Wall clock time and date at job start Wed Apr 1 2020 02:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46982 * 2 1 4 4 C 1.50698 * 109.47208 * 239.99731 * 2 1 3 5 5 O 1.21278 * 119.99759 * 239.99943 * 4 2 1 6 6 N 1.34771 * 119.99929 * 60.00242 * 4 2 1 7 7 C 1.46501 * 119.99990 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47220 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.49501 * 305.06176 * 8 7 6 10 10 C 1.53616 * 109.42956 * 65.29118 * 8 7 6 11 11 N 1.46927 * 108.54181 * 174.72628 * 10 8 7 12 12 C 1.36934 * 120.63500 * 126.36624 * 11 10 8 13 13 H 1.07998 * 119.99738 * 331.74371 * 12 11 10 14 14 C 1.38807 * 120.00402 * 151.73315 * 12 11 10 15 15 N 1.31623 * 120.00004 * 342.87942 * 14 12 11 16 16 Si 1.86803 * 120.00325 * 162.87468 * 14 12 11 17 17 H 1.48503 * 109.46788 * 266.23275 * 16 14 12 18 18 H 1.48498 * 109.46667 * 26.22751 * 16 14 12 19 19 H 1.48497 * 109.47503 * 146.22880 * 16 14 12 20 20 C 1.46928 * 118.73908 * 306.09075 * 11 10 8 21 21 C 1.53193 * 108.77182 * 53.85908 * 20 11 10 22 22 C 1.53041 * 109.49438 * 185.00250 * 8 7 6 23 23 F 1.39901 * 109.46178 * 58.66477 * 22 8 7 24 24 F 1.39893 * 109.45002 * 298.69292 * 22 8 7 25 25 C 1.53002 * 109.46969 * 119.99727 * 2 1 3 26 26 F 1.39891 * 109.47179 * 180.02562 * 25 2 1 27 27 F 1.39906 * 109.47090 * 300.00235 * 25 2 1 28 28 F 1.39899 * 109.47023 * 59.99875 * 25 2 1 29 29 H 1.08998 * 109.47300 * 60.00536 * 1 2 3 30 30 H 1.09001 * 109.46982 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47484 * 300.00024 * 1 2 3 32 32 H 0.96994 * 120.00367 * 359.97438 * 6 4 2 33 33 H 1.09001 * 109.47072 * 60.00003 * 7 6 4 34 34 H 1.09000 * 109.47422 * 300.00046 * 7 6 4 35 35 H 1.08999 * 109.74423 * 54.98803 * 10 8 7 36 36 H 1.09003 * 109.66836 * 294.41626 * 10 8 7 37 37 H 0.97003 * 119.99963 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.58742 * 173.64651 * 20 11 10 39 39 H 1.08998 * 109.58551 * 294.07788 * 20 11 10 40 40 H 1.09003 * 109.49514 * 65.32189 * 21 20 11 41 41 H 1.09000 * 109.49860 * 185.41293 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6965 -1.1190 6 7 1.7068 -0.2500 -2.4545 7 6 2.1956 -0.9404 -3.6506 8 6 1.6851 -0.2196 -4.8999 9 1 0.5988 -0.1410 -4.8561 10 6 2.3028 1.1853 -4.9677 11 7 1.9016 1.8115 -6.2348 12 6 1.3009 3.0419 -6.2457 13 1 0.7143 3.3639 -5.3980 14 6 1.4460 3.8755 -7.3461 15 7 2.4067 3.6532 -8.2180 16 14 0.2780 5.3128 -7.5896 17 1 -0.8449 4.8949 -8.4670 18 1 -0.2567 5.7446 -6.2732 19 1 1.0069 6.4415 -8.2221 20 6 2.1628 1.0950 -7.4907 21 6 1.5518 -0.3066 -7.3950 22 6 2.0902 -1.0094 -6.1466 23 9 1.5583 -2.3013 -6.0732 24 9 3.4853 -1.0830 -6.2185 25 6 2.0400 -0.7212 1.2493 26 9 3.4389 -0.7207 1.2496 27 9 1.5735 -0.0616 2.3916 28 9 1.5736 -2.0402 1.2493 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.1489 0.5384 -2.5436 33 1 1.8327 -1.9682 -3.6508 34 1 3.2856 -0.9400 -3.6505 35 1 3.3894 1.1122 -4.9241 36 1 1.9411 1.7857 -4.1329 37 1 2.5078 4.2355 -8.9871 38 1 1.7088 1.6356 -8.3211 39 1 3.2383 1.0146 -7.6486 40 1 0.4667 -0.2265 -7.3280 41 1 1.8206 -0.8819 -8.2808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500613354.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:30 Heat of formation + Delta-G solvation = -296.943831 kcal Electronic energy + Delta-G solvation = -31890.383814 eV Core-core repulsion = 26639.478608 eV Total energy + Delta-G solvation = -5250.905206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.126 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.11945 -49.98367 -48.61721 -48.57745 -47.94205 -41.09561 -38.96131 -36.47278 -35.23524 -34.26893 -32.23910 -31.91256 -27.42572 -27.40334 -26.92869 -24.63209 -23.91396 -22.91127 -21.63940 -21.09700 -19.84286 -19.49720 -19.03008 -18.59128 -18.30286 -17.93087 -17.39795 -17.00931 -16.94884 -16.64211 -16.25451 -15.87036 -15.55319 -15.36235 -15.35488 -15.00863 -14.94175 -14.81303 -14.74921 -14.69416 -14.60620 -14.39310 -14.26259 -13.99310 -13.80265 -13.49002 -13.23194 -13.17959 -13.06867 -13.02046 -12.92052 -12.60338 -12.39858 -12.24293 -12.15504 -11.89265 -11.62723 -11.38237 -11.06076 -10.55612 -10.27724 -8.78928 -7.88842 -5.36022 1.35482 1.46858 1.52812 1.55375 1.63060 1.93435 2.51376 2.65238 2.77914 3.00748 3.05915 3.18603 3.25209 3.31079 3.53045 3.58208 3.66705 3.82139 3.91847 4.01488 4.08310 4.26474 4.50356 4.56771 4.65289 4.66755 4.70952 4.78097 4.86141 4.90046 5.08060 5.14029 5.21221 5.31341 5.60807 5.68991 6.28599 6.35969 6.98227 7.10132 7.78244 8.30904 9.19200 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012971 B = 0.003196 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.133485 B = 8758.177102 C =10242.268777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.153 4.153 3 H 0.174 0.826 4 C 0.519 3.481 5 O -0.567 6.567 6 N -0.700 5.700 7 C 0.135 3.865 8 C -0.138 4.138 9 H 0.125 0.875 10 C 0.153 3.847 11 N -0.605 5.605 12 C -0.262 4.262 13 H 0.085 0.915 14 C -0.047 4.047 15 N -0.936 5.936 16 Si 0.966 3.034 17 H -0.287 1.287 18 H -0.261 1.261 19 H -0.304 1.304 20 C 0.177 3.823 21 C -0.168 4.168 22 C 0.298 3.702 23 F -0.207 7.207 24 F -0.211 7.211 25 C 0.466 3.534 26 F -0.189 7.189 27 F -0.175 7.175 28 F -0.185 7.185 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.421 0.579 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.015 0.985 36 H 0.089 0.911 37 H 0.250 0.750 38 H 0.073 0.927 39 H 0.002 0.998 40 H 0.101 0.899 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.911 -6.135 14.606 17.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 H 0.191 0.809 4 C 0.305 3.695 5 O -0.446 6.446 6 N -0.353 5.353 7 C 0.010 3.990 8 C -0.159 4.159 9 H 0.143 0.857 10 C 0.027 3.973 11 N -0.327 5.327 12 C -0.391 4.391 13 H 0.102 0.898 14 C -0.242 4.242 15 N -0.582 5.582 16 Si 0.795 3.205 17 H -0.214 1.214 18 H -0.185 1.185 19 H -0.231 1.231 20 C 0.051 3.949 21 C -0.208 4.208 22 C 0.261 3.739 23 F -0.188 7.188 24 F -0.192 7.192 25 C 0.412 3.588 26 F -0.171 7.171 27 F -0.156 7.156 28 F -0.167 7.167 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.259 0.741 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.107 0.893 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.020 0.980 40 H 0.119 0.881 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.348 -6.770 14.575 17.279 hybrid contribution 0.103 0.700 -0.523 0.880 sum -6.245 -6.070 14.051 16.531 Atomic orbital electron populations 1.21958 0.86881 1.04829 1.07035 1.22715 1.03082 1.03691 0.88025 0.80897 1.20250 0.79906 0.84192 0.85150 1.90813 1.39044 1.27683 1.87071 1.45610 1.53201 1.32372 1.04080 1.21132 0.99251 0.96008 0.82608 1.22866 1.04578 0.97180 0.91255 0.85726 1.21098 0.95918 0.90265 0.90044 1.44345 1.69566 1.17953 1.00879 1.19600 1.23266 0.92336 1.03914 0.89755 1.25819 0.98530 1.00308 0.99572 1.70180 1.31834 1.40948 1.15211 0.85269 0.78304 0.78605 0.78318 1.21436 1.18548 1.23121 1.20548 0.95825 0.88113 0.90402 1.23097 1.03431 0.98736 0.95541 1.21099 0.74446 0.79070 0.99293 1.92972 1.86094 1.42208 1.97554 1.92954 1.32188 1.96508 1.97584 1.20142 0.75319 0.77631 0.85718 1.93191 1.30694 1.96386 1.96791 1.93196 1.88356 1.80530 1.53521 1.93177 1.88325 1.38404 1.96786 0.87360 0.91456 0.88063 0.74063 0.90861 0.92067 0.96694 0.89319 0.94082 0.90879 0.97986 0.88051 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.85 71.98 0.64 -0.74 16 2 C -0.15 -2.26 2.71 -11.54 -0.03 -2.30 16 3 H 0.17 1.48 8.14 -2.39 -0.02 1.46 16 4 C 0.52 11.69 6.92 87.66 0.61 12.30 16 5 O -0.57 -18.25 14.83 -3.02 -0.04 -18.30 16 6 N -0.70 -13.85 5.23 -463.07 -2.42 -16.27 16 7 C 0.13 3.47 4.83 86.38 0.42 3.89 16 8 C -0.14 -3.82 2.04 -10.57 -0.02 -3.84 16 9 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 10 C 0.15 5.19 5.42 86.51 0.47 5.66 16 11 N -0.61 -26.15 2.99 -698.27 -2.09 -28.24 16 12 C -0.26 -12.34 9.58 84.03 0.81 -11.54 16 13 H 0.08 3.67 7.89 -2.91 -0.02 3.65 16 14 C -0.05 -2.34 4.91 84.86 0.42 -1.92 16 15 N -0.94 -51.41 11.20 21.65 0.24 -51.17 16 16 Si 0.97 40.45 29.59 68.60 2.03 42.48 16 17 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 19 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 20 C 0.18 7.73 5.10 86.36 0.44 8.17 16 21 C -0.17 -5.67 5.62 30.67 0.17 -5.50 16 22 C 0.30 9.55 1.63 30.62 0.05 9.60 16 23 F -0.21 -6.39 16.40 44.97 0.74 -5.65 16 24 F -0.21 -7.74 15.72 44.97 0.71 -7.03 16 25 C 0.47 9.57 2.42 71.98 0.17 9.74 16 26 F -0.19 -4.84 16.40 44.97 0.74 -4.11 16 27 F -0.17 -3.10 16.80 44.97 0.76 -2.35 16 28 F -0.19 -4.56 15.88 44.97 0.71 -3.85 16 29 H 0.11 0.57 7.56 -2.39 -0.02 0.55 16 30 H 0.07 0.78 7.80 -2.39 -0.02 0.76 16 31 H 0.10 0.63 7.80 -2.39 -0.02 0.61 16 32 H 0.42 5.81 7.14 -92.71 -0.66 5.15 16 33 H 0.07 1.97 7.63 -2.39 -0.02 1.96 16 34 H 0.06 1.83 7.97 -2.39 -0.02 1.81 16 35 H 0.02 0.58 7.92 -2.39 -0.02 0.56 16 36 H 0.09 2.57 7.16 -2.39 -0.02 2.56 16 37 H 0.25 13.47 8.31 -92.71 -0.77 12.70 16 38 H 0.07 3.60 6.05 -2.39 -0.01 3.59 16 39 H 0.00 0.10 7.92 -2.39 -0.02 0.08 16 40 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -65.88 350.11 5.94 -59.95 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.43 Total: 11.02 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: 4.14 Total: 23.52 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -4.26 Total: -95.67 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.04 Total: -18.30 kcal Atomic # 9 Polarization: -26.64 SS G_CDS: 3.65 Total: -22.99 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -65.88 5.94 -59.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500613354.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -236.998 kcal (2) G-P(sol) polarization free energy of solvation -65.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -302.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -296.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds