Wall clock time and date at job start Wed Apr 1 2020 03:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.47130 * 2 1 4 4 C 1.34227 * 116.99816 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00413 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99694 * 179.97438 * 4 3 2 7 7 N 1.46906 * 109.47068 * 174.23741 * 6 4 3 8 8 C 1.46905 * 110.99853 * 287.87595 * 7 6 4 9 9 C 1.50702 * 109.47277 * 295.48045 * 8 7 6 10 10 H 1.07997 * 119.99906 * 5.26401 * 9 8 7 11 11 C 1.37869 * 119.99737 * 185.25567 * 9 8 7 12 12 N 1.31520 * 120.00254 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99872 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47227 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46977 * 120.00473 * 13 11 9 16 16 H 1.48496 * 109.47144 * 240.00399 * 13 11 9 17 17 C 1.46901 * 111.00052 * 163.92704 * 7 6 4 18 18 C 1.50695 * 109.47208 * 189.99918 * 17 7 6 19 19 C 1.38833 * 120.75988 * 270.21872 * 18 17 7 20 20 C 1.38041 * 119.28860 * 180.29683 * 19 18 17 21 21 N 1.31965 * 120.83697 * 359.72672 * 20 19 18 22 22 C 1.32243 * 121.64875 * 359.97438 * 21 20 19 23 23 O 1.35681 * 119.68693 * 179.97438 * 22 21 20 24 24 C 1.42895 * 116.99628 * 0.02562 * 23 22 21 25 25 F 1.39897 * 109.47500 * 300.00029 * 24 23 22 26 26 F 1.39904 * 109.47288 * 60.00234 * 24 23 22 27 27 C 1.38384 * 120.75724 * 89.99634 * 18 17 7 28 28 H 1.09005 * 109.46874 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46864 * 299.99959 * 1 2 3 30 30 H 1.08993 * 109.47163 * 60.00459 * 1 2 3 31 31 H 1.09004 * 109.47507 * 239.99440 * 2 1 3 32 32 H 1.09007 * 109.47180 * 119.99751 * 2 1 3 33 33 H 1.09001 * 109.47614 * 54.24150 * 6 4 3 34 34 H 1.09001 * 109.47573 * 294.23555 * 6 4 3 35 35 H 1.09002 * 109.46559 * 55.48165 * 8 7 6 36 36 H 1.08999 * 109.47027 * 175.48283 * 8 7 6 37 37 H 0.96997 * 119.99815 * 179.97438 * 12 11 9 38 38 H 1.08997 * 109.47657 * 69.99475 * 17 7 6 39 39 H 1.09009 * 109.46936 * 309.99810 * 17 7 6 40 40 H 1.08003 * 120.35231 * 0.04423 * 19 18 17 41 41 H 1.08004 * 119.58407 * 179.75026 * 20 19 18 42 42 H 1.09005 * 109.46669 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.44230 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9206 2.9374 -0.0012 7 7 5.3813 2.8632 0.1374 8 6 5.7614 2.4670 1.5000 9 6 5.3305 3.5347 2.4723 10 1 4.7507 4.3777 2.1266 11 6 5.6763 3.4352 3.8032 12 7 6.3827 2.4087 4.2242 13 14 5.1416 4.7583 5.0086 14 1 4.3624 5.7978 4.2891 15 1 4.2959 4.1507 6.0674 16 1 6.3408 5.3778 5.6276 17 6 6.0108 4.1371 -0.2352 18 6 7.5043 3.9540 -0.3186 19 6 8.3072 4.1514 0.7966 20 6 9.6725 3.9813 0.6845 21 7 10.2182 3.6297 -0.4644 22 6 9.4863 3.4267 -1.5470 23 8 10.0892 3.0666 -2.7080 24 6 11.5110 2.9262 -2.6841 25 9 12.0940 4.1446 -2.3200 26 9 11.8670 1.9428 -1.7549 27 6 8.1062 3.5807 -1.5075 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.5049 3.5030 0.8327 34 1 3.6694 3.4341 -0.9383 35 1 5.2736 1.5259 1.7540 36 1 6.8428 2.3418 1.5536 37 1 6.6263 2.3390 5.1605 38 1 5.7786 4.8910 0.5170 39 1 5.6298 4.4610 -1.2039 40 1 7.8687 4.4390 1.7408 41 1 10.3020 4.1376 1.5480 42 1 11.8639 2.6354 -3.6736 43 1 7.5115 3.4157 -2.3937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237613607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:11 Heat of formation + Delta-G solvation = -208.596475 kcal Electronic energy + Delta-G solvation = -30513.000821 eV Core-core repulsion = 25807.783385 eV Total energy + Delta-G solvation = -4705.217437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.138 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.96401 -48.11045 -41.65007 -41.33271 -39.27330 -38.30183 -37.22175 -34.68721 -33.80480 -32.61178 -31.65624 -29.70304 -28.99708 -27.14061 -26.24642 -24.71704 -24.22870 -23.46935 -22.30288 -21.37369 -19.74772 -19.22171 -18.78255 -18.76478 -18.36310 -17.67576 -17.25452 -17.12846 -16.82349 -16.59595 -16.43716 -16.29955 -15.82143 -15.70307 -15.17689 -14.89170 -14.82556 -14.72310 -14.44818 -14.12945 -14.00392 -13.66267 -13.56273 -13.42067 -13.21030 -13.17246 -13.03243 -12.91806 -12.75685 -12.56844 -12.48617 -12.43415 -12.25894 -11.96287 -11.67048 -11.45455 -11.30255 -10.67059 -10.61000 -10.57267 -9.63972 -9.07543 -8.11055 -6.30579 0.18330 0.23221 1.36444 1.39704 1.43315 1.52422 1.57168 1.74845 2.40026 2.68803 2.73372 3.15978 3.26198 3.45079 3.72841 3.84193 3.86215 3.92740 4.00039 4.02428 4.14926 4.15760 4.30218 4.36038 4.38337 4.60551 4.63932 4.71550 4.87928 4.91974 4.95396 5.00222 5.17086 5.21488 5.31575 5.42047 5.50563 5.55104 5.81218 5.95105 5.96717 6.18930 6.33560 6.76985 6.89334 6.96618 7.41181 8.92376 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.009290 B = 0.003518 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.336379 B = 7956.416041 C =10171.152392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 O -0.364 6.364 4 C 0.464 3.536 5 O -0.529 6.529 6 C 0.068 3.932 7 N -0.532 5.532 8 C 0.203 3.797 9 C -0.549 4.549 10 H 0.073 0.927 11 C 0.019 3.981 12 N -0.925 5.925 13 Si 0.949 3.051 14 H -0.256 1.256 15 H -0.289 1.289 16 H -0.282 1.282 17 C 0.100 3.900 18 C 0.003 3.997 19 C -0.172 4.172 20 C 0.121 3.879 21 N -0.543 5.543 22 C 0.278 3.722 23 O -0.321 6.321 24 C 0.415 3.585 25 F -0.209 7.209 26 F -0.214 7.214 27 C -0.157 4.157 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.146 0.854 35 H -0.010 1.010 36 H 0.015 0.985 37 H 0.262 0.738 38 H 0.062 0.938 39 H 0.114 0.886 40 H 0.134 0.866 41 H 0.171 0.829 42 H 0.238 0.762 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 3.313 -14.943 15.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.021 4.021 3 O -0.281 6.281 4 C 0.307 3.693 5 O -0.418 6.418 6 C -0.061 4.061 7 N -0.256 5.256 8 C 0.077 3.923 9 C -0.588 4.588 10 H 0.091 0.909 11 C -0.181 4.181 12 N -0.564 5.564 13 Si 0.775 3.225 14 H -0.180 1.180 15 H -0.216 1.216 16 H -0.207 1.207 17 C -0.026 4.026 18 C -0.005 4.005 19 C -0.193 4.193 20 C -0.034 4.034 21 N -0.266 5.266 22 C 0.100 3.900 23 O -0.234 6.234 24 C 0.326 3.674 25 F -0.191 7.191 26 F -0.196 7.196 27 C -0.178 4.178 28 H 0.118 0.882 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.163 0.837 35 H 0.008 0.992 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.132 0.868 40 H 0.152 0.848 41 H 0.189 0.811 42 H 0.253 0.747 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.641 2.400 -15.393 15.592 hybrid contribution -0.672 0.554 2.302 2.462 sum -1.313 2.954 -13.091 13.484 Atomic orbital electron populations 1.21796 0.89823 1.04342 1.03818 1.23222 0.97400 0.79669 1.01840 1.86473 1.24063 1.33336 1.84268 1.24144 0.80359 0.93420 0.71355 1.90633 1.61120 1.44278 1.45720 1.21589 0.89288 0.89391 1.05822 1.62069 1.05971 1.29580 1.27971 1.19436 0.95645 0.94182 0.83070 1.21949 1.34579 1.08465 0.93840 0.90887 1.25718 0.94845 0.97287 1.00241 1.70120 1.38868 1.31223 1.16191 0.85640 0.78112 0.79650 0.79107 1.17952 1.21585 1.20742 1.21026 0.88221 0.90913 1.02471 1.20115 0.96647 0.92166 0.91595 1.22198 0.94609 1.02412 1.00077 1.22532 0.93319 0.93746 0.93758 1.67286 1.40969 1.18006 1.00312 1.19789 0.90081 0.94964 0.85159 1.86746 1.22894 1.83185 1.30533 1.24163 0.76575 0.73040 0.93641 1.93056 1.84244 1.47678 1.94153 1.93068 1.91439 1.63226 1.71847 1.21088 0.91233 1.04800 1.00634 0.88191 0.91666 0.90486 0.91224 0.93092 0.89690 0.83679 0.99156 0.96714 0.92922 0.91997 0.86841 0.84844 0.81146 0.74696 0.81947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 10.29 71.98 0.74 -1.75 16 2 C 0.05 1.40 6.19 71.98 0.45 1.84 16 3 O -0.36 -11.66 10.22 -51.39 -0.53 -12.19 16 4 C 0.46 17.49 7.54 71.24 0.54 18.03 16 5 O -0.53 -24.23 14.90 21.95 0.33 -23.90 16 6 C 0.07 2.26 5.42 85.55 0.46 2.72 16 7 N -0.53 -20.87 4.29 -909.91 -3.91 -24.78 16 8 C 0.20 10.21 4.43 85.56 0.38 10.59 16 9 C -0.55 -27.35 6.85 25.60 0.18 -27.17 16 10 H 0.07 3.37 5.97 -2.91 -0.02 3.36 16 11 C 0.02 1.00 5.46 84.65 0.46 1.47 16 12 N -0.92 -53.53 13.29 21.45 0.28 -53.24 16 13 Si 0.95 41.13 29.54 68.60 2.03 43.15 16 14 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 15 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 17 C 0.10 3.23 4.94 85.56 0.42 3.65 16 18 C 0.00 0.11 4.90 -19.69 -0.10 0.01 16 19 C -0.17 -6.47 8.12 22.37 0.18 -6.29 16 20 C 0.12 4.32 11.17 84.63 0.95 5.27 16 21 N -0.54 -19.63 8.08 -308.95 -2.50 -22.12 16 22 C 0.28 9.31 7.19 84.79 0.61 9.92 16 23 O -0.32 -8.83 10.41 -89.99 -0.94 -9.76 16 24 C 0.41 9.16 6.06 113.37 0.69 9.85 16 25 F -0.21 -5.55 16.57 44.97 0.75 -4.81 16 26 F -0.21 -6.18 16.57 44.97 0.75 -5.43 16 27 C -0.16 -4.98 9.75 22.47 0.22 -4.77 16 28 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.78 8.13 -2.39 -0.02 1.77 16 32 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.09 2.95 6.40 -2.39 -0.02 2.94 16 34 H 0.15 3.40 7.81 -2.39 -0.02 3.39 16 35 H -0.01 -0.58 6.58 -2.39 -0.02 -0.59 16 36 H 0.01 0.83 6.21 -2.39 -0.01 0.81 16 37 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 38 H 0.06 2.09 6.32 -2.39 -0.02 2.08 16 39 H 0.11 2.68 7.82 -2.38 -0.02 2.67 16 40 H 0.13 5.52 7.58 -2.91 -0.02 5.49 16 41 H 0.17 5.37 8.06 -2.91 -0.02 5.34 16 42 H 0.24 1.96 8.14 -2.38 -0.02 1.94 16 43 H 0.16 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -74.04 371.44 3.49 -70.56 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 1.05 Total: 19.17 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 6.17 Total: 23.36 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -6.12 Total: -100.14 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -1.14 Total: -45.86 kcal Atomic # 9 Polarization: -11.73 SS G_CDS: 1.49 Total: -10.24 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Total: -74.04 3.49 -70.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237613607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.038 kcal (2) G-P(sol) polarization free energy of solvation -74.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds