Wall clock time and date at job start Wed Apr 1 2020 03:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.47130 * 2 1 4 4 C 1.34227 * 116.99816 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00413 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99694 * 179.97438 * 4 3 2 7 7 N 1.46906 * 109.47068 * 174.23741 * 6 4 3 8 8 C 1.46905 * 110.99853 * 287.87595 * 7 6 4 9 9 C 1.50702 * 109.47277 * 295.48045 * 8 7 6 10 10 H 1.07997 * 119.99906 * 5.26401 * 9 8 7 11 11 C 1.37869 * 119.99737 * 185.25567 * 9 8 7 12 12 N 1.31520 * 120.00254 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99872 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47227 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46977 * 120.00473 * 13 11 9 16 16 H 1.48496 * 109.47144 * 240.00399 * 13 11 9 17 17 C 1.46901 * 111.00052 * 163.92704 * 7 6 4 18 18 C 1.50695 * 109.47208 * 189.99918 * 17 7 6 19 19 C 1.38833 * 120.75988 * 270.21872 * 18 17 7 20 20 C 1.38041 * 119.28860 * 180.29683 * 19 18 17 21 21 N 1.31965 * 120.83697 * 359.72672 * 20 19 18 22 22 C 1.32243 * 121.64875 * 359.97438 * 21 20 19 23 23 O 1.35681 * 119.68693 * 179.97438 * 22 21 20 24 24 C 1.42895 * 116.99628 * 0.02562 * 23 22 21 25 25 F 1.39897 * 109.47500 * 300.00029 * 24 23 22 26 26 F 1.39904 * 109.47288 * 60.00234 * 24 23 22 27 27 C 1.38384 * 120.75724 * 89.99634 * 18 17 7 28 28 H 1.09005 * 109.46874 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46864 * 299.99959 * 1 2 3 30 30 H 1.08993 * 109.47163 * 60.00459 * 1 2 3 31 31 H 1.09004 * 109.47507 * 239.99440 * 2 1 3 32 32 H 1.09007 * 109.47180 * 119.99751 * 2 1 3 33 33 H 1.09001 * 109.47614 * 54.24150 * 6 4 3 34 34 H 1.09001 * 109.47573 * 294.23555 * 6 4 3 35 35 H 1.09002 * 109.46559 * 55.48165 * 8 7 6 36 36 H 1.08999 * 109.47027 * 175.48283 * 8 7 6 37 37 H 0.96997 * 119.99815 * 179.97438 * 12 11 9 38 38 H 1.08997 * 109.47657 * 69.99475 * 17 7 6 39 39 H 1.09009 * 109.46936 * 309.99810 * 17 7 6 40 40 H 1.08003 * 120.35231 * 0.04423 * 19 18 17 41 41 H 1.08004 * 119.58407 * 179.75026 * 20 19 18 42 42 H 1.09005 * 109.46669 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.44230 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9206 2.9374 -0.0012 7 7 5.3813 2.8632 0.1374 8 6 5.7614 2.4670 1.5000 9 6 5.3305 3.5347 2.4723 10 1 4.7507 4.3777 2.1266 11 6 5.6763 3.4352 3.8032 12 7 6.3827 2.4087 4.2242 13 14 5.1416 4.7583 5.0086 14 1 4.3624 5.7978 4.2891 15 1 4.2959 4.1507 6.0674 16 1 6.3408 5.3778 5.6276 17 6 6.0108 4.1371 -0.2352 18 6 7.5043 3.9540 -0.3186 19 6 8.3072 4.1514 0.7966 20 6 9.6725 3.9813 0.6845 21 7 10.2182 3.6297 -0.4644 22 6 9.4863 3.4267 -1.5470 23 8 10.0892 3.0666 -2.7080 24 6 11.5110 2.9262 -2.6841 25 9 12.0940 4.1446 -2.3200 26 9 11.8670 1.9428 -1.7549 27 6 8.1062 3.5807 -1.5075 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.5049 3.5030 0.8327 34 1 3.6694 3.4341 -0.9383 35 1 5.2736 1.5259 1.7540 36 1 6.8428 2.3418 1.5536 37 1 6.6263 2.3390 5.1605 38 1 5.7786 4.8910 0.5170 39 1 5.6298 4.4610 -1.2039 40 1 7.8687 4.4390 1.7408 41 1 10.3020 4.1376 1.5480 42 1 11.8639 2.6354 -3.6736 43 1 7.5115 3.4157 -2.3937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237613607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:12 Heat of formation + Delta-G solvation = -186.280038 kcal Electronic energy + Delta-G solvation = -30512.033108 eV Core-core repulsion = 25807.783385 eV Total energy + Delta-G solvation = -4704.249723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.138 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.92320 -47.05050 -40.31368 -39.91270 -37.97648 -36.89913 -35.73046 -32.85753 -32.29579 -31.55871 -30.34588 -28.08176 -27.43262 -26.00603 -24.65813 -23.28851 -22.99287 -22.14570 -20.94985 -19.84454 -18.46252 -18.14138 -17.70724 -17.28507 -16.68008 -16.30910 -15.90942 -15.68725 -15.43185 -15.23335 -15.00494 -14.81215 -14.49348 -14.19810 -13.88529 -13.74412 -13.47484 -13.36931 -13.20945 -12.86264 -12.75859 -12.45325 -12.25622 -12.15659 -12.07159 -11.91979 -11.62731 -11.41717 -11.32622 -11.07612 -10.99187 -10.89203 -10.53316 -10.22008 -10.14139 -9.81907 -9.74074 -9.30062 -9.21483 -8.54869 -8.28817 -7.42643 -6.13397 -4.24910 1.52595 1.60758 2.62817 2.84003 3.03598 3.18483 3.28478 3.28953 3.62537 4.08845 4.29606 4.39270 4.66249 4.83025 4.91331 5.02745 5.06432 5.16692 5.21987 5.24196 5.32427 5.39338 5.45731 5.62740 5.67504 5.80238 5.84628 5.89539 5.99665 6.01856 6.08574 6.29949 6.39050 6.62259 6.85252 6.88613 7.03538 7.26964 7.44407 7.74794 7.82261 7.99944 8.12221 8.12564 8.41389 8.85260 9.42223 10.91296 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.009290 B = 0.003518 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.336379 B = 7956.416041 C =10171.152392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.368 6.368 4 C 0.465 3.535 5 O -0.487 6.487 6 C 0.068 3.932 7 N -0.523 5.523 8 C 0.180 3.820 9 C -0.560 4.560 10 H 0.059 0.941 11 C 0.071 3.929 12 N -0.880 5.880 13 Si 0.884 3.116 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.282 1.282 17 C 0.098 3.902 18 C 0.012 3.988 19 C -0.159 4.159 20 C 0.128 3.872 21 N -0.529 5.529 22 C 0.286 3.714 23 O -0.322 6.322 24 C 0.425 3.575 25 F -0.197 7.197 26 F -0.194 7.194 27 C -0.158 4.158 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.036 0.964 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.154 0.846 41 H 0.158 0.842 42 H 0.171 0.829 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.553 1.933 -12.866 13.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.286 6.286 4 C 0.307 3.693 5 O -0.371 6.371 6 C -0.061 4.061 7 N -0.248 5.248 8 C 0.055 3.945 9 C -0.599 4.599 10 H 0.077 0.923 11 C -0.133 4.133 12 N -0.518 5.518 13 Si 0.712 3.288 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.208 1.208 17 C -0.029 4.029 18 C 0.004 3.996 19 C -0.179 4.179 20 C -0.027 4.027 21 N -0.251 5.251 22 C 0.108 3.892 23 O -0.235 6.235 24 C 0.335 3.665 25 F -0.179 7.179 26 F -0.176 7.176 27 C -0.179 4.179 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.172 0.828 41 H 0.175 0.825 42 H 0.187 0.813 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.726 0.991 -13.288 13.345 hybrid contribution -1.093 1.050 1.756 2.319 sum -0.367 2.040 -11.532 11.717 Atomic orbital electron populations 1.21781 0.93148 1.02511 1.03290 1.22887 0.94844 0.81072 1.02368 1.86475 1.25518 1.31642 1.84962 1.23758 0.79816 0.93228 0.72523 1.90646 1.60012 1.42900 1.43565 1.21416 0.91144 0.89954 1.03566 1.62258 1.04039 1.27493 1.31031 1.19969 0.98143 0.96067 0.80318 1.21703 1.35732 1.08554 0.93906 0.92299 1.24921 0.94711 0.95440 0.98234 1.69971 1.36925 1.28911 1.15979 0.86665 0.78625 0.81987 0.81528 1.19719 1.20963 1.20799 1.20910 0.88717 0.92749 1.00569 1.19959 0.96190 0.92046 0.91422 1.22312 0.94011 1.01121 1.00451 1.22315 0.93283 0.93916 0.93193 1.67235 1.40461 1.17449 0.99937 1.19481 0.89459 0.95517 0.84698 1.86739 1.21268 1.83601 1.31898 1.23002 0.77929 0.73988 0.91630 1.93084 1.84205 1.46754 1.93841 1.93106 1.91405 1.62470 1.70642 1.20856 0.91096 1.05716 1.00268 0.90665 0.91537 0.91747 0.91683 0.91402 0.89292 0.88547 0.94549 0.93686 0.92666 0.91323 0.91161 0.82795 0.82475 0.81260 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 37.16 0.38 -1.11 16 2 C 0.06 0.85 6.19 37.16 0.23 1.08 16 3 O -0.37 -6.06 10.22 -39.25 -0.40 -6.46 16 4 C 0.47 8.84 7.54 36.00 0.27 9.12 16 5 O -0.49 -10.86 14.90 -18.75 -0.28 -11.14 16 6 C 0.07 1.20 5.42 -4.97 -0.03 1.17 16 7 N -0.52 -10.44 4.29 -238.95 -1.03 -11.46 16 8 C 0.18 4.39 4.43 -4.97 -0.02 4.37 16 9 C -0.56 -13.81 6.85 -34.44 -0.24 -14.05 16 10 H 0.06 1.39 5.97 -52.49 -0.31 1.08 16 11 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 12 N -0.88 -24.56 13.29 55.43 0.74 -23.83 16 13 Si 0.88 19.91 29.54 -169.99 -5.02 14.89 16 14 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 C 0.10 1.66 4.94 -4.98 -0.02 1.64 16 18 C 0.01 0.21 4.90 -104.35 -0.51 -0.30 16 19 C -0.16 -2.90 8.12 -39.43 -0.32 -3.22 16 20 C 0.13 2.23 11.17 -17.57 -0.20 2.03 16 21 N -0.53 -9.56 8.08 -13.33 -0.11 -9.67 16 22 C 0.29 4.93 7.19 -17.12 -0.12 4.80 16 23 O -0.32 -4.74 10.41 -18.74 -0.20 -4.94 16 24 C 0.42 5.15 6.06 101.05 0.61 5.76 16 25 F -0.20 -2.75 16.57 2.25 0.04 -2.71 16 26 F -0.19 -2.90 16.57 2.25 0.04 -2.87 16 27 C -0.16 -2.63 9.75 -39.27 -0.38 -3.01 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.09 1.62 6.40 -51.93 -0.33 1.29 16 34 H 0.10 1.33 7.81 -51.93 -0.41 0.92 16 35 H 0.04 1.02 6.58 -51.93 -0.34 0.68 16 36 H 0.05 1.20 6.21 -51.93 -0.32 0.88 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.07 1.22 6.32 -51.93 -0.33 0.89 16 39 H 0.07 0.97 7.82 -51.92 -0.41 0.57 16 40 H 0.15 3.03 7.58 -52.48 -0.40 2.63 16 41 H 0.16 2.38 8.06 -52.48 -0.42 1.96 16 42 H 0.17 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 371.44 15.07 5.60 5.60 Total: -1.00 -32.40 371.44 -6.43 -38.83 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.36 Total: 3.73 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -0.45 Total: 10.03 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: -0.40 Total: -44.96 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.88 Total: -22.54 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 0.07 Total: -5.58 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.40 -6.43 -38.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237613607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.449 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds