Wall clock time and date at job start Wed Apr 1 2020 02:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31915 * 119.04322 * 2 1 4 4 C 1.32176 * 121.03207 * 180.02562 * 3 2 1 5 5 C 1.38805 * 119.14790 * 359.71996 * 4 3 2 6 6 C 1.39495 * 118.26350 * 0.55578 * 5 4 3 7 7 C 1.48447 * 120.55268 * 179.71337 * 6 5 4 8 8 O 1.21479 * 119.99628 * 359.72881 * 7 6 5 9 9 N 1.34778 * 120.00107 * 179.72881 * 7 6 5 10 10 C 1.48144 * 127.83366 * 180.02562 * 9 7 6 11 11 C 1.54397 * 104.61721 * 219.60669 * 10 9 7 12 12 H 1.08996 * 110.34043 * 95.00082 * 11 10 9 13 13 C 1.52996 * 110.34270 * 217.26864 * 11 10 9 14 14 F 1.39892 * 109.47618 * 58.54064 * 13 11 10 15 15 F 1.39896 * 109.47129 * 178.54408 * 13 11 10 16 16 F 1.39908 * 109.47025 * 298.53940 * 13 11 10 17 17 C 1.54289 * 104.95626 * 336.13426 * 11 10 9 18 18 H 1.08995 * 110.34276 * 241.12924 * 17 11 10 19 19 N 1.46500 * 110.34094 * 118.87259 * 17 11 10 20 20 C 1.36932 * 120.00338 * 155.00131 * 19 17 11 21 21 H 1.08009 * 119.99720 * 359.97438 * 20 19 17 22 22 C 1.38807 * 120.00342 * 180.02562 * 20 19 17 23 23 N 1.31616 * 120.00306 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00064 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46816 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47280 * 119.99847 * 24 22 20 27 27 H 1.48503 * 109.46931 * 239.99592 * 24 22 20 28 28 C 1.48137 * 127.83919 * 0.02987 * 9 7 6 29 29 N 1.31556 * 119.03810 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46922 * 269.98341 * 1 2 3 31 31 H 1.09003 * 109.47094 * 29.97661 * 1 2 3 32 32 H 1.08998 * 109.47671 * 149.97835 * 1 2 3 33 33 H 1.08006 * 120.42030 * 180.02562 * 4 3 2 34 34 H 1.08000 * 120.86727 * 180.30271 * 5 4 3 35 35 H 1.09000 * 110.40667 * 100.82256 * 10 9 7 36 36 H 1.08999 * 110.41335 * 338.38847 * 10 9 7 37 37 H 0.97001 * 120.00154 * 334.99627 * 19 17 11 38 38 H 0.96997 * 120.00591 * 180.02562 * 23 22 20 39 39 H 1.09004 * 110.40594 * 259.18063 * 28 9 7 40 40 H 1.08999 * 110.40558 * 21.49009 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1533 0.0000 4 6 3.4684 1.1991 -0.0005 5 6 4.1861 0.0111 0.0049 6 6 3.4761 -1.1896 -0.0013 7 6 4.1923 -2.4899 -0.0023 8 8 5.4069 -2.5142 -0.0028 9 7 3.4952 -3.6433 -0.0028 10 6 4.0265 -5.0262 -0.0033 11 6 3.0918 -5.8024 -0.9560 12 1 3.5154 -5.8340 -1.9598 13 6 2.8562 -7.2202 -0.4318 14 9 2.2966 -7.1570 0.8488 15 9 1.9817 -7.8955 -1.2899 16 9 4.0750 -7.9049 -0.3748 17 6 1.7713 -5.0043 -0.9561 18 1 0.9550 -5.6224 -0.5826 19 7 1.4689 -4.5201 -2.3053 20 6 0.1743 -4.2539 -2.6630 21 1 -0.6240 -4.4012 -1.9506 22 6 -0.1123 -3.7956 -3.9416 23 7 0.8604 -3.6165 -4.8099 24 14 -1.8784 -3.4317 -4.4294 25 1 -2.7769 -3.7121 -3.2808 26 1 -2.0007 -2.0035 -4.8169 27 1 -2.2616 -4.2909 -5.5784 28 6 2.0239 -3.8159 -0.0030 29 7 2.1455 -1.1502 -0.0005 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5141 33 1 3.9826 2.1489 -0.0001 34 1 5.2661 0.0162 0.0095 35 1 3.9837 -5.4502 1.0000 36 1 5.0494 -5.0403 -0.3795 37 1 2.1858 -4.3881 -2.9452 38 1 0.6603 -3.2960 -5.7033 39 1 1.6687 -4.0510 1.0004 40 1 1.5357 -2.9159 -0.3769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099342014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:32 Heat of formation + Delta-G solvation = -105.030255 kcal Electronic energy + Delta-G solvation = -31388.628578 eV Core-core repulsion = 26596.734556 eV Total energy + Delta-G solvation = -4791.894022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.91572 -47.42807 -47.32717 -41.26224 -39.59314 -37.65833 -34.21581 -33.88009 -33.20355 -31.94118 -30.56612 -28.46372 -27.61049 -26.65760 -24.85430 -24.09597 -23.01701 -22.20467 -20.35440 -19.97763 -18.34225 -18.24756 -18.00906 -17.65996 -17.00426 -16.65083 -15.99055 -15.61679 -15.42291 -14.96668 -14.77340 -14.65446 -14.28781 -14.23817 -13.82230 -13.75914 -13.63774 -13.49731 -13.44198 -13.35127 -13.30987 -13.21453 -12.53073 -12.30447 -12.18232 -11.86256 -11.68632 -11.39182 -10.97266 -10.94891 -10.89102 -10.83329 -10.63541 -10.31911 -10.14364 -9.85554 -9.52992 -9.30651 -8.99504 -8.59005 -7.14981 -5.90021 -3.21444 0.50638 0.90511 2.66044 2.81355 3.03880 3.35357 3.41573 3.44065 3.75335 3.83961 3.96399 4.01247 4.08669 4.21107 4.42134 4.49775 4.78433 4.86367 4.93965 4.96511 5.23934 5.35903 5.38267 5.40468 5.53201 5.57583 5.61038 5.66671 5.78779 5.93593 5.97084 6.07585 6.13777 6.31158 6.43985 6.82808 6.90599 7.55405 7.59236 7.91811 8.13449 8.24793 9.37799 9.87526 10.22926 11.31661 Molecular weight = 344.12amu Principal moments of inertia in cm(-1) A = 0.007576 B = 0.005841 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3695.042185 B = 4792.922235 C = 7543.660506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.321 3.679 3 N -0.509 5.509 4 C 0.151 3.849 5 C -0.183 4.183 6 C 0.146 3.854 7 C 0.592 3.408 8 O -0.537 6.537 9 N -0.587 5.587 10 C 0.116 3.884 11 C -0.168 4.168 12 H 0.129 0.871 13 C 0.465 3.535 14 F -0.183 7.183 15 F -0.173 7.173 16 F -0.188 7.188 17 C 0.177 3.823 18 H 0.078 0.922 19 N -0.708 5.708 20 C -0.246 4.246 21 H 0.075 0.925 22 C -0.005 4.005 23 N -0.927 5.927 24 Si 0.906 3.094 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.057 3.943 29 N -0.474 5.474 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.175 0.825 34 H 0.158 0.842 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.063 0.937 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.430 2.724 12.213 13.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 N -0.224 5.224 4 C -0.017 4.017 5 C -0.206 4.206 6 C -0.002 4.002 7 C 0.379 3.621 8 O -0.414 6.414 9 N -0.318 5.318 10 C -0.007 4.007 11 C -0.189 4.189 12 H 0.147 0.853 13 C 0.410 3.590 14 F -0.165 7.165 15 F -0.154 7.154 16 F -0.169 7.169 17 C 0.064 3.936 18 H 0.096 0.904 19 N -0.348 5.348 20 C -0.376 4.376 21 H 0.093 0.907 22 C -0.202 4.202 23 N -0.574 5.574 24 Si 0.737 3.263 25 H -0.203 1.203 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.068 4.068 29 N -0.191 5.191 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.192 0.808 34 H 0.176 0.824 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.934 2.754 12.174 13.087 hybrid contribution 0.286 -0.052 -0.617 0.682 sum 4.219 2.702 11.557 12.596 Atomic orbital electron populations 1.20663 0.85089 1.05235 1.03796 1.23399 0.98507 0.82912 0.89737 1.68212 1.10349 1.30633 1.13241 1.23294 0.89539 0.98438 0.90379 1.22874 1.03614 0.92975 1.01093 1.21461 0.90067 0.94165 0.94477 1.17318 0.85721 0.81871 0.77211 1.90771 1.12498 1.86511 1.51648 1.48573 1.09667 1.03979 1.69557 1.22203 0.98183 0.81358 0.98933 1.23928 1.02364 0.89669 1.02960 0.85317 1.20279 0.73855 0.89323 0.75536 1.93153 1.85665 1.96714 1.40953 1.93234 1.69844 1.82282 1.70016 1.93170 1.44971 1.82487 1.96297 1.21109 0.91315 0.92168 0.88991 0.90444 1.42394 1.07032 1.77881 1.07456 1.19230 0.84344 1.37604 0.96433 0.90671 1.24751 0.97447 1.01671 0.96355 1.69666 1.30421 1.51630 1.05678 0.86143 0.84245 0.77585 0.78344 1.20268 1.21819 1.21801 1.24250 0.78291 1.04571 0.99645 1.68414 1.08370 1.29986 1.12326 0.89615 0.89542 0.88390 0.80822 0.82433 0.89991 0.88681 0.77956 0.93398 0.91918 0.84336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 10.31 36.01 0.37 -0.72 16 2 C 0.32 4.76 7.64 -157.30 -1.20 3.56 16 3 N -0.51 -7.05 10.32 -10.73 -0.11 -7.16 16 4 C 0.15 1.75 11.31 -17.19 -0.19 1.56 16 5 C -0.18 -2.39 9.72 -38.90 -0.38 -2.76 16 6 C 0.15 2.34 6.77 -82.64 -0.56 1.78 16 7 C 0.59 10.18 7.92 -12.05 -0.10 10.08 16 8 O -0.54 -9.95 16.69 5.38 0.09 -9.86 16 9 N -0.59 -9.56 3.32 -170.18 -0.56 -10.12 16 10 C 0.12 1.66 6.33 -2.41 -0.02 1.64 16 11 C -0.17 -2.57 2.84 -89.22 -0.25 -2.82 16 12 H 0.13 2.07 7.67 -51.93 -0.40 1.67 16 13 C 0.46 6.77 2.51 37.16 0.09 6.86 16 14 F -0.18 -2.57 16.04 2.25 0.04 -2.53 16 15 F -0.17 -2.86 17.07 2.25 0.04 -2.82 16 16 F -0.19 -2.60 17.11 2.25 0.04 -2.56 16 17 C 0.18 3.16 3.01 -66.51 -0.20 2.96 16 18 H 0.08 1.39 7.34 -51.93 -0.38 1.01 16 19 N -0.71 -16.04 5.11 -52.05 -0.27 -16.31 16 20 C -0.25 -6.20 9.96 -15.06 -0.15 -6.35 16 21 H 0.08 1.83 7.83 -52.48 -0.41 1.42 16 22 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 23 N -0.93 -26.56 13.06 55.49 0.72 -25.83 16 24 Si 0.91 21.15 29.55 -169.99 -5.02 16.13 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 C 0.06 0.95 6.28 -2.40 -0.02 0.94 16 29 N -0.47 -7.69 6.70 -7.32 -0.05 -7.74 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.17 1.28 8.06 -52.48 -0.42 0.86 16 34 H 0.16 1.78 7.74 -52.49 -0.41 1.38 16 35 H 0.08 1.03 7.32 -51.93 -0.38 0.65 16 36 H 0.09 1.32 7.88 -51.93 -0.41 0.92 16 37 H 0.39 9.60 7.55 -40.82 -0.31 9.29 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.14 2.57 5.09 -51.93 -0.26 2.30 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -30.47 353.74 -6.66 -37.12 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -4.21 Total: 9.85 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: -2.69 Total: 16.50 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -0.27 Total: -67.16 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 9 Polarization: -8.03 SS G_CDS: 0.11 Total: -7.91 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.47 -6.66 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099342014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.906 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds