Wall clock time and date at job start Wed Apr 1 2020 03:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34442 * 119.83071 * 2 1 4 4 O 1.21861 * 118.50011 * 359.97438 * 3 2 1 5 5 N 1.33419 * 122.99217 * 180.02562 * 3 2 1 6 6 C 1.32187 * 121.59629 * 359.97438 * 5 3 2 7 7 O 1.34946 * 120.79966 * 179.97438 * 6 5 3 8 8 C 1.46639 * 118.40581 * 359.97438 * 6 5 3 9 9 C 1.40693 * 122.10111 * 180.02562 * 8 6 5 10 10 C 1.48177 * 121.19573 * 0.04060 * 9 8 6 11 11 O 1.21502 * 119.99910 * 306.09286 * 10 9 8 12 12 N 1.34770 * 119.99858 * 126.08977 * 10 9 8 13 13 C 1.46504 * 119.99911 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47103 * 180.02562 * 13 12 10 15 15 H 1.08001 * 120.00160 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99890 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00036 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00166 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47183 * 89.99814 * 18 16 14 20 20 H 1.48503 * 109.46887 * 210.00240 * 18 16 14 21 21 H 1.48498 * 109.46772 * 329.99810 * 18 16 14 22 22 C 1.39437 * 117.60901 * 180.02562 * 9 8 6 23 23 C 1.38733 * 119.32440 * 359.97438 * 22 9 8 24 24 C 1.50700 * 119.13171 * 180.02562 * 23 22 9 25 25 C 1.52999 * 117.49987 * 343.72800 * 24 23 22 26 26 C 1.52995 * 117.49980 * 275.06372 * 24 23 22 27 27 N 1.31665 * 121.72823 * 359.97438 * 23 22 9 28 28 C 1.32350 * 121.76615 * 0.02562 * 27 23 22 29 29 H 1.09001 * 109.47375 * 270.02039 * 1 2 3 30 30 H 1.09002 * 109.47126 * 30.02294 * 1 2 3 31 31 H 1.08998 * 109.47399 * 150.02042 * 1 2 3 32 32 H 0.96701 * 114.00252 * 0.02562 * 7 6 5 33 33 H 0.97005 * 120.00062 * 0.02562 * 12 10 9 34 34 H 1.08995 * 109.47611 * 300.00692 * 13 12 10 35 35 H 1.09005 * 109.46420 * 60.00702 * 13 12 10 36 36 H 0.96998 * 120.00299 * 179.97438 * 17 16 14 37 37 H 1.08003 * 120.33489 * 180.02562 * 22 9 8 38 38 H 1.09002 * 115.54820 * 129.40245 * 24 23 22 39 39 H 1.08999 * 117.50040 * 359.97438 * 25 24 23 40 40 H 1.09004 * 117.49794 * 145.02472 * 25 24 23 41 41 H 1.09001 * 117.50402 * 214.98141 * 26 24 23 42 42 H 1.09004 * 117.50324 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1337 1.1663 0.0000 4 8 1.4939 2.2034 -0.0005 5 7 3.4659 1.2399 -0.0005 6 6 4.2195 0.1539 -0.0005 7 8 5.5657 0.2470 -0.0016 8 6 3.5575 -1.1546 0.0006 9 6 4.2834 -2.3598 0.0012 10 6 5.7652 -2.3632 0.0016 11 8 6.3744 -1.7450 -0.8487 12 7 6.4372 -3.0520 0.9451 13 6 7.9022 -3.0559 0.9452 14 6 8.4023 -3.8940 2.0935 15 1 7.6991 -4.3760 2.7566 16 6 9.7574 -4.0456 2.2975 17 7 10.1939 -4.7774 3.2993 18 14 10.9736 -3.2114 1.1510 19 1 11.2981 -1.8593 1.6724 20 1 12.2150 -4.0224 1.0713 21 1 10.3744 -3.0894 -0.2023 22 6 3.5585 -3.5509 0.0017 23 6 2.1720 -3.5023 0.0021 24 6 1.3927 -4.7922 0.0032 25 6 2.1424 -6.0708 -0.3764 26 6 1.1295 -5.4598 -1.3480 27 7 1.5191 -2.3589 0.0026 28 6 2.1509 -1.1959 0.0021 29 1 -0.3634 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5135 32 1 5.8972 1.1554 -0.0018 33 1 5.9508 -3.5458 1.6238 34 1 8.2646 -3.4737 0.0060 35 1 8.2681 -2.0349 1.0539 36 1 11.1472 -4.8844 3.4426 37 1 4.0711 -4.5015 0.0025 38 1 0.6156 -4.8713 0.7635 39 1 3.1991 -5.9790 -0.6275 40 1 1.8582 -6.9912 0.1337 41 1 0.1795 -5.9784 -1.4767 42 1 1.5196 -4.9658 -2.2380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914445708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:16 Heat of formation + Delta-G solvation = -1.073230 kcal Electronic energy + Delta-G solvation = -29963.226213 eV Core-core repulsion = 25717.696846 eV Total energy + Delta-G solvation = -4245.529367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.24798 -40.22483 -39.30158 -38.58644 -37.53959 -35.70947 -34.94293 -34.55111 -33.04889 -32.36741 -30.69787 -28.29486 -27.65127 -26.14813 -24.90565 -23.56065 -22.86349 -22.70338 -21.73717 -20.21547 -20.11212 -19.28485 -18.10883 -17.55603 -17.13239 -16.91283 -16.50050 -16.04644 -15.85166 -15.46519 -15.33381 -15.15902 -14.71397 -14.54370 -14.25880 -14.16869 -14.00681 -13.38751 -13.24664 -13.20174 -12.66040 -12.54189 -12.46777 -12.23169 -11.84176 -11.44922 -11.21442 -11.06472 -10.92358 -10.90868 -10.78090 -10.56724 -10.38336 -10.15610 -10.08266 -9.82675 -9.64003 -9.54141 -8.89989 -8.72912 -8.39725 -6.31468 -4.35249 -0.24946 0.47354 1.24042 1.99720 2.60280 2.68562 2.96447 3.18840 3.20633 3.26487 3.32435 3.38203 3.50257 3.68316 3.81853 4.16652 4.23411 4.32965 4.40444 4.47667 4.60762 4.67781 4.75492 4.97870 5.02077 5.03682 5.14346 5.16068 5.26807 5.37839 5.48498 5.55489 5.60073 5.67384 5.73321 5.96997 6.06620 6.61326 6.88774 6.90343 6.93126 7.21150 7.23103 7.54343 7.89369 7.90165 8.28890 8.50221 8.68234 9.26963 10.80195 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.010654 B = 0.003685 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.611136 B = 7596.678294 C = 9691.478913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.537 5.537 3 C 0.676 3.324 4 O -0.521 6.521 5 N -0.610 5.610 6 C 0.492 3.508 7 O -0.400 6.400 8 C -0.202 4.202 9 C 0.032 3.968 10 C 0.541 3.459 11 O -0.511 6.511 12 N -0.688 5.688 13 C 0.222 3.778 14 C -0.548 4.548 15 H 0.081 0.919 16 C 0.080 3.920 17 N -0.889 5.889 18 Si 0.876 3.124 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.260 1.260 22 C -0.186 4.186 23 C 0.250 3.750 24 C -0.120 4.120 25 C -0.167 4.167 26 C -0.156 4.156 27 N -0.503 5.503 28 C 0.420 3.580 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.418 0.582 33 H 0.399 0.601 34 H 0.030 0.970 35 H 0.026 0.974 36 H 0.269 0.731 37 H 0.160 0.840 38 H 0.132 0.868 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.894 -0.644 -7.063 20.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.262 5.262 3 C 0.377 3.623 4 O -0.395 6.395 5 N -0.366 5.366 6 C 0.283 3.717 7 O -0.191 6.191 8 C -0.212 4.212 9 C 0.020 3.980 10 C 0.323 3.677 11 O -0.387 6.387 12 N -0.336 5.336 13 C 0.100 3.900 14 C -0.586 4.586 15 H 0.099 0.901 16 C -0.124 4.124 17 N -0.526 5.526 18 Si 0.702 3.298 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.185 1.185 22 C -0.208 4.208 23 C 0.107 3.893 24 C -0.139 4.139 25 C -0.204 4.204 26 C -0.194 4.194 27 N -0.218 5.218 28 C 0.184 3.816 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.276 0.724 33 H 0.233 0.767 34 H 0.048 0.952 35 H 0.044 0.956 36 H 0.079 0.921 37 H 0.178 0.822 38 H 0.150 0.850 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.323 0.779 -7.561 20.764 hybrid contribution 1.191 0.034 -0.035 1.192 sum -18.131 0.814 -7.595 19.675 Atomic orbital electron populations 1.21927 0.75725 1.04780 1.03736 1.46089 1.10153 1.03929 1.66066 1.17127 0.84454 0.82556 0.78164 1.90953 1.65522 1.30804 1.52190 1.69609 1.04949 1.28115 1.33973 1.21665 0.85227 0.87938 0.76892 1.85352 1.13476 1.36626 1.83644 1.19142 0.91996 0.92390 1.17640 1.20604 0.95808 0.91763 0.89874 1.17865 0.84891 0.81217 0.83762 1.90796 1.67934 1.42433 1.37570 1.46154 1.09785 1.48709 1.28974 1.19605 0.74446 0.97609 0.98296 1.21036 0.93299 1.31868 1.12362 0.90130 1.24777 0.98124 0.94480 0.95063 1.69869 1.15125 1.38417 1.29167 0.86838 0.80921 0.79927 0.82121 1.19770 1.20830 1.18458 1.22182 0.94136 0.99047 1.05445 1.20449 0.90093 0.91326 0.87436 1.20895 1.02900 0.88306 1.01766 1.23227 0.98781 0.95700 1.02690 1.23034 1.01397 1.02372 0.92589 1.66834 1.39521 0.96020 1.19458 1.17988 0.85900 0.87131 0.90599 0.91024 0.89101 0.88968 0.72362 0.76675 0.95232 0.95604 0.92121 0.82230 0.85003 0.87605 0.87295 0.87668 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.14 59.84 0.61 1.42 16 2 N -0.54 -7.26 3.04 -128.57 -0.39 -7.65 16 3 C 0.68 11.00 8.30 -88.42 -0.73 10.26 16 4 O -0.52 -9.64 16.60 5.04 0.08 -9.55 16 5 N -0.61 -9.68 10.35 -15.19 -0.16 -9.83 16 6 C 0.49 7.24 8.05 -14.01 -0.11 7.13 16 7 O -0.40 -5.61 9.58 -40.55 -0.39 -6.00 16 8 C -0.20 -2.88 5.91 -104.64 -0.62 -3.50 16 9 C 0.03 0.45 5.70 -104.44 -0.60 -0.15 16 10 C 0.54 9.23 6.22 -12.18 -0.08 9.15 16 11 O -0.51 -10.18 14.53 -18.63 -0.27 -10.45 16 12 N -0.69 -12.36 5.53 -62.32 -0.34 -12.70 16 13 C 0.22 4.93 4.50 -5.19 -0.02 4.90 16 14 C -0.55 -13.93 9.83 -34.44 -0.34 -14.27 16 15 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 16 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.89 -25.16 13.96 55.43 0.77 -24.38 16 18 Si 0.88 20.15 27.47 -169.99 -4.67 15.48 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 22 C -0.19 -2.04 9.11 -38.95 -0.35 -2.39 16 23 C 0.25 2.51 6.46 -82.48 -0.53 1.98 16 24 C -0.12 -0.86 6.20 -91.77 -0.57 -1.43 16 25 C -0.17 -0.99 9.78 -26.69 -0.26 -1.25 16 26 C -0.16 -0.94 10.24 -26.69 -0.27 -1.21 16 27 N -0.50 -5.77 9.13 -8.45 -0.08 -5.85 16 28 C 0.42 5.55 7.37 -155.56 -1.15 4.40 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.92 7.34 -51.93 -0.38 0.54 16 31 H 0.09 0.79 7.43 -51.93 -0.39 0.41 16 32 H 0.42 3.99 8.99 45.56 0.41 4.39 16 33 H 0.40 6.32 8.30 -40.82 -0.34 5.99 16 34 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 35 H 0.03 0.60 7.57 -51.93 -0.39 0.21 16 36 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.16 1.45 6.20 -52.48 -0.33 1.12 16 38 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.11 0.66 6.35 -51.93 -0.33 0.33 16 40 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -34.01 360.44 -8.94 -42.95 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -3.81 Total: 5.45 kcal Atomic # 6 Polarization: 22.23 SS G_CDS: -5.12 Total: 17.10 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.20 Total: -60.43 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.58 Total: -25.99 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.67 Total: 15.48 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.01 -8.94 -42.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914445708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.879 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds