Wall clock time and date at job start Wed Apr 1 2020 03:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47024 * 2 1 4 4 C 1.34695 * 117.00167 * 180.02562 * 3 2 1 5 5 O 1.21454 * 119.99881 * 359.97438 * 4 3 2 6 6 C 1.47874 * 120.00313 * 179.97438 * 4 3 2 7 7 C 1.39931 * 120.46360 * 6.22658 * 6 4 3 8 8 C 1.38424 * 118.35418 * 179.73098 * 7 6 4 9 9 C 1.39337 * 119.19328 * 0.49129 * 8 7 6 10 10 C 1.48298 * 119.56687 * 179.77495 * 9 8 7 11 11 O 1.21524 * 119.99695 * 359.72367 * 10 9 8 12 12 N 1.34772 * 119.99778 * 179.72567 * 10 9 8 13 13 C 1.40458 * 119.99756 * 179.97438 * 12 10 9 14 14 C 1.40686 * 126.08759 * 359.97438 * 13 12 10 15 15 N 1.30902 * 108.37691 * 179.77737 * 14 13 12 16 16 N 1.40061 * 108.42200 * 0.37909 * 15 14 13 17 17 C 1.37315 * 126.06121 * 179.88124 * 16 15 14 18 18 H 1.08005 * 119.99800 * 179.69173 * 17 16 15 19 19 C 1.38992 * 120.00039 * 359.40940 * 17 16 15 20 20 N 1.31286 * 120.00139 * 0.28170 * 19 17 16 21 21 Si 1.86803 * 119.99744 * 180.27489 * 19 17 16 22 22 H 1.48500 * 109.46917 * 60.00440 * 21 19 17 23 23 H 1.48503 * 109.46742 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47280 * 300.00437 * 21 19 17 25 25 C 1.35724 * 126.09202 * 179.97438 * 13 12 10 26 26 N 1.32733 * 120.86279 * 359.49166 * 9 8 7 27 27 C 1.31404 * 121.80424 * 0.26079 * 26 9 8 28 28 C 1.50704 * 119.64363 * 179.97438 * 27 26 9 29 29 H 1.09001 * 109.47337 * 60.00061 * 1 2 3 30 30 H 1.09007 * 109.46860 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47085 * 299.99891 * 1 2 3 32 32 H 1.08999 * 109.47176 * 239.99753 * 2 1 3 33 33 H 1.09001 * 109.47337 * 119.99939 * 2 1 3 34 34 H 1.08000 * 120.82459 * 359.97438 * 7 6 4 35 35 H 1.08001 * 120.40615 * 180.24066 * 8 7 6 36 36 H 0.97000 * 120.00161 * 359.97438 * 12 10 9 37 37 H 1.07995 * 125.81028 * 359.97438 * 14 13 12 38 38 H 0.97001 * 120.00085 * 180.02562 * 20 19 17 39 39 H 1.08004 * 126.24651 * 0.02562 * 25 13 12 40 40 H 1.09001 * 109.46828 * 96.58163 * 28 27 26 41 41 H 1.08996 * 109.47097 * 216.58090 * 28 27 26 42 42 H 1.08996 * 109.46828 * 336.58319 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3493 1.5455 -0.0005 5 8 4.0892 0.5823 -0.0005 6 6 3.9145 2.9120 -0.0011 7 6 3.0778 4.0259 0.1297 8 6 3.6539 5.2845 0.1292 9 6 5.0354 5.3996 -0.0107 10 6 5.6608 6.7442 -0.0173 11 8 4.9685 7.7368 0.0938 12 7 6.9968 6.8653 -0.1466 13 6 7.5891 8.1389 -0.1534 14 6 6.9138 9.3675 -0.0351 15 7 7.7990 10.3308 -0.0792 16 7 9.0680 9.7590 -0.2354 17 6 10.2563 10.4412 -0.3260 18 1 11.1831 9.8985 -0.4407 19 6 10.2659 11.8301 -0.2759 20 7 9.1394 12.4898 -0.1364 21 14 11.8818 12.7583 -0.4068 22 1 12.5307 12.4416 -1.7044 23 1 11.6219 14.2182 -0.3260 24 1 12.7771 12.3529 0.7063 25 6 8.9147 8.4036 -0.2752 26 7 5.7996 4.3211 -0.1326 27 6 5.2921 3.1091 -0.1319 28 6 6.2051 1.9186 -0.2741 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.0093 3.9064 0.2324 35 1 3.0396 6.1669 0.2320 36 1 7.5494 6.0730 -0.2350 37 1 5.8471 9.4940 0.0765 38 1 9.1461 13.4592 -0.1019 39 1 9.7040 7.6746 -0.3847 40 1 6.4350 1.5171 0.7129 41 1 5.7124 1.1522 -0.8723 42 1 7.1283 2.2255 -0.7655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747433607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:59 Heat of formation + Delta-G solvation = 5.253998 kcal Electronic energy + Delta-G solvation = -28138.738753 eV Core-core repulsion = 23893.483755 eV Total energy + Delta-G solvation = -4245.254998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.35523 -40.32150 -39.63954 -38.32683 -37.04699 -34.39648 -33.51078 -33.17146 -32.85073 -31.93488 -30.26752 -28.21696 -27.98278 -26.08809 -24.70539 -23.76647 -22.51229 -21.96306 -21.08919 -20.56758 -19.45527 -18.39186 -17.99437 -17.27015 -17.07443 -17.01352 -16.42497 -15.48664 -15.31315 -15.09804 -14.69197 -14.60401 -14.57718 -14.01996 -13.95770 -13.65250 -13.42303 -13.27116 -13.19189 -13.01731 -12.84353 -12.51796 -12.44125 -12.26798 -12.03659 -11.69480 -11.46274 -11.25520 -11.00428 -10.98298 -10.65139 -10.56831 -10.30071 -10.19814 -10.11402 -9.37790 -9.34551 -9.18032 -8.84463 -8.09060 -6.72031 -6.57842 -4.24474 -0.06769 0.89113 1.97025 2.14374 2.78376 3.00347 3.04226 3.08522 3.33242 3.50813 3.79117 3.80604 3.92488 4.15708 4.32332 4.42585 4.46526 4.49797 4.55021 4.67045 4.79488 4.82523 5.00592 5.05033 5.25016 5.30277 5.31697 5.40302 5.47046 5.51893 5.63533 5.76873 5.83756 6.02725 6.23815 6.27285 6.43398 6.85107 6.92165 7.04462 7.20040 7.31399 7.45487 7.83107 8.13327 8.24074 8.56511 8.76968 9.34501 9.63463 10.37941 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.036802 B = 0.001814 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.641668 B =15432.972751 C =16163.740264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.354 6.354 4 C 0.517 3.483 5 O -0.496 6.496 6 C -0.178 4.178 7 C -0.018 4.018 8 C -0.138 4.138 9 C 0.141 3.859 10 C 0.542 3.458 11 O -0.526 6.526 12 N -0.591 5.591 13 C -0.066 4.066 14 C -0.028 4.028 15 N -0.261 5.261 16 N -0.139 5.139 17 C -0.322 4.322 18 H 0.117 0.883 19 C 0.046 3.954 20 N -0.768 5.768 21 Si 0.936 3.064 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.266 1.266 25 C -0.079 4.079 26 N -0.469 5.469 27 C 0.197 3.803 28 C -0.112 4.112 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.409 0.591 37 H 0.177 0.823 38 H 0.276 0.724 39 H 0.148 0.852 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.544 -22.742 -0.038 25.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.271 6.271 4 C 0.362 3.638 5 O -0.385 6.385 6 C -0.181 4.181 7 C -0.043 4.043 8 C -0.159 4.159 9 C 0.002 3.998 10 C 0.326 3.674 11 O -0.402 6.402 12 N -0.232 5.232 13 C -0.172 4.172 14 C -0.203 4.203 15 N -0.092 5.092 16 N 0.094 4.906 17 C -0.455 4.455 18 H 0.135 0.865 19 C -0.171 4.171 20 N -0.395 5.395 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.191 1.191 25 C -0.230 4.230 26 N -0.181 5.181 27 C 0.056 3.944 28 C -0.169 4.169 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.173 0.827 35 H 0.178 0.822 36 H 0.244 0.756 37 H 0.194 0.806 38 H 0.087 0.913 39 H 0.165 0.835 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.831 -20.678 0.010 23.824 hybrid contribution -0.049 -1.228 -0.016 1.229 sum -11.879 -21.907 -0.006 24.920 Atomic orbital electron populations 1.21826 0.92383 1.03158 1.03726 1.23082 0.95478 0.79594 1.02857 1.86534 1.23560 1.32846 1.84153 1.20856 0.80698 0.89314 0.72965 1.90804 1.59735 1.42449 1.45515 1.20038 0.95009 0.91294 1.11804 1.21914 1.00952 0.90747 0.90699 1.22138 0.95042 0.98972 0.99745 1.21720 0.91474 0.92954 0.93644 1.17599 0.82552 0.86561 0.80689 1.90697 1.62174 1.36599 1.50771 1.42324 1.06156 1.07729 1.66985 1.17287 0.91573 0.84234 1.24096 1.24142 1.00176 0.88650 1.07380 1.78263 0.86501 1.19106 1.25281 1.44561 1.05867 1.01979 1.38237 1.19869 0.82990 0.89986 1.52610 0.86531 1.25653 0.99127 0.96890 0.95440 1.70201 1.25908 1.08704 1.34639 0.85880 0.80236 0.78441 0.79515 1.19122 1.20105 1.19120 1.21284 0.95254 0.87184 1.19305 1.67655 1.39259 0.97789 1.13422 1.21483 0.90235 0.93257 0.89420 1.21106 0.98359 0.93289 1.04164 0.91323 0.90056 0.91334 0.90966 0.90966 0.82686 0.82236 0.75638 0.80598 0.91334 0.83458 0.89511 0.88280 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 10.29 37.16 0.38 -0.23 16 2 C 0.06 0.39 6.19 37.16 0.23 0.63 16 3 O -0.35 -3.04 9.56 -40.48 -0.39 -3.43 16 4 C 0.52 5.28 7.83 34.68 0.27 5.55 16 5 O -0.50 -5.66 13.15 -19.23 -0.25 -5.92 16 6 C -0.18 -1.90 5.89 -104.75 -0.62 -2.52 16 7 C -0.02 -0.17 9.73 -38.88 -0.38 -0.55 16 8 C -0.14 -1.64 9.62 -39.10 -0.38 -2.02 16 9 C 0.14 2.06 6.75 -82.93 -0.56 1.50 16 10 C 0.54 9.96 7.78 -12.12 -0.09 9.86 16 11 O -0.53 -11.06 13.46 5.35 0.07 -10.99 16 12 N -0.59 -11.21 5.45 -10.73 -0.06 -11.27 16 13 C -0.07 -1.54 6.90 -83.88 -0.58 -2.12 16 14 C -0.03 -0.73 10.85 -17.02 -0.18 -0.91 16 15 N -0.26 -7.56 10.39 30.81 0.32 -7.24 16 16 N -0.14 -3.83 3.74 -11.40 -0.04 -3.87 16 17 C -0.32 -8.50 10.25 -14.82 -0.15 -8.65 16 18 H 0.12 2.73 7.83 -52.48 -0.41 2.32 16 19 C 0.05 1.19 5.50 -17.51 -0.10 1.10 16 20 N -0.77 -21.34 11.81 55.49 0.66 -20.68 16 21 Si 0.94 18.80 29.55 -169.99 -5.02 13.78 16 22 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 23 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 25 C -0.08 -1.87 11.49 -16.39 -0.19 -2.06 16 26 N -0.47 -6.36 9.43 -5.74 -0.05 -6.42 16 27 C 0.20 2.32 6.82 -82.20 -0.56 1.76 16 28 C -0.11 -1.11 8.87 36.01 0.32 -0.79 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.16 1.06 7.71 -52.49 -0.40 0.66 16 35 H 0.16 1.78 7.63 -52.49 -0.40 1.38 16 36 H 0.41 6.61 8.15 -40.82 -0.33 6.27 16 37 H 0.18 4.52 5.92 -52.49 -0.31 4.21 16 38 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.15 2.93 8.06 -52.48 -0.42 2.51 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 0.98 5.85 -51.93 -0.30 0.68 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -33.29 369.05 -6.47 -39.76 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -4.68 Total: 10.19 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -2.58 Total: 0.52 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.82 Total: -49.48 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.57 Total: -20.34 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.29 -6.47 -39.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747433607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.012 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds