Wall clock time and date at job start Wed Apr 1 2020 02:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.50703 * 109.47171 * 180.02562 * 3 2 1 5 5 N 1.29940 * 126.28912 * 90.02493 * 4 3 2 6 6 O 1.21305 * 110.25415 * 179.97438 * 5 4 3 7 7 C 1.33640 * 109.80822 * 359.97438 * 6 5 4 8 8 C 1.50698 * 126.54873 * 179.97438 * 7 6 5 9 9 H 1.09007 * 109.47062 * 194.98174 * 8 7 6 10 10 C 1.53002 * 109.46948 * 74.98244 * 8 7 6 11 11 N 1.46897 * 109.47434 * 314.98194 * 8 7 6 12 12 C 1.46902 * 110.99997 * 205.00147 * 11 8 7 13 13 C 1.52998 * 109.46901 * 180.02562 * 12 11 8 14 14 N 1.46504 * 109.47211 * 180.02562 * 13 12 11 15 15 C 1.34770 * 120.00503 * 180.02562 * 14 13 12 16 16 O 1.21286 * 119.99595 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00622 * 179.97438 * 15 14 13 18 18 S 1.80995 * 109.47296 * 180.02562 * 17 15 14 19 19 C 1.76200 * 99.99811 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00223 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00096 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99955 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00191 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47062 * 59.99955 * 23 21 19 25 25 H 1.48497 * 109.46982 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46975 * 300.00404 * 23 21 19 27 27 N 1.31131 * 106.89864 * 359.77574 * 7 6 5 28 28 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 29 29 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 31 31 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 32 32 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 33 33 H 1.09006 * 109.46865 * 179.97438 * 10 8 7 34 34 H 1.08995 * 109.46742 * 299.99829 * 10 8 7 35 35 H 1.08997 * 109.46947 * 59.99717 * 10 8 7 36 36 H 1.00894 * 110.99920 * 81.04503 * 11 8 7 37 37 H 1.08993 * 109.46939 * 299.99541 * 12 11 8 38 38 H 1.08999 * 109.47065 * 60.00142 * 12 11 8 39 39 H 1.09007 * 109.47145 * 299.99500 * 13 12 11 40 40 H 1.08996 * 109.47682 * 59.99642 * 13 12 11 41 41 H 0.96998 * 119.99530 * 359.97438 * 14 13 12 42 42 H 1.08998 * 109.46717 * 300.00245 * 17 15 14 43 43 H 1.09003 * 109.46564 * 59.99628 * 17 15 14 44 44 H 0.97004 * 120.00366 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2789 1.1263 -1.0483 6 8 5.4412 1.0345 -0.7137 7 6 5.5295 1.0277 0.6197 8 6 6.7929 0.9274 1.4350 9 1 6.5411 0.6811 2.4666 10 6 7.5324 2.2663 1.3963 11 7 7.6539 -0.1237 0.8767 12 6 8.5566 -0.6645 1.9018 13 6 9.4357 -1.7536 1.2839 14 7 10.3356 -2.2933 2.3062 15 6 11.2078 -3.2704 1.9885 16 8 11.2473 -3.7032 0.8562 17 6 12.1338 -3.8252 3.0400 18 16 13.1747 -5.1127 2.3087 19 6 14.1283 -5.5720 3.7174 20 1 13.9638 -5.0799 4.6646 21 6 15.0908 -6.5663 3.6097 22 7 15.2916 -7.1657 2.4552 23 14 16.1022 -7.0527 5.1030 24 1 15.1985 -7.5428 6.1747 25 1 17.0540 -8.1288 4.7270 26 1 16.8584 -5.8729 5.5944 27 7 4.3070 1.1292 1.0832 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 8.4461 2.1939 1.9864 34 1 7.7841 2.5126 0.3648 35 1 6.8935 3.0463 1.8106 36 1 8.1728 0.2182 0.0819 37 1 9.1878 0.1355 2.2885 38 1 7.9691 -1.0895 2.7156 39 1 8.8047 -2.5537 0.8968 40 1 10.0232 -1.3283 0.4702 41 1 10.3042 -1.9469 3.2117 42 1 12.7644 -3.0251 3.4274 43 1 11.5462 -4.2509 3.8534 44 1 15.9640 -7.8608 2.3800 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792241.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:44 Heat of formation + Delta-G solvation = -7.684691 kcal Electronic energy + Delta-G solvation = -25845.811560 eV Core-core repulsion = 21735.439449 eV Total energy + Delta-G solvation = -4110.372110 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.135 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.00824 -39.28130 -38.58659 -38.08878 -36.15518 -34.92422 -33.03430 -32.42644 -31.17227 -29.47689 -29.12072 -27.15536 -26.47715 -25.48862 -25.04399 -23.73117 -22.53888 -21.32742 -20.38092 -18.60366 -18.09583 -17.82947 -16.94433 -16.85953 -16.45028 -16.10776 -16.07964 -16.02775 -15.78151 -14.99863 -14.96347 -14.79833 -13.97767 -13.91998 -13.60592 -13.43080 -13.26482 -13.15605 -12.83115 -12.71722 -12.52375 -12.40234 -12.36115 -12.12614 -11.92446 -11.79246 -11.53808 -11.45650 -11.04463 -11.03596 -10.77043 -10.44342 -10.38554 -9.82646 -9.44394 -9.19913 -9.06318 -8.92577 -8.23898 -6.49954 -6.21179 -3.92045 0.71575 1.61027 2.35481 2.74342 2.96595 3.08636 3.20587 3.23720 3.28670 3.35478 3.62453 3.74351 3.97042 4.20639 4.21014 4.22770 4.46403 4.54304 4.62208 4.71413 4.76752 4.78118 4.89672 4.98587 5.03534 5.10598 5.13895 5.14783 5.17124 5.22502 5.42818 5.52496 5.58999 5.69600 5.82072 5.88970 6.12897 6.20303 6.41217 6.54645 6.68203 7.59289 7.66131 7.73947 8.35114 8.59269 9.23908 10.86171 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.023973 B = 0.001398 C = 0.001369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.692826 B =20018.114899 C =20449.560843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.157 3.843 4 C 0.166 3.834 5 N -0.365 5.365 6 O 0.096 5.904 7 C 0.203 3.797 8 C 0.181 3.819 9 H 0.127 0.873 10 C -0.185 4.185 11 N -0.681 5.681 12 C 0.051 3.949 13 C 0.122 3.878 14 N -0.739 5.739 15 C 0.532 3.468 16 O -0.515 6.515 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 N -0.470 5.470 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.357 0.643 37 H 0.047 0.953 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.398 0.602 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.515 23.733 -0.717 34.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C 0.079 3.921 4 C -0.107 4.107 5 N -0.071 5.071 6 O 0.033 5.967 7 C -0.019 4.019 8 C 0.068 3.932 9 H 0.145 0.855 10 C -0.244 4.244 11 N -0.314 5.314 12 C -0.078 4.078 13 C -0.003 4.003 14 N -0.395 5.395 15 C 0.318 3.682 16 O -0.389 6.389 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.200 1.200 27 N -0.204 5.204 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.178 0.822 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.231 0.769 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -26.391 22.239 -3.172 34.657 hybrid contribution 1.063 1.229 2.799 3.237 sum -25.328 23.468 -0.373 34.531 Atomic orbital electron populations 1.22831 0.79479 1.03624 1.00428 1.87963 1.20724 1.25957 1.95540 1.20380 0.82515 0.86356 1.02883 1.25291 0.99129 1.02543 0.83772 1.74656 0.89732 1.18876 1.23826 1.85310 1.22176 1.64351 1.24855 1.28673 0.96433 0.94850 0.81935 1.19947 0.84894 0.92151 0.96181 0.85493 1.22561 1.01529 0.96320 1.04036 1.60129 1.25886 1.35115 1.10269 1.22163 0.94197 0.96921 0.94476 1.21118 0.91726 0.96274 0.91189 1.45869 1.39464 1.40607 1.13525 1.20301 0.79940 0.78387 0.89535 1.90719 1.68317 1.58207 1.21610 1.23528 1.01175 1.04825 1.00857 1.85420 1.41311 1.40630 1.15948 1.22829 1.23673 1.25126 0.96900 0.90970 1.24985 0.96449 0.95190 0.96887 1.70005 1.32575 1.23905 1.23775 0.86228 0.79456 0.78250 0.81584 1.19939 1.20806 1.19953 1.71829 0.99538 1.19810 1.29267 0.93538 0.88870 0.93418 0.90235 0.89737 0.89994 0.90994 0.90767 0.82250 0.93492 0.89625 0.90494 0.91483 0.76853 0.89207 0.89163 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.58 10.69 -35.23 -0.38 -3.96 16 3 C 0.16 1.21 6.56 36.01 0.24 1.44 16 4 C 0.17 1.75 7.85 -156.37 -1.23 0.53 16 5 N -0.37 -4.19 12.16 30.90 0.38 -3.82 16 6 O 0.10 0.98 11.31 18.11 0.20 1.19 16 7 C 0.20 1.80 7.35 -13.06 -0.10 1.71 16 8 C 0.18 1.03 3.13 -68.87 -0.22 0.81 16 9 H 0.13 0.64 7.80 -51.93 -0.40 0.23 16 10 C -0.18 -0.67 9.14 37.16 0.34 -0.33 16 11 N -0.68 -4.41 6.23 -107.95 -0.67 -5.08 16 12 C 0.05 0.32 5.60 -3.82 -0.02 0.30 16 13 C 0.12 1.25 5.93 -4.04 -0.02 1.23 16 14 N -0.74 -8.95 5.56 -60.29 -0.33 -9.28 16 15 C 0.53 9.61 7.85 -10.99 -0.09 9.52 16 16 O -0.51 -11.56 15.86 5.55 0.09 -11.47 16 17 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 20 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 23 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 N -0.47 -4.94 11.55 -9.87 -0.11 -5.05 16 28 H 0.05 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.22 7.45 -51.93 -0.39 -0.17 16 34 H 0.07 0.25 8.13 -51.93 -0.42 -0.17 16 35 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.36 1.99 8.47 -39.29 -0.33 1.66 16 37 H 0.05 0.22 7.44 -51.93 -0.39 -0.17 16 38 H 0.09 0.51 8.05 -51.93 -0.42 0.09 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.40 3.49 8.47 -40.82 -0.35 3.14 16 42 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 43 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 396.94 15.07 5.98 5.98 Total: -1.00 -37.89 396.94 -7.38 -45.27 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.47 Total: -1.66 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 0.44 Total: 0.82 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -0.01 Total: -48.58 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.08 Total: -14.25 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.89 -7.38 -45.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792241.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.589 kcal (2) G-P(sol) polarization free energy of solvation -37.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds