Wall clock time and date at job start Wed Apr 1 2020 03:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47024 * 2 1 4 4 C 1.34695 * 117.00167 * 180.02562 * 3 2 1 5 5 O 1.21454 * 119.99881 * 359.97438 * 4 3 2 6 6 C 1.47874 * 120.00313 * 179.97438 * 4 3 2 7 7 C 1.39931 * 120.46360 * 6.22658 * 6 4 3 8 8 C 1.38424 * 118.35418 * 179.73098 * 7 6 4 9 9 C 1.39337 * 119.19328 * 0.49129 * 8 7 6 10 10 C 1.48298 * 119.56687 * 179.77495 * 9 8 7 11 11 O 1.21524 * 119.99695 * 359.72367 * 10 9 8 12 12 N 1.34772 * 119.99778 * 179.72567 * 10 9 8 13 13 C 1.40458 * 119.99756 * 179.97438 * 12 10 9 14 14 C 1.40686 * 126.08759 * 359.97438 * 13 12 10 15 15 N 1.30902 * 108.37691 * 179.77737 * 14 13 12 16 16 N 1.40061 * 108.42200 * 0.37909 * 15 14 13 17 17 C 1.37315 * 126.06121 * 179.88124 * 16 15 14 18 18 H 1.08005 * 119.99800 * 179.69173 * 17 16 15 19 19 C 1.38992 * 120.00039 * 359.40940 * 17 16 15 20 20 N 1.31286 * 120.00139 * 0.28170 * 19 17 16 21 21 Si 1.86803 * 119.99744 * 180.27489 * 19 17 16 22 22 H 1.48500 * 109.46917 * 60.00440 * 21 19 17 23 23 H 1.48503 * 109.46742 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47280 * 300.00437 * 21 19 17 25 25 C 1.35724 * 126.09202 * 179.97438 * 13 12 10 26 26 N 1.32733 * 120.86279 * 359.49166 * 9 8 7 27 27 C 1.31404 * 121.80424 * 0.26079 * 26 9 8 28 28 C 1.50704 * 119.64363 * 179.97438 * 27 26 9 29 29 H 1.09001 * 109.47337 * 60.00061 * 1 2 3 30 30 H 1.09007 * 109.46860 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47085 * 299.99891 * 1 2 3 32 32 H 1.08999 * 109.47176 * 239.99753 * 2 1 3 33 33 H 1.09001 * 109.47337 * 119.99939 * 2 1 3 34 34 H 1.08000 * 120.82459 * 359.97438 * 7 6 4 35 35 H 1.08001 * 120.40615 * 180.24066 * 8 7 6 36 36 H 0.97000 * 120.00161 * 359.97438 * 12 10 9 37 37 H 1.07995 * 125.81028 * 359.97438 * 14 13 12 38 38 H 0.97001 * 120.00085 * 180.02562 * 20 19 17 39 39 H 1.08004 * 126.24651 * 0.02562 * 25 13 12 40 40 H 1.09001 * 109.46828 * 96.58163 * 28 27 26 41 41 H 1.08996 * 109.47097 * 216.58090 * 28 27 26 42 42 H 1.08996 * 109.46828 * 336.58319 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3493 1.5455 -0.0005 5 8 4.0892 0.5823 -0.0005 6 6 3.9145 2.9120 -0.0011 7 6 3.0778 4.0259 0.1297 8 6 3.6539 5.2845 0.1292 9 6 5.0354 5.3996 -0.0107 10 6 5.6608 6.7442 -0.0173 11 8 4.9685 7.7368 0.0938 12 7 6.9968 6.8653 -0.1466 13 6 7.5891 8.1389 -0.1534 14 6 6.9138 9.3675 -0.0351 15 7 7.7990 10.3308 -0.0792 16 7 9.0680 9.7590 -0.2354 17 6 10.2563 10.4412 -0.3260 18 1 11.1831 9.8985 -0.4407 19 6 10.2659 11.8301 -0.2759 20 7 9.1394 12.4898 -0.1364 21 14 11.8818 12.7583 -0.4068 22 1 12.5307 12.4416 -1.7044 23 1 11.6219 14.2182 -0.3260 24 1 12.7771 12.3529 0.7063 25 6 8.9147 8.4036 -0.2752 26 7 5.7996 4.3211 -0.1326 27 6 5.2921 3.1091 -0.1319 28 6 6.2051 1.9186 -0.2741 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.0093 3.9064 0.2324 35 1 3.0396 6.1669 0.2320 36 1 7.5494 6.0730 -0.2350 37 1 5.8471 9.4940 0.0765 38 1 9.1461 13.4592 -0.1019 39 1 9.7040 7.6746 -0.3847 40 1 6.4350 1.5171 0.7129 41 1 5.7124 1.1522 -0.8723 42 1 7.1283 2.2255 -0.7655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747433607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:58 Heat of formation + Delta-G solvation = -16.248803 kcal Electronic energy + Delta-G solvation = -28139.671185 eV Core-core repulsion = 23893.483755 eV Total energy + Delta-G solvation = -4246.187429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.30441 -41.71743 -40.99952 -39.80563 -37.79751 -36.06787 -35.09462 -34.25110 -33.90192 -32.45899 -32.23058 -29.79507 -29.05396 -27.44562 -26.34869 -24.39027 -23.49262 -22.98042 -22.66839 -21.94947 -21.26942 -19.63258 -19.12098 -18.73673 -18.06007 -17.71378 -17.46734 -17.37849 -16.65349 -16.51297 -16.06313 -15.66256 -15.54706 -15.37726 -15.14195 -14.87575 -14.70215 -14.57959 -14.29081 -13.97345 -13.58078 -13.47850 -13.41047 -13.33712 -13.14370 -12.89153 -12.87356 -12.86288 -12.48929 -12.12837 -11.90670 -11.55425 -11.45669 -11.32690 -11.19014 -11.02662 -10.84549 -10.70831 -10.31277 -10.11709 -8.57328 -8.47557 -6.25158 -1.04882 -0.00114 0.96141 1.31012 1.40538 1.43660 1.57158 1.61908 1.86103 1.91444 2.18830 2.37856 2.70107 2.70908 2.99384 3.08735 3.37328 3.49023 3.63585 3.76447 3.99203 4.05811 4.09470 4.39098 4.41572 4.43657 4.55536 4.62706 4.67255 4.73921 4.81957 4.93669 4.96784 4.98980 5.04380 5.06423 5.15923 5.26522 5.32445 5.37421 5.48025 5.93613 6.25051 6.39807 6.55728 6.67058 6.71342 7.19118 7.43278 7.64807 8.51570 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.036802 B = 0.001814 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.641668 B =15432.972751 C =16163.740264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.353 6.353 4 C 0.521 3.479 5 O -0.509 6.509 6 C -0.171 4.171 7 C 0.001 3.999 8 C -0.133 4.133 9 C 0.119 3.881 10 C 0.546 3.454 11 O -0.555 6.555 12 N -0.591 5.591 13 C -0.054 4.054 14 C -0.052 4.052 15 N -0.308 5.308 16 N -0.164 5.164 17 C -0.355 4.355 18 H 0.141 0.859 19 C -0.005 4.005 20 N -0.822 5.822 21 Si 1.020 2.980 22 H -0.253 1.253 23 H -0.277 1.277 24 H -0.254 1.254 25 C -0.077 4.077 26 N -0.478 5.478 27 C 0.186 3.814 28 C -0.107 4.107 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.190 0.810 35 H 0.166 0.834 36 H 0.423 0.577 37 H 0.173 0.827 38 H 0.278 0.722 39 H 0.187 0.813 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.648 -25.420 -0.162 28.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.017 4.017 3 O -0.269 6.269 4 C 0.366 3.634 5 O -0.399 6.399 6 C -0.175 4.175 7 C -0.024 4.024 8 C -0.154 4.154 9 C -0.019 4.019 10 C 0.332 3.668 11 O -0.434 6.434 12 N -0.234 5.234 13 C -0.160 4.160 14 C -0.227 4.227 15 N -0.140 5.140 16 N 0.068 4.932 17 C -0.486 4.486 18 H 0.159 0.841 19 C -0.217 4.217 20 N -0.450 5.450 21 Si 0.839 3.161 22 H -0.177 1.177 23 H -0.202 1.202 24 H -0.178 1.178 25 C -0.228 4.228 26 N -0.190 5.190 27 C 0.046 3.954 28 C -0.164 4.164 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.207 0.793 35 H 0.183 0.817 36 H 0.261 0.739 37 H 0.190 0.810 38 H 0.087 0.913 39 H 0.204 0.796 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.954 -23.418 -0.116 26.293 hybrid contribution -0.241 -0.699 0.032 0.740 sum -12.195 -24.117 -0.084 27.025 Atomic orbital electron populations 1.21849 0.90563 1.04425 1.03778 1.23372 0.96867 0.78371 1.03116 1.86528 1.22336 1.34437 1.83613 1.20690 0.81261 0.88730 0.72727 1.90805 1.60242 1.42743 1.46098 1.20209 0.94825 0.92159 1.10313 1.22220 1.02415 0.89188 0.88566 1.22247 0.93887 1.00272 0.98965 1.21178 0.92345 0.91310 0.97065 1.18208 0.82019 0.87938 0.78612 1.90674 1.62805 1.38372 1.51536 1.42264 1.06750 1.06544 1.67864 1.17354 0.91433 0.85229 1.21964 1.24210 0.99987 0.89855 1.08644 1.78152 0.87867 1.20973 1.27013 1.44839 1.05655 1.03212 1.39520 1.20625 0.83587 0.91046 1.53362 0.84121 1.26888 1.03173 0.97577 0.94080 1.70380 1.28921 1.09029 1.36643 0.84641 0.74935 0.76333 0.80223 1.17745 1.20186 1.17751 1.21971 0.96408 0.86786 1.17597 1.67535 1.39592 0.98104 1.13800 1.21787 0.91263 0.92951 0.89437 1.21113 0.98255 0.92477 1.04559 0.91283 0.88205 0.91227 0.90748 0.90750 0.79253 0.81694 0.73949 0.81032 0.91270 0.79605 0.88931 0.88154 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.29 71.98 0.74 -0.04 16 2 C 0.06 0.55 6.19 71.98 0.45 1.00 16 3 O -0.35 -5.05 9.56 -56.05 -0.54 -5.59 16 4 C 0.52 9.30 7.83 70.37 0.55 9.86 16 5 O -0.51 -10.51 13.15 19.99 0.26 -10.25 16 6 C -0.17 -3.25 5.89 -19.94 -0.12 -3.37 16 7 C 0.00 0.02 9.73 22.72 0.22 0.24 16 8 C -0.13 -2.95 9.62 22.58 0.22 -2.73 16 9 C 0.12 3.36 6.75 41.95 0.28 3.65 16 10 C 0.55 20.20 7.78 86.92 0.68 20.88 16 11 O -0.56 -23.99 13.46 -3.79 -0.05 -24.04 16 12 N -0.59 -22.42 5.45 -306.15 -1.67 -24.09 16 13 C -0.05 -2.54 6.90 37.77 0.26 -2.28 16 14 C -0.05 -2.84 10.85 85.43 0.93 -1.91 16 15 N -0.31 -18.69 10.39 -56.45 -0.59 -19.28 16 16 N -0.16 -9.20 3.74 -189.99 -0.71 -9.91 16 17 C -0.36 -18.92 10.25 84.02 0.86 -18.06 16 18 H 0.14 6.48 7.83 -2.91 -0.02 6.46 16 19 C -0.01 -0.27 5.50 84.96 0.47 0.20 16 20 N -0.82 -47.44 11.81 21.66 0.26 -47.18 16 21 Si 1.02 38.56 29.55 68.60 2.03 40.59 16 22 H -0.25 -8.96 7.11 99.48 0.71 -8.26 16 23 H -0.28 -10.35 7.11 99.48 0.71 -9.64 16 24 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 25 C -0.08 -3.66 11.49 83.39 0.96 -2.70 16 26 N -0.48 -12.38 9.43 -172.09 -1.62 -14.00 16 27 C 0.19 4.07 6.82 42.99 0.29 4.36 16 28 C -0.11 -1.93 8.87 71.24 0.63 -1.30 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.10 0.18 8.14 -2.38 -0.02 0.16 16 31 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.19 1.81 7.71 -2.91 -0.02 1.79 16 35 H 0.17 3.47 7.63 -2.91 -0.02 3.45 16 36 H 0.42 13.37 8.15 -92.71 -0.76 12.61 16 37 H 0.17 9.34 5.92 -2.91 -0.02 9.33 16 38 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 39 H 0.19 7.07 8.06 -2.91 -0.02 7.05 16 40 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.10 1.80 5.85 -2.39 -0.01 1.79 16 42 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -75.61 369.05 5.13 -70.49 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: 0.34 Total: 35.45 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 7.42 Total: 7.80 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -4.33 Total: -114.46 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -0.32 Total: -39.87 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -75.61 5.13 -70.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747433607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.238 kcal (2) G-P(sol) polarization free energy of solvation -75.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds