Wall clock time and date at job start Wed Apr 1 2020 02:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 N 1.46500 * 109.47177 * 65.00225 * 4 2 1 6 6 C 1.34778 * 120.00010 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00275 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.99954 * 179.97438 * 6 5 4 9 9 S 1.80994 * 109.46938 * 179.97438 * 8 6 5 10 10 C 1.76203 * 99.99996 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99336 * 359.97438 * 10 9 8 12 12 C 1.38793 * 120.00325 * 180.02562 * 10 9 8 13 13 N 1.31631 * 120.00450 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 119.99864 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.46677 * 89.99893 * 14 12 10 16 16 H 1.48496 * 109.47305 * 209.99746 * 14 12 10 17 17 H 1.48500 * 109.47448 * 330.00274 * 14 12 10 18 18 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 19 19 N 1.46494 * 109.47140 * 295.00115 * 18 2 1 20 20 C 1.34779 * 119.99805 * 180.02562 * 19 18 2 21 21 O 1.21281 * 120.00027 * 359.97438 * 20 19 18 22 22 C 1.50702 * 120.00010 * 179.97438 * 20 19 18 23 23 H 1.09001 * 110.49179 * 40.70177 * 22 20 19 24 24 C 1.54097 * 110.55168 * 277.99746 * 22 20 19 25 25 N 1.47389 * 103.70616 * 241.44338 * 24 22 20 26 26 C 1.33951 * 109.20587 * 359.88333 * 25 24 22 27 27 O 1.21592 * 123.03715 * 180.02562 * 26 25 24 28 28 N 1.33947 * 113.91758 * 0.07666 * 26 25 24 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46738 * 184.99930 * 4 2 1 33 33 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 34 34 H 0.97003 * 120.00376 * 359.97438 * 5 4 2 35 35 H 1.08990 * 109.46967 * 300.00350 * 8 6 5 36 36 H 1.09003 * 109.46447 * 60.00072 * 8 6 5 37 37 H 0.96996 * 120.00376 * 180.02562 * 13 12 10 38 38 H 1.09006 * 109.47396 * 55.00290 * 18 2 1 39 39 H 1.09001 * 109.46992 * 174.99449 * 18 2 1 40 40 H 0.96995 * 120.00545 * 359.97438 * 19 18 2 41 41 H 1.09004 * 110.54872 * 359.97438 * 24 22 20 42 42 H 1.08997 * 110.55290 * 122.80882 * 24 22 20 43 43 H 0.96991 * 125.38226 * 179.97438 * 25 24 22 44 44 H 0.97004 * 125.40699 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 1.6524 0.0353 -2.4424 6 6 1.9963 -0.4131 -3.6659 7 8 2.6270 -1.4428 -3.7793 8 6 1.5971 0.3649 -4.8933 9 16 2.2017 -0.4875 -6.3711 10 6 1.6121 0.6079 -7.6190 11 1 1.0586 1.4932 -7.3427 12 6 1.8581 0.3325 -8.9569 13 7 1.4181 1.1511 -9.8891 14 14 2.8148 -1.1992 -9.4346 15 1 1.8724 -2.3299 -9.6318 16 1 3.5557 -0.9465 -10.6965 17 1 3.7766 -1.5389 -8.3554 18 6 2.0401 -0.7212 1.2492 19 7 1.6525 0.0353 2.4423 20 6 1.9965 -0.4132 3.6658 21 8 2.6266 -1.4433 3.7791 22 6 1.5984 0.3654 4.8932 23 1 0.5824 0.7466 4.7903 24 6 2.5866 1.5206 5.1452 25 7 3.1594 1.2081 6.4668 26 6 2.6138 0.0746 6.9267 27 8 2.9076 -0.4145 8.0004 28 7 1.7160 -0.4719 6.0963 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1263 -0.7995 -1.2056 33 1 1.6053 -1.7198 -1.2952 34 1 1.1482 0.8591 -2.3518 35 1 0.5108 0.4424 -4.9370 36 1 2.0311 1.3638 -4.8473 37 1 1.5896 0.9584 -10.8241 38 1 1.6055 -1.7199 1.2951 39 1 3.1264 -0.7995 1.2055 40 1 1.1490 0.8594 2.3518 41 1 3.3656 1.5309 4.3828 42 1 2.0610 2.4752 5.1699 43 1 3.8250 1.7400 6.9304 44 1 1.2218 -1.2899 6.2624 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500090708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:51 Heat of formation + Delta-G solvation = -133.310055 kcal Electronic energy + Delta-G solvation = -26285.765661 eV Core-core repulsion = 22169.946026 eV Total energy + Delta-G solvation = -4115.819635 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.135 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.33152 -40.78685 -40.33272 -38.05385 -37.31167 -35.59342 -34.65978 -33.99277 -33.43978 -31.02626 -30.25414 -27.90336 -27.71473 -26.49871 -24.51597 -22.82923 -21.89335 -21.68046 -21.44116 -19.87875 -19.10059 -18.58826 -17.80150 -17.63376 -17.33157 -17.08719 -16.88583 -16.66328 -16.60084 -16.24976 -15.78027 -15.56396 -15.24880 -15.08489 -14.92397 -14.79012 -14.62888 -14.37500 -13.95698 -13.85395 -13.65969 -13.39927 -13.32569 -13.14077 -12.99968 -12.66401 -12.15115 -12.11309 -11.85676 -11.81740 -11.61077 -11.39591 -11.16228 -11.00681 -10.57608 -10.51026 -10.15918 -10.10230 -9.83739 -8.98099 -8.50616 -6.21010 1.00925 1.31940 1.39013 1.47747 1.56053 1.59630 1.69063 1.94293 2.13270 2.25392 2.36860 2.74306 2.88012 3.06740 3.32769 3.56590 3.75493 3.83615 3.89906 3.98314 4.01824 4.26794 4.36100 4.45358 4.50379 4.53392 4.66807 4.72513 4.80259 4.82158 4.92582 5.02887 5.19920 5.33998 5.42114 5.49062 5.71816 5.89529 6.12651 6.19044 6.28161 6.49613 6.52958 6.95202 7.18447 7.23546 7.50353 8.61541 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.041266 B = 0.001429 C = 0.001415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.356824 B =19584.702429 C =19789.858127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 H 0.114 0.886 4 C 0.124 3.876 5 N -0.706 5.706 6 C 0.533 3.467 7 O -0.566 6.566 8 C -0.110 4.110 9 S -0.182 6.182 10 C -0.527 4.527 11 H 0.065 0.935 12 C 0.047 3.953 13 N -0.916 5.916 14 Si 0.912 3.088 15 H -0.263 1.263 16 H -0.260 1.260 17 H -0.238 1.238 18 C 0.128 3.872 19 N -0.700 5.700 20 C 0.499 3.501 21 O -0.578 6.578 22 C 0.107 3.893 23 H 0.167 0.833 24 C 0.103 3.897 25 N -0.733 5.733 26 C 0.692 3.308 27 O -0.643 6.643 28 N -0.717 5.717 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.419 0.581 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.276 0.724 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.424 0.576 41 H 0.093 0.907 42 H 0.145 0.855 43 H 0.439 0.561 44 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.775 7.600 31.431 32.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.113 4.113 3 H 0.132 0.868 4 C -0.001 4.001 5 N -0.361 5.361 6 C 0.319 3.681 7 O -0.445 6.445 8 C -0.261 4.261 9 S 0.044 5.956 10 C -0.675 4.675 11 H 0.083 0.917 12 C -0.158 4.158 13 N -0.554 5.554 14 Si 0.734 3.266 15 H -0.188 1.188 16 H -0.185 1.185 17 H -0.162 1.162 18 C 0.003 3.997 19 N -0.354 5.354 20 C 0.284 3.716 21 O -0.456 6.456 22 C -0.003 4.003 23 H 0.184 0.816 24 C -0.021 4.021 25 N -0.395 5.395 26 C 0.391 3.609 27 O -0.525 6.525 28 N -0.377 5.377 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.257 0.743 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.263 0.737 41 H 0.112 0.888 42 H 0.163 0.837 43 H 0.282 0.718 44 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -3.174 5.012 31.650 32.201 hybrid contribution -0.674 0.910 -0.620 1.291 sum -3.847 5.922 31.029 31.823 Atomic orbital electron populations 1.21942 0.92816 1.02566 1.03617 1.21435 0.97757 1.01228 0.90899 0.86839 1.21321 0.99899 0.95349 0.83482 1.45627 1.57931 1.28456 1.04046 1.19973 0.78572 0.84674 0.84920 1.90707 1.40934 1.25927 1.86923 1.23270 1.06033 1.03138 0.93677 1.84796 1.74724 1.36684 0.99359 1.22462 1.40797 1.11018 0.93218 0.91717 1.25520 0.95511 0.99351 0.95419 1.70008 1.45804 1.38287 1.01344 0.85901 0.80683 0.79946 0.80047 1.18815 1.18456 1.16166 1.21170 0.99840 0.95260 0.83391 1.45709 1.57153 1.28220 1.04276 1.21302 0.79030 0.85564 0.85731 1.90795 1.41108 1.26621 1.87100 1.22218 1.04830 0.90267 0.82972 0.81614 1.22707 0.96353 0.98224 0.84792 1.45161 1.46444 1.25919 1.22019 1.16237 0.79639 0.81775 0.83273 1.90967 1.68520 1.68054 1.24940 1.44891 1.44879 1.29430 1.18523 0.89591 0.91624 0.93338 0.92232 0.92479 0.74324 0.86645 0.86568 0.91413 0.92246 0.92140 0.73731 0.88840 0.83738 0.71765 0.72417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 8.94 71.98 0.64 0.08 16 2 C -0.09 -0.51 2.46 -10.79 -0.03 -0.53 16 3 H 0.11 0.11 8.14 -2.39 -0.02 0.10 16 4 C 0.12 1.89 5.06 86.38 0.44 2.33 16 5 N -0.71 -12.82 5.28 -463.06 -2.45 -15.26 16 6 C 0.53 16.48 7.85 87.66 0.69 17.16 16 7 O -0.57 -23.03 15.86 -3.03 -0.05 -23.08 16 8 C -0.11 -3.79 6.16 71.24 0.44 -3.35 16 9 S -0.18 -8.90 18.55 -56.49 -1.05 -9.95 16 10 C -0.53 -29.82 10.04 67.95 0.68 -29.14 16 11 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 12 C 0.05 2.73 5.50 84.86 0.47 3.20 16 13 N -0.92 -54.71 13.97 21.65 0.30 -54.40 16 14 Si 0.91 44.28 27.74 68.60 1.90 46.18 16 15 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.24 -11.55 6.74 99.48 0.67 -10.88 16 18 C 0.13 1.05 5.06 86.38 0.44 1.48 16 19 N -0.70 -1.87 5.28 -463.06 -2.45 -4.31 16 20 C 0.50 4.44 6.94 87.66 0.61 5.05 16 21 O -0.58 -12.50 16.58 -3.03 -0.05 -12.55 16 22 C 0.11 0.27 4.16 44.51 0.19 0.46 16 23 H 0.17 -1.11 8.14 -2.39 -0.02 -1.13 16 24 C 0.10 -0.04 7.72 86.58 0.67 0.63 16 25 N -0.73 -6.13 6.39 -476.60 -3.04 -9.17 16 26 C 0.69 12.36 8.92 179.57 1.60 13.96 16 27 O -0.64 -18.67 18.05 -4.01 -0.07 -18.74 16 28 N -0.72 -8.38 5.62 -460.35 -2.59 -10.97 16 29 H 0.09 -0.14 7.18 -2.39 -0.02 -0.16 16 30 H 0.06 0.27 7.18 -2.39 -0.02 0.25 16 31 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.42 4.45 7.65 -92.71 -0.71 3.74 16 35 H 0.12 3.57 8.14 -2.40 -0.02 3.55 16 36 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 37 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.42 -2.40 7.66 -92.71 -0.71 -3.11 16 41 H 0.09 -0.07 7.72 -2.38 -0.02 -0.08 16 42 H 0.14 -1.27 8.14 -2.39 -0.02 -1.29 16 43 H 0.44 2.50 8.96 -92.72 -0.83 1.67 16 44 H 0.43 5.08 8.96 -92.71 -0.83 4.25 16 Total: -1.00 -96.51 386.16 -4.74 -101.25 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -2.04 Total: -0.32 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 6.83 Total: 11.32 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -10.22 Total: -94.12 kcal Atomic # 8 Polarization: -54.20 SS G_CDS: -0.17 Total: -54.37 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.90 Total: 46.18 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.05 Total: -9.95 kcal Total: -96.51 -4.74 -101.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500090708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.061 kcal (2) G-P(sol) polarization free energy of solvation -96.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds