Wall clock time and date at job start Wed Apr 1 2020 02:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 N 1.46500 * 109.47177 * 65.00225 * 4 2 1 6 6 C 1.34778 * 120.00010 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00275 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.99954 * 179.97438 * 6 5 4 9 9 S 1.80994 * 109.46938 * 179.97438 * 8 6 5 10 10 C 1.76203 * 99.99996 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99336 * 359.97438 * 10 9 8 12 12 C 1.38793 * 120.00325 * 180.02562 * 10 9 8 13 13 N 1.31631 * 120.00450 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 119.99864 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.46677 * 89.99893 * 14 12 10 16 16 H 1.48496 * 109.47305 * 209.99746 * 14 12 10 17 17 H 1.48500 * 109.47448 * 330.00274 * 14 12 10 18 18 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 19 19 N 1.46494 * 109.47140 * 295.00115 * 18 2 1 20 20 C 1.34779 * 119.99805 * 180.02562 * 19 18 2 21 21 O 1.21281 * 120.00027 * 359.97438 * 20 19 18 22 22 C 1.50702 * 120.00010 * 179.97438 * 20 19 18 23 23 H 1.09001 * 110.49179 * 40.70177 * 22 20 19 24 24 C 1.54097 * 110.55168 * 277.99746 * 22 20 19 25 25 N 1.47389 * 103.70616 * 241.44338 * 24 22 20 26 26 C 1.33951 * 109.20587 * 359.88333 * 25 24 22 27 27 O 1.21592 * 123.03715 * 180.02562 * 26 25 24 28 28 N 1.33947 * 113.91758 * 0.07666 * 26 25 24 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46738 * 184.99930 * 4 2 1 33 33 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 34 34 H 0.97003 * 120.00376 * 359.97438 * 5 4 2 35 35 H 1.08990 * 109.46967 * 300.00350 * 8 6 5 36 36 H 1.09003 * 109.46447 * 60.00072 * 8 6 5 37 37 H 0.96996 * 120.00376 * 180.02562 * 13 12 10 38 38 H 1.09006 * 109.47396 * 55.00290 * 18 2 1 39 39 H 1.09001 * 109.46992 * 174.99449 * 18 2 1 40 40 H 0.96995 * 120.00545 * 359.97438 * 19 18 2 41 41 H 1.09004 * 110.54872 * 359.97438 * 24 22 20 42 42 H 1.08997 * 110.55290 * 122.80882 * 24 22 20 43 43 H 0.96991 * 125.38226 * 179.97438 * 25 24 22 44 44 H 0.97004 * 125.40699 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 1.6524 0.0353 -2.4424 6 6 1.9963 -0.4131 -3.6659 7 8 2.6270 -1.4428 -3.7793 8 6 1.5971 0.3649 -4.8933 9 16 2.2017 -0.4875 -6.3711 10 6 1.6121 0.6079 -7.6190 11 1 1.0586 1.4932 -7.3427 12 6 1.8581 0.3325 -8.9569 13 7 1.4181 1.1511 -9.8891 14 14 2.8148 -1.1992 -9.4346 15 1 1.8724 -2.3299 -9.6318 16 1 3.5557 -0.9465 -10.6965 17 1 3.7766 -1.5389 -8.3554 18 6 2.0401 -0.7212 1.2492 19 7 1.6525 0.0353 2.4423 20 6 1.9965 -0.4132 3.6658 21 8 2.6266 -1.4433 3.7791 22 6 1.5984 0.3654 4.8932 23 1 0.5824 0.7466 4.7903 24 6 2.5866 1.5206 5.1452 25 7 3.1594 1.2081 6.4668 26 6 2.6138 0.0746 6.9267 27 8 2.9076 -0.4145 8.0004 28 7 1.7160 -0.4719 6.0963 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1263 -0.7995 -1.2056 33 1 1.6053 -1.7198 -1.2952 34 1 1.1482 0.8591 -2.3518 35 1 0.5108 0.4424 -4.9370 36 1 2.0311 1.3638 -4.8473 37 1 1.5896 0.9584 -10.8241 38 1 1.6055 -1.7199 1.2951 39 1 3.1264 -0.7995 1.2055 40 1 1.1490 0.8594 2.3518 41 1 3.3656 1.5309 4.3828 42 1 2.0610 2.4752 5.1699 43 1 3.8250 1.7400 6.9304 44 1 1.2218 -1.2899 6.2624 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500090708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:52 Heat of formation + Delta-G solvation = -95.166049 kcal Electronic energy + Delta-G solvation = -26284.111613 eV Core-core repulsion = 22169.946026 eV Total energy + Delta-G solvation = -4114.165587 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.135 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.88447 -40.00481 -39.40392 -37.36925 -36.66017 -34.80764 -33.58334 -32.66685 -32.47239 -30.12131 -29.47693 -27.34266 -25.93774 -25.55653 -24.14430 -22.33747 -21.35400 -20.95230 -20.57376 -18.62561 -18.27105 -17.83742 -17.06214 -16.73638 -16.49663 -16.32606 -15.91624 -15.81655 -15.46753 -15.07329 -14.95748 -14.71447 -14.49799 -14.31199 -14.00505 -13.78863 -13.61549 -13.37262 -13.30409 -13.11947 -12.83314 -12.81143 -12.12435 -11.76288 -11.56009 -11.40702 -11.30187 -11.03956 -10.93997 -10.75340 -10.64751 -9.99127 -9.89519 -9.72126 -9.62138 -9.49685 -9.09804 -9.02586 -8.54559 -6.96314 -6.32711 -4.04927 1.79768 2.10181 2.35253 2.67879 2.76514 2.90017 3.25628 3.30901 3.37291 3.47746 3.53892 3.59902 3.87969 4.09676 4.24654 4.27723 4.30042 4.35194 4.52238 4.69103 4.71355 4.86729 4.95125 5.06488 5.10337 5.17709 5.20028 5.33788 5.39219 5.51195 5.68676 5.70610 5.72350 5.81455 5.94570 6.40606 6.40953 6.54060 6.73711 6.81778 7.49536 7.51204 7.90186 8.06849 8.37216 8.40761 9.13531 10.76437 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.041266 B = 0.001429 C = 0.001415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.356824 B =19584.702429 C =19789.858127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 H 0.087 0.913 4 C 0.128 3.872 5 N -0.736 5.736 6 C 0.530 3.470 7 O -0.518 6.518 8 C -0.124 4.124 9 S -0.141 6.141 10 C -0.523 4.523 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.880 5.880 14 Si 0.856 3.144 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.125 3.875 19 N -0.722 5.722 20 C 0.499 3.501 21 O -0.516 6.516 22 C 0.103 3.897 23 H 0.118 0.882 24 C 0.105 3.895 25 N -0.739 5.739 26 C 0.706 3.294 27 O -0.581 6.581 28 N -0.715 5.715 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.399 0.601 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.271 0.729 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.403 0.597 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.434 0.566 44 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.713 5.604 30.452 31.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.134 4.134 3 H 0.105 0.895 4 C 0.003 3.997 5 N -0.391 5.391 6 C 0.316 3.684 7 O -0.392 6.392 8 C -0.275 4.275 9 S 0.085 5.915 10 C -0.670 4.670 11 H 0.106 0.894 12 C -0.112 4.112 13 N -0.516 5.516 14 Si 0.681 3.319 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C 0.001 3.999 19 N -0.376 5.376 20 C 0.282 3.718 21 O -0.390 6.390 22 C -0.007 4.007 23 H 0.135 0.865 24 C -0.021 4.021 25 N -0.403 5.403 26 C 0.404 3.596 27 O -0.458 6.458 28 N -0.377 5.377 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.233 0.767 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.238 0.762 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.276 0.724 44 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -2.050 2.895 30.697 30.901 hybrid contribution -0.934 1.443 -0.401 1.765 sum -2.984 4.338 30.296 30.750 Atomic orbital electron populations 1.21908 0.93855 1.02982 1.02109 1.21599 0.97208 1.00788 0.93786 0.89516 1.21173 1.00358 0.95432 0.82702 1.45919 1.59624 1.28182 1.05394 1.20291 0.78755 0.85479 0.83868 1.90714 1.38373 1.23889 1.86197 1.23275 1.05038 1.02996 0.96178 1.84825 1.74012 1.35944 0.96741 1.22310 1.41484 1.11293 0.91932 0.89392 1.24706 0.94572 0.96699 0.95253 1.69933 1.44385 1.36570 1.00756 0.86741 0.81815 0.83249 0.80084 1.19190 1.19908 1.15928 1.21356 1.00761 0.95457 0.82304 1.45952 1.57994 1.27994 1.05620 1.20777 0.80185 0.86274 0.84546 1.90805 1.38212 1.23753 1.86249 1.21845 1.01955 0.91110 0.85831 0.86454 1.22320 0.96172 0.96974 0.86664 1.45128 1.46961 1.27260 1.20968 1.15859 0.79191 0.80901 0.83599 1.91028 1.66457 1.66170 1.22147 1.44828 1.45856 1.29235 1.17821 0.92453 0.91746 0.91875 0.91174 0.91103 0.76664 0.88503 0.88459 0.91911 0.90594 0.90652 0.76237 0.89365 0.88360 0.72409 0.72209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 8.94 37.16 0.33 -0.24 16 2 C -0.11 -0.50 2.46 -90.62 -0.22 -0.72 16 3 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 4 C 0.13 1.10 5.06 -4.04 -0.02 1.08 16 5 N -0.74 -7.67 5.28 -60.29 -0.32 -7.99 16 6 C 0.53 8.62 7.85 -10.98 -0.09 8.54 16 7 O -0.52 -10.62 15.86 5.56 0.09 -10.53 16 8 C -0.12 -2.24 6.16 36.01 0.22 -2.02 16 9 S -0.14 -3.48 18.55 -107.50 -1.99 -5.48 16 10 C -0.52 -14.70 10.04 30.94 0.31 -14.39 16 11 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 12 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 13 N -0.88 -26.09 13.97 55.49 0.78 -25.31 16 14 Si 0.86 21.42 27.74 -169.99 -4.71 16.71 16 15 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 18 C 0.13 0.63 5.06 -4.05 -0.02 0.61 16 19 N -0.72 -2.20 5.28 -60.30 -0.32 -2.51 16 20 C 0.50 2.77 6.94 -10.98 -0.08 2.70 16 21 O -0.52 -5.62 16.58 5.56 0.09 -5.53 16 22 C 0.10 0.30 4.16 -68.21 -0.28 0.02 16 23 H 0.12 -0.06 8.14 -51.93 -0.42 -0.49 16 24 C 0.10 0.18 7.72 -2.98 -0.02 0.16 16 25 N -0.74 -3.71 6.39 -64.47 -0.41 -4.12 16 26 C 0.71 6.37 8.92 -88.40 -0.79 5.58 16 27 O -0.58 -8.02 18.05 5.28 0.10 -7.93 16 28 N -0.71 -4.53 5.62 -59.33 -0.33 -4.87 16 29 H 0.06 0.11 7.18 -51.93 -0.37 -0.27 16 30 H 0.06 0.27 7.18 -51.93 -0.37 -0.10 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.40 2.94 7.65 -40.82 -0.31 2.62 16 35 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 36 H 0.10 1.62 8.14 -51.91 -0.42 1.19 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.40 -0.06 7.66 -40.82 -0.31 -0.37 16 41 H 0.09 0.14 7.72 -51.93 -0.40 -0.26 16 42 H 0.10 -0.13 8.14 -51.93 -0.42 -0.56 16 43 H 0.43 1.51 8.96 -40.82 -0.37 1.15 16 44 H 0.44 2.56 8.96 -40.82 -0.37 2.20 16 LS Contribution 386.16 15.07 5.82 5.82 Total: -1.00 -41.42 386.16 -8.28 -49.70 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.31 Total: -1.93 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -0.75 Total: 3.98 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -0.61 Total: -44.81 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: 0.28 Total: -23.99 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.71 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -41.42 -8.28 -49.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500090708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.467 kcal (2) G-P(sol) polarization free energy of solvation -41.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds