Wall clock time and date at job start Wed Apr 1 2020 03:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34442 * 119.83071 * 2 1 4 4 O 1.21861 * 118.50011 * 359.97438 * 3 2 1 5 5 N 1.33419 * 122.99217 * 180.02562 * 3 2 1 6 6 C 1.32187 * 121.59629 * 359.97438 * 5 3 2 7 7 O 1.34946 * 120.79966 * 179.97438 * 6 5 3 8 8 C 1.46639 * 118.40581 * 359.97438 * 6 5 3 9 9 C 1.40693 * 122.10111 * 180.02562 * 8 6 5 10 10 C 1.48177 * 121.19573 * 0.04060 * 9 8 6 11 11 O 1.21502 * 119.99910 * 306.09286 * 10 9 8 12 12 N 1.34770 * 119.99858 * 126.08977 * 10 9 8 13 13 C 1.46504 * 119.99911 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47103 * 180.02562 * 13 12 10 15 15 H 1.08001 * 120.00160 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99890 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00036 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00166 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47183 * 89.99814 * 18 16 14 20 20 H 1.48503 * 109.46887 * 210.00240 * 18 16 14 21 21 H 1.48498 * 109.46772 * 329.99810 * 18 16 14 22 22 C 1.39437 * 117.60901 * 180.02562 * 9 8 6 23 23 C 1.38733 * 119.32440 * 359.97438 * 22 9 8 24 24 C 1.50700 * 119.13171 * 180.02562 * 23 22 9 25 25 C 1.52999 * 117.49987 * 343.72800 * 24 23 22 26 26 C 1.52995 * 117.49980 * 275.06372 * 24 23 22 27 27 N 1.31665 * 121.72823 * 359.97438 * 23 22 9 28 28 C 1.32350 * 121.76615 * 0.02562 * 27 23 22 29 29 H 1.09001 * 109.47375 * 270.02039 * 1 2 3 30 30 H 1.09002 * 109.47126 * 30.02294 * 1 2 3 31 31 H 1.08998 * 109.47399 * 150.02042 * 1 2 3 32 32 H 0.96701 * 114.00252 * 0.02562 * 7 6 5 33 33 H 0.97005 * 120.00062 * 0.02562 * 12 10 9 34 34 H 1.08995 * 109.47611 * 300.00692 * 13 12 10 35 35 H 1.09005 * 109.46420 * 60.00702 * 13 12 10 36 36 H 0.96998 * 120.00299 * 179.97438 * 17 16 14 37 37 H 1.08003 * 120.33489 * 180.02562 * 22 9 8 38 38 H 1.09002 * 115.54820 * 129.40245 * 24 23 22 39 39 H 1.08999 * 117.50040 * 359.97438 * 25 24 23 40 40 H 1.09004 * 117.49794 * 145.02472 * 25 24 23 41 41 H 1.09001 * 117.50402 * 214.98141 * 26 24 23 42 42 H 1.09004 * 117.50324 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1337 1.1663 0.0000 4 8 1.4939 2.2034 -0.0005 5 7 3.4659 1.2399 -0.0005 6 6 4.2195 0.1539 -0.0005 7 8 5.5657 0.2470 -0.0016 8 6 3.5575 -1.1546 0.0006 9 6 4.2834 -2.3598 0.0012 10 6 5.7652 -2.3632 0.0016 11 8 6.3744 -1.7450 -0.8487 12 7 6.4372 -3.0520 0.9451 13 6 7.9022 -3.0559 0.9452 14 6 8.4023 -3.8940 2.0935 15 1 7.6991 -4.3760 2.7566 16 6 9.7574 -4.0456 2.2975 17 7 10.1939 -4.7774 3.2993 18 14 10.9736 -3.2114 1.1510 19 1 11.2981 -1.8593 1.6724 20 1 12.2150 -4.0224 1.0713 21 1 10.3744 -3.0894 -0.2023 22 6 3.5585 -3.5509 0.0017 23 6 2.1720 -3.5023 0.0021 24 6 1.3927 -4.7922 0.0032 25 6 2.1424 -6.0708 -0.3764 26 6 1.1295 -5.4598 -1.3480 27 7 1.5191 -2.3589 0.0026 28 6 2.1509 -1.1959 0.0021 29 1 -0.3634 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5135 32 1 5.8972 1.1554 -0.0018 33 1 5.9508 -3.5458 1.6238 34 1 8.2646 -3.4737 0.0060 35 1 8.2681 -2.0349 1.0539 36 1 11.1472 -4.8844 3.4426 37 1 4.0711 -4.5015 0.0025 38 1 0.6156 -4.8713 0.7635 39 1 3.1991 -5.9790 -0.6275 40 1 1.8582 -6.9912 0.1337 41 1 0.1795 -5.9784 -1.4767 42 1 1.5196 -4.9658 -2.2380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914445708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:15 Heat of formation + Delta-G solvation = -27.612260 kcal Electronic energy + Delta-G solvation = -29964.377032 eV Core-core repulsion = 25717.696846 eV Total energy + Delta-G solvation = -4246.680186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.31255 -41.33670 -40.47408 -39.82322 -38.31582 -36.71485 -36.21714 -36.03923 -34.51011 -33.89413 -31.67821 -30.04642 -28.59002 -27.16133 -26.03909 -24.86358 -23.88886 -23.25628 -23.10104 -21.42623 -21.29932 -20.27947 -19.41235 -18.74833 -18.31893 -18.03152 -17.82677 -17.24974 -17.01506 -16.83329 -16.37241 -16.11171 -15.87844 -15.80056 -15.72755 -15.18544 -15.12154 -14.82267 -14.45068 -14.30035 -14.18817 -13.86651 -13.47154 -13.14631 -13.05331 -12.69236 -12.34634 -12.23334 -12.20594 -11.92544 -11.88588 -11.67569 -11.60884 -11.41346 -11.30520 -11.28534 -10.96239 -10.88641 -10.69607 -10.00829 -9.74221 -8.36276 -6.43432 -1.29407 -0.53525 0.12740 0.96778 1.36570 1.40286 1.45902 1.50823 1.63749 1.77516 2.05428 2.31192 2.42223 2.47783 2.77672 2.95914 3.00049 3.14960 3.33565 3.44483 3.70031 3.86554 3.95513 4.00737 4.11254 4.17740 4.27546 4.39350 4.46891 4.69506 4.71778 4.81327 4.87158 4.96459 5.06022 5.06811 5.12290 5.21352 5.26496 5.31827 5.38789 5.92445 6.07591 6.26254 6.40926 6.54956 6.68703 6.74108 7.09234 7.26330 8.78147 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.010654 B = 0.003685 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.611136 B = 7596.678294 C = 9691.478913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.534 5.534 3 C 0.671 3.329 4 O -0.556 6.556 5 N -0.629 5.629 6 C 0.494 3.506 7 O -0.409 6.409 8 C -0.218 4.218 9 C 0.020 3.980 10 C 0.549 3.451 11 O -0.540 6.540 12 N -0.687 5.687 13 C 0.234 3.766 14 C -0.545 4.545 15 H 0.061 0.939 16 C 0.028 3.972 17 N -0.931 5.931 18 Si 0.934 3.066 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.253 1.253 22 C -0.170 4.170 23 C 0.260 3.740 24 C -0.130 4.130 25 C -0.161 4.161 26 C -0.150 4.150 27 N -0.494 5.494 28 C 0.415 3.585 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.433 0.567 33 H 0.410 0.590 34 H 0.024 0.976 35 H 0.019 0.981 36 H 0.271 0.729 37 H 0.181 0.819 38 H 0.148 0.852 39 H 0.102 0.898 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.365 -2.140 -7.904 21.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.258 5.258 3 C 0.372 3.628 4 O -0.432 6.432 5 N -0.387 5.387 6 C 0.286 3.714 7 O -0.203 6.203 8 C -0.228 4.228 9 C 0.008 3.992 10 C 0.333 3.667 11 O -0.418 6.418 12 N -0.336 5.336 13 C 0.111 3.889 14 C -0.583 4.583 15 H 0.079 0.921 16 C -0.172 4.172 17 N -0.570 5.570 18 Si 0.757 3.243 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.177 1.177 22 C -0.191 4.191 23 C 0.117 3.883 24 C -0.149 4.149 25 C -0.198 4.198 26 C -0.187 4.187 27 N -0.210 5.210 28 C 0.180 3.820 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.294 0.706 33 H 0.246 0.754 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.198 0.802 38 H 0.165 0.835 39 H 0.121 0.879 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.819 -0.733 -8.402 22.462 hybrid contribution 1.554 0.362 0.238 1.613 sum -19.265 -0.370 -8.164 20.927 Atomic orbital electron populations 1.22152 0.73782 1.05567 1.04834 1.46054 1.11309 1.03401 1.65062 1.17182 0.84562 0.82922 0.78108 1.90919 1.66098 1.31978 1.54212 1.69502 1.05243 1.28986 1.34941 1.21739 0.85249 0.88074 0.76354 1.85323 1.13328 1.38222 1.83434 1.19212 0.92641 0.92181 1.18766 1.20196 0.93678 0.92850 0.92490 1.18126 0.86159 0.79858 0.82556 1.90776 1.69113 1.43345 1.38533 1.45912 1.08270 1.49542 1.29871 1.19212 0.76914 0.96296 0.96505 1.21261 0.93073 1.31355 1.12607 0.92064 1.25554 1.00097 0.95151 0.96413 1.69978 1.15663 1.40287 1.31087 0.85916 0.78833 0.79021 0.80484 1.19298 1.20360 1.17708 1.22463 0.94588 0.98772 1.03284 1.20995 0.90017 0.92061 0.85259 1.21035 1.03598 0.87021 1.03235 1.23349 0.98621 0.95581 1.02285 1.23138 1.02354 1.01688 0.91561 1.66964 1.39212 0.95775 1.19025 1.18031 0.85530 0.87566 0.90869 0.89762 0.89310 0.87139 0.70598 0.75430 0.95832 0.96318 0.91950 0.80160 0.83450 0.87932 0.85565 0.85789 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.46 10.14 127.77 1.30 2.76 16 2 N -0.53 -14.04 3.04 -679.03 -2.06 -16.11 16 3 C 0.67 22.02 8.30 179.58 1.49 23.51 16 4 O -0.56 -20.93 16.60 -4.87 -0.08 -21.01 16 5 N -0.63 -20.28 10.35 -434.17 -4.49 -24.77 16 6 C 0.49 14.60 8.05 86.83 0.70 15.30 16 7 O -0.41 -11.56 9.58 -59.21 -0.57 -12.13 16 8 C -0.22 -6.06 5.91 -19.88 -0.12 -6.18 16 9 C 0.02 0.54 5.70 -19.75 -0.11 0.43 16 10 C 0.55 18.27 6.22 86.89 0.54 18.81 16 11 O -0.54 -21.24 14.53 19.22 0.28 -20.96 16 12 N -0.69 -24.09 5.53 -469.40 -2.60 -26.69 16 13 C 0.23 10.23 4.50 85.63 0.38 10.62 16 14 C -0.55 -27.71 9.83 25.60 0.25 -27.46 16 15 H 0.06 3.28 7.84 -2.91 -0.02 3.26 16 16 C 0.03 1.50 5.47 84.65 0.46 1.97 16 17 N -0.93 -53.14 13.96 21.45 0.30 -52.84 16 18 Si 0.93 41.24 27.47 68.60 1.88 43.12 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 22 C -0.17 -3.29 9.11 22.68 0.21 -3.09 16 23 C 0.26 4.47 6.46 42.70 0.28 4.75 16 24 C -0.13 -1.37 6.20 -11.54 -0.07 -1.45 16 25 C -0.16 -1.30 9.78 30.62 0.30 -1.00 16 26 C -0.15 -1.25 10.24 30.62 0.31 -0.93 16 27 N -0.49 -10.13 9.13 -180.64 -1.65 -11.78 16 28 C 0.42 10.43 7.37 133.86 0.99 11.42 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 1.73 7.34 -2.39 -0.02 1.72 16 31 H 0.11 1.65 7.43 -2.39 -0.02 1.63 16 32 H 0.43 8.44 8.99 -74.06 -0.67 7.78 16 33 H 0.41 12.57 8.30 -92.70 -0.77 11.80 16 34 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 35 H 0.02 0.86 7.57 -2.38 -0.02 0.84 16 36 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 37 H 0.18 2.72 6.20 -2.91 -0.02 2.70 16 38 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.10 0.92 6.35 -2.39 -0.02 0.90 16 40 H 0.13 0.63 8.14 -2.38 -0.02 0.61 16 41 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -73.50 360.44 -2.44 -75.94 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -0.36 Total: 17.76 kcal Atomic # 6 Polarization: 42.57 SS G_CDS: 6.91 Total: 49.48 kcal Atomic # 7 Polarization: -121.69 SS G_CDS: -10.50 Total: -132.20 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: -0.37 Total: -54.10 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 1.88 Total: 43.12 kcal Total: -73.50 -2.44 -75.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914445708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.331 kcal (2) G-P(sol) polarization free energy of solvation -73.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds