Wall clock time and date at job start Wed Apr 1 2020 02:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47058 * 2 1 4 4 C 1.50703 * 109.46880 * 240.00329 * 2 1 3 5 5 O 1.21279 * 120.00054 * 240.00409 * 4 2 1 6 6 N 1.34779 * 119.99951 * 60.00280 * 4 2 1 7 7 C 1.48142 * 127.83722 * 179.97438 * 6 4 2 8 8 C 1.54397 * 104.61412 * 219.60489 * 7 6 4 9 9 H 1.09002 * 110.34226 * 95.00254 * 8 7 6 10 10 C 1.53001 * 110.34022 * 217.26220 * 8 7 6 11 11 F 1.39897 * 109.47041 * 175.53990 * 10 8 7 12 12 F 1.39907 * 109.46916 * 295.53260 * 10 8 7 13 13 F 1.39899 * 109.47665 * 55.53160 * 10 8 7 14 14 C 1.54287 * 104.95976 * 336.12786 * 8 7 6 15 15 H 1.08991 * 110.43298 * 241.08483 * 14 8 7 16 16 N 1.46499 * 110.34031 * 118.87340 * 14 8 7 17 17 C 1.36931 * 120.00122 * 158.00987 * 16 14 8 18 18 H 1.08002 * 120.00098 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00429 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99535 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 180.27849 * 19 17 16 22 22 H 1.48497 * 109.47173 * 179.72427 * 21 19 17 23 23 H 1.48506 * 109.46866 * 299.71963 * 21 19 17 24 24 H 1.48501 * 109.47438 * 59.72083 * 21 19 17 25 25 C 1.48148 * 127.83782 * 359.97237 * 6 4 2 26 26 C 1.53002 * 109.47080 * 120.00724 * 2 1 3 27 27 C 1.53002 * 109.47016 * 294.99647 * 26 2 1 28 28 F 1.39895 * 109.47241 * 54.99797 * 26 2 1 29 29 F 1.39896 * 109.46704 * 175.00038 * 26 2 1 30 30 H 1.08999 * 109.47074 * 59.99244 * 1 2 3 31 31 H 1.08999 * 109.47570 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47177 * 299.99522 * 1 2 3 33 33 H 1.08999 * 110.41048 * 338.38341 * 7 6 4 34 34 H 1.08994 * 110.41171 * 100.70295 * 7 6 4 35 35 H 0.97001 * 119.99790 * 338.00504 * 16 14 8 36 36 H 0.97005 * 119.99717 * 180.02562 * 20 19 17 37 37 H 1.08999 * 110.40547 * 21.60929 * 25 6 4 38 38 H 1.09000 * 110.50546 * 259.23127 * 25 6 4 39 39 H 1.09000 * 109.46997 * 59.99677 * 27 26 2 40 40 H 1.08997 * 109.47401 * 180.02562 * 27 26 2 41 41 H 1.09005 * 109.46847 * 300.00520 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7294 -1.6965 -1.1194 6 7 1.7067 -0.2498 -2.4546 7 6 2.1010 -0.8065 -3.7696 8 6 2.3921 0.4313 -4.6453 9 1 3.4567 0.6646 -4.6297 10 6 1.9201 0.1902 -6.0806 11 9 2.0990 1.3564 -6.8324 12 9 2.6652 -0.8492 -6.6480 13 9 0.5650 -0.1572 -6.0739 14 6 1.5827 1.5752 -3.9996 15 1 0.8490 1.9669 -4.7041 16 7 2.4792 2.6440 -3.5524 17 6 1.9962 3.9127 -3.3732 18 1 0.9541 4.1253 -3.5611 19 6 2.8457 4.9256 -2.9500 20 7 4.1156 4.6663 -2.7204 21 14 2.1850 6.6545 -2.6980 22 1 3.2838 7.5426 -2.2410 23 1 1.6357 7.1661 -3.9794 24 1 1.1102 6.6294 -1.6736 25 6 0.8732 0.9281 -2.7904 26 6 2.0400 -0.7214 1.2492 27 6 1.6353 0.0687 2.4953 28 9 1.4821 -2.0030 1.3080 29 9 3.4342 -0.8218 1.1931 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.9963 -1.4202 -3.6695 34 1 1.2856 -1.3917 -4.1946 35 1 3.4150 2.4529 -3.3832 36 1 4.7092 5.3741 -2.4243 37 1 0.8420 1.6232 -1.9513 38 1 -0.1353 0.6171 -3.0629 39 1 0.5490 0.1470 2.5390 40 1 1.9990 -0.4450 3.3852 41 1 2.0699 1.0673 2.4494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099307166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:51 Heat of formation + Delta-G solvation = -272.133424 kcal Electronic energy + Delta-G solvation = -32672.480155 eV Core-core repulsion = 27422.650809 eV Total energy + Delta-G solvation = -5249.829346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.126 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.94500 -48.77861 -47.45554 -47.35984 -46.74590 -40.01672 -37.70154 -34.81491 -34.12996 -32.07330 -30.75431 -29.72085 -27.73199 -26.13239 -25.20808 -24.26415 -22.55808 -21.35171 -20.44633 -19.46471 -18.35616 -18.04703 -17.92820 -17.51032 -17.01550 -16.80108 -16.55464 -15.85676 -15.39333 -15.12978 -14.67353 -14.42165 -14.27721 -14.04733 -13.85444 -13.76467 -13.71439 -13.53808 -13.49790 -13.44060 -13.37717 -13.14191 -13.00178 -12.76427 -12.60488 -12.28871 -12.17154 -11.97790 -11.92523 -11.76491 -11.59891 -11.27735 -10.99069 -10.94724 -10.90644 -10.75948 -10.28773 -9.93003 -9.69243 -9.25210 -8.62600 -7.24637 -5.97694 -3.30958 2.65936 2.76867 3.05019 3.30821 3.36685 3.38099 3.74069 3.92674 4.00882 4.04502 4.16763 4.32027 4.39719 4.43037 4.75227 4.83560 4.89807 4.99589 5.09445 5.21081 5.26114 5.34943 5.39253 5.47349 5.49618 5.59799 5.59817 5.67380 5.77257 5.86452 5.95292 5.96675 6.03259 6.16944 6.44135 7.49218 7.61481 8.17035 8.21529 9.29951 9.78788 10.14202 11.23365 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.007934 B = 0.005302 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3528.362791 B = 5279.814109 C = 7907.054529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.152 4.152 3 H 0.132 0.868 4 C 0.546 3.454 5 O -0.532 6.532 6 N -0.609 5.609 7 C 0.118 3.882 8 C -0.165 4.165 9 H 0.129 0.871 10 C 0.464 3.536 11 F -0.173 7.173 12 F -0.187 7.187 13 F -0.184 7.184 14 C 0.178 3.822 15 H 0.077 0.923 16 N -0.710 5.710 17 C -0.257 4.257 18 H 0.074 0.926 19 C -0.002 4.002 20 N -0.925 5.925 21 Si 0.909 3.091 22 H -0.290 1.290 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.069 3.931 26 C 0.310 3.690 27 C -0.196 4.196 28 F -0.196 7.196 29 F -0.190 7.190 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.388 0.612 36 H 0.259 0.741 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.483 -9.277 3.007 12.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 H 0.150 0.850 4 C 0.334 3.666 5 O -0.408 6.408 6 N -0.342 5.342 7 C -0.005 4.005 8 C -0.187 4.187 9 H 0.147 0.853 10 C 0.410 3.590 11 F -0.154 7.154 12 F -0.168 7.168 13 F -0.165 7.165 14 C 0.065 3.935 15 H 0.095 0.905 16 N -0.350 5.350 17 C -0.387 4.387 18 H 0.092 0.908 19 C -0.200 4.200 20 N -0.571 5.571 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.057 4.057 26 C 0.273 3.727 27 C -0.253 4.253 28 F -0.177 7.177 29 F -0.171 7.171 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.223 0.777 36 H 0.069 0.931 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.122 -9.692 3.174 13.037 hybrid contribution 0.104 0.900 -0.182 0.924 sum -8.017 -8.792 2.991 12.269 Atomic orbital electron populations 1.21946 0.90698 1.03770 1.04429 1.22391 1.00070 1.03009 0.91942 0.84996 1.19689 0.79919 0.84067 0.82891 1.90758 1.37907 1.26294 1.85851 1.48661 1.51350 1.30155 1.04050 1.22114 1.01997 0.93810 0.82615 1.23864 1.05579 1.00188 0.89039 0.85289 1.20284 0.74998 0.73909 0.89844 1.93236 1.94966 1.48490 1.78702 1.93175 1.76761 1.59625 1.87264 1.93151 1.34187 1.92200 1.96991 1.21050 0.92219 0.87023 0.93185 0.90504 1.42422 1.08467 1.04578 1.79545 1.19139 0.94642 0.85226 1.39701 0.90764 1.24784 0.95521 0.98306 1.01355 1.69656 1.03485 1.32816 1.51103 0.86258 0.77615 0.84142 0.78044 1.21608 1.21011 1.21056 1.23730 0.93602 0.86752 1.01595 1.20627 0.75424 0.80362 0.96278 1.22837 1.04532 1.01953 0.96014 1.92995 1.84978 1.42334 1.97383 1.93053 1.30209 1.96389 1.97411 0.89951 0.91282 0.90598 0.88819 0.90216 0.77745 0.93084 0.88431 0.91311 0.89029 0.89862 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.53 37.16 0.32 -1.24 16 2 C -0.15 -2.06 1.75 -91.77 -0.16 -2.22 16 3 H 0.13 1.78 7.95 -51.93 -0.41 1.37 16 4 C 0.55 9.12 7.04 -10.98 -0.08 9.04 16 5 O -0.53 -10.65 15.09 5.56 0.08 -10.57 16 6 N -0.61 -9.25 3.31 -169.29 -0.56 -9.81 16 7 C 0.12 1.66 6.38 -2.41 -0.02 1.65 16 8 C -0.17 -2.45 2.84 -89.21 -0.25 -2.71 16 9 H 0.13 2.03 7.64 -51.93 -0.40 1.64 16 10 C 0.46 6.62 2.53 37.16 0.09 6.71 16 11 F -0.17 -2.80 16.93 2.25 0.04 -2.77 16 12 F -0.19 -2.59 17.17 2.25 0.04 -2.55 16 13 F -0.18 -2.48 16.05 2.25 0.04 -2.45 16 14 C 0.18 2.98 2.99 -66.52 -0.20 2.79 16 15 H 0.08 1.30 7.37 -51.93 -0.38 0.91 16 16 N -0.71 -15.39 5.14 -52.06 -0.27 -15.66 16 17 C -0.26 -6.25 9.97 -15.06 -0.15 -6.40 16 18 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 19 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 20 N -0.92 -25.76 13.06 55.49 0.72 -25.03 16 21 Si 0.91 20.55 29.55 -169.99 -5.02 15.53 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 C 0.07 0.99 4.97 -2.39 -0.01 0.98 16 26 C 0.31 4.29 1.50 -26.73 -0.04 4.25 16 27 C -0.20 -1.86 9.14 37.16 0.34 -1.52 16 28 F -0.20 -2.99 15.75 2.25 0.04 -2.95 16 29 F -0.19 -3.26 15.82 2.25 0.04 -3.23 16 30 H 0.08 0.82 5.34 -51.93 -0.28 0.55 16 31 H 0.07 0.73 7.69 -51.93 -0.40 0.33 16 32 H 0.08 0.60 6.57 -51.93 -0.34 0.26 16 33 H 0.09 1.36 7.88 -51.93 -0.41 0.95 16 34 H 0.08 1.00 7.22 -51.93 -0.37 0.62 16 35 H 0.39 9.27 7.50 -40.82 -0.31 8.96 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 37 H 0.10 1.48 6.48 -51.93 -0.34 1.15 16 38 H 0.07 0.83 8.01 -51.93 -0.42 0.41 16 39 H 0.09 0.67 6.56 -51.93 -0.34 0.33 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 350.95 15.07 5.29 5.29 Total: -1.00 -30.34 350.95 -4.61 -34.95 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -4.78 Total: 8.08 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -0.25 Total: 11.18 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.10 Total: -50.51 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 9 Polarization: -14.13 SS G_CDS: 0.18 Total: -13.95 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.34 -4.61 -34.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099307166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -237.184 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds