.919 10 C -0.281 4.281 11 C 0.323 3.677 12 O -0.440 6.440 13 N -0.343 5.343 14 C 0.069 3.931 15 H 0.075 0.925 16 C -0.058 4.058 17 N -0.332 5.332 18 C -0.075 4.075 19 C 0.294 3.706 20 O -0.388 6.388 21 N -0.341 5.341 22 C 0.385 3.615 23 N -0.401 5.401 24 O -0.483 6.483 25 C -0.170 4.170 26 C -0.196 4.196 27 C -0.249 4.249 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.250 0.750 32 H 0.095 0.905 33 H 0.129 0.871 34 H 0.159 0.841 35 H 0.125 0.875 36 H 0.163 0.837 37 H 0.277 0.723 38 H 0.255 0.745 39 H 0.258 0.742 40 H 0.154 0.846 41 H 0.135 0.865 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 17.686 -31.436 3.245 36.215 hybrid contribution 1.588 0.461 0.571 1.750 sum 19.275 -30.975 3.816 36.681 Atomic orbital electron populations 1.70193 1.07910 1.28504 1.48168 1.26139 0.96023 1.03321 0.93785 0.84901 0.78518 0.76314 0.78180 1.18242 1.19522 1.19959 1.23233 0.95228 0.92287 1.58658 0.90356 1.85443 1.10515 0.98996 1.96973 1.23357 1.03396 0.95431 1.05881 1.19827 0.86415 0.86419 0.75042 1.90616 1.17155 1.85831 1.50354 1.45577 1.09900 1.04464 1.74345 1.20624 0.97546 0.80756 0.94133 0.92514 1.22210 0.98592 0.95912 0.89070 1.60058 1.16887 1.51608 1.04674 1.21961 0.99803 0.96166 0.89603 1.21829 0.77645 0.83125 0.88048 1.90909 1.50203 1.24913 1.72825 1.43865 1.42809 1.31302 1.16092 1.16570 0.80638 0.82841 0.81451 1.42861 1.43925 1.31855 1.21468 1.91130 1.56589 1.27469 1.73067 1.22706 0.94116 1.04115 0.96036 1.22949 0.97197 0.96036 1.03379 1.23159 1.05254 0.96440 1.00076 0.91995 0.88629 0.87704 0.75012 0.90501 0.87149 0.84070 0.87518 0.83695 0.72252 0.74545 0.74239 0.84628 0.86477 0.89991 0.90288 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.34 13.22 21.65 0.29 -58.05 16 2 C 0.01 0.71 5.49 84.86 0.47 1.18 16 3 Si 1.00 46.10 29.55 68.60 2.03 48.12 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.55 -33.14 9.50 67.95 0.65 -32.49 16 8 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 9 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 10 C -0.13 -5.67 6.16 71.23 0.44 -5.23 16 11 C 0.54 21.09 7.18 87.66 0.63 21.72 16 12 O -0.56 -26.48 12.89 -3.05 -0.04 -26.52 16 13 N -0.69 -18.42 4.78 -442.54 -2.12 -20.54 16 14 C 0.17 3.62 2.51 44.99 0.11 3.73 16 15 H 0.06 1.56 7.34 -2.38 -0.02 1.54 16 16 C 0.07 0.73 5.23 86.30 0.45 1.18 16 17 N -0.70 -10.58 5.85 -517.92 -3.03 -13.61 16 18 C 0.06 0.38 6.17 85.56 0.53 0.91 16 19 C 0.51 8.75 7.81 87.66 0.68 9.44 16 20 O -0.52 -17.31 14.60 19.89 0.29 -17.02 16 21 N -0.67 -6.31 5.24 -440.52 -2.31 -8.62 16 22 C 0.69 11.86 8.78 179.05 1.57 13.43 16 23 N -0.83 -4.07 8.88 -184.79 -1.64 -5.71 16 24 O -0.61 -20.20 15.58 18.93 0.29 -19.91 16 25 C -0.15 -2.83 5.36 -10.79 -0.06 -2.89 16 26 C -0.16 -3.18 10.18 30.59 0.31 -2.87 16 27 C -0.21 -5.83 9.73 30.60 0.30 -5.53 16 28 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 29 H 0.10 4.06 8.14 -2.40 -0.02 4.04 16 30 H 0.10 4.17 8.14 -2.39 -0.02 4.15 16 31 H 0.41 9.02 8.60 -92.71 -0.80 8.22 16 32 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.34 7.14 8.43 -89.70 -0.76 6.38 16 35 H 0.11 -0.06 8.14 -2.38 -0.02 -0.07 16 36 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 37 H 0.44 -1.48 8.71 -92.71 -0.81 -2.29 16 38 H 0.42 -1.96 8.84 -92.70 -0.82 -2.78 16 39 H 0.42 1.98 8.93 -92.71 -0.83 1.16 16 40 H 0.14 1.69 8.11 -2.39 -0.02 1.67 16 41 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.08 1.84 8.05 -2.39 -0.02 1.82 16 43 H 0.08 3.02 5.02 -2.39 -0.01 3.00 16 44 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -106.65 389.86 -4.23 -110.87 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -2.91 Total: 18.23 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 6.08 Total: 2.56 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -8.81 Total: -106.53 kcal Atomic # 8 Polarization: -64.00 SS G_CDS: 0.55 Total: -63.45 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -106.65 -4.23 -110.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733165228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.495 kcal (2) G-P(sol) polarization free energy of solvation -106.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -110.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds