Wall clock time and date at job start Wed Apr 1 2020 02:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35720 * 117.00300 * 2 1 4 4 C 1.38892 * 119.93277 * 0.27819 * 3 2 1 5 5 C 1.37725 * 120.16380 * 180.27557 * 4 3 2 6 6 C 1.39810 * 120.02687 * 359.72667 * 5 4 3 7 7 C 1.47479 * 120.06563 * 179.97438 * 6 5 4 8 8 O 1.21503 * 119.99995 * 174.81977 * 7 6 5 9 9 O 1.34754 * 119.99988 * 354.81870 * 7 6 5 10 10 C 1.45200 * 117.00124 * 184.89606 * 9 7 6 11 11 C 1.52994 * 109.47222 * 183.71848 * 10 9 7 12 12 C 1.50696 * 115.55199 * 306.32317 * 11 10 9 13 13 H 1.07999 * 120.00689 * 144.82152 * 12 11 10 14 14 C 1.37882 * 119.99920 * 324.82235 * 12 11 10 15 15 N 1.31517 * 119.99732 * 344.97660 * 14 12 11 16 16 Si 1.86795 * 120.00341 * 164.97354 * 14 12 11 17 17 H 1.48500 * 109.47215 * 90.00060 * 16 14 12 18 18 H 1.48492 * 109.47283 * 210.00123 * 16 14 12 19 19 H 1.48501 * 109.47162 * 330.00286 * 16 14 12 20 20 C 1.53001 * 117.49992 * 160.64759 * 11 10 9 21 21 C 1.53008 * 117.49847 * 91.99158 * 11 10 9 22 22 C 1.39710 * 119.86879 * 359.97438 * 6 5 4 23 23 C 1.38269 * 119.84246 * 0.02562 * 22 6 5 24 24 N 1.40362 * 120.01612 * 180.02562 * 23 22 6 25 25 C 1.35031 * 127.38732 * 359.96649 * 24 23 22 26 26 N 1.30754 * 107.27696 * 180.02562 * 25 24 23 27 27 N 1.28432 * 110.64213 * 0.02562 * 26 25 24 28 28 N 1.28947 * 110.19386 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47412 * 59.99972 * 1 2 3 30 30 H 1.09004 * 109.47531 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47442 * 299.99759 * 1 2 3 32 32 H 1.08007 * 119.92002 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.98714 * 179.74031 * 5 4 3 34 34 H 1.09000 * 109.46689 * 303.71948 * 10 9 7 35 35 H 1.08994 * 109.47067 * 63.71345 * 10 9 7 36 36 H 0.96999 * 119.99672 * 185.04607 * 15 14 12 37 37 H 1.08997 * 117.49842 * 0.02562 * 20 11 10 38 38 H 1.09001 * 117.49369 * 145.01955 * 20 11 10 39 39 H 1.08999 * 117.49545 * 214.97987 * 21 11 10 40 40 H 1.08999 * 117.50064 * 359.97405 * 21 11 10 41 41 H 1.08006 * 120.08285 * 179.97438 * 22 6 5 42 42 H 1.07993 * 126.36498 * 0.07947 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2874 2.3732 0.0058 5 6 1.9078 3.6029 0.0001 6 6 3.3036 3.6823 -0.0058 7 6 3.9687 4.9985 -0.0125 8 8 5.1784 5.0684 0.0774 9 8 3.2349 6.1237 -0.1183 10 6 3.9609 7.3764 -0.2283 11 6 2.9690 8.5410 -0.2450 12 6 1.8797 8.4523 -1.2826 13 1 0.8907 8.8251 -1.0607 14 6 2.1457 7.8950 -2.5154 15 7 3.3902 7.7130 -2.9001 16 14 0.7387 7.3984 -3.6393 17 1 0.3747 8.5433 -4.5122 18 1 1.1588 6.2489 -4.4801 19 1 -0.4361 7.0084 -2.8189 20 6 3.5066 9.9319 0.0976 21 6 2.6162 9.1879 1.0960 22 6 4.0671 2.5122 -0.0054 23 6 3.4386 1.2806 0.0004 24 7 4.2021 0.1028 0.0014 25 6 5.5484 -0.0017 -0.0034 26 7 5.8390 -1.2765 -0.0009 27 7 4.7678 -1.9851 0.0046 28 7 3.7289 -1.2213 0.0054 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2090 2.3140 0.0100 33 1 1.3157 4.5061 0.0005 34 1 4.6324 7.4831 0.6237 35 1 4.5413 7.3801 -1.1509 36 1 3.5788 7.3896 -3.7949 37 1 4.5670 10.0172 0.3346 38 1 3.0721 10.7827 -0.4273 39 1 1.5964 9.5495 1.2274 40 1 3.0905 8.7834 1.9901 41 1 5.1456 2.5695 -0.0103 42 1 6.2540 0.8158 -0.0076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781807708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:47 Heat of formation + Delta-G solvation = 68.359668 kcal Electronic energy + Delta-G solvation = -29559.917744 eV Core-core repulsion = 25317.399213 eV Total energy + Delta-G solvation = -4242.518531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.32055 -40.82221 -39.64334 -37.88680 -36.79522 -35.33975 -35.20899 -32.42212 -32.27591 -30.94962 -30.61606 -28.03343 -26.73269 -25.52252 -25.19887 -24.14049 -22.96441 -22.17978 -21.33534 -20.55742 -19.31915 -19.10264 -18.03128 -17.13531 -16.86874 -16.73923 -16.45168 -16.06318 -15.90105 -15.71422 -15.47942 -14.71712 -14.66950 -14.37601 -13.98333 -13.58010 -13.35663 -13.27009 -13.08667 -12.61360 -12.43098 -12.27021 -12.04345 -11.88130 -11.73880 -11.49117 -11.34728 -11.15494 -11.06328 -10.96265 -10.61729 -10.60322 -10.45030 -10.23258 -9.70258 -9.57841 -9.32833 -9.27340 -8.86731 -8.56030 -8.21225 -6.19126 -4.19504 0.13094 0.50487 1.33271 1.52736 2.11581 2.65087 2.68459 3.16273 3.17684 3.25947 3.28211 3.55718 3.79065 4.06505 4.25610 4.35008 4.42670 4.67558 4.76863 4.81634 4.84381 4.85737 4.88572 5.13639 5.16247 5.18195 5.25975 5.40829 5.66473 5.81072 5.90496 5.97475 5.98198 6.09069 6.17511 6.32941 6.48612 6.55263 6.67479 6.81802 6.86144 7.15411 7.24361 7.29505 7.77454 8.21335 8.25724 8.35564 8.74354 9.39322 10.84135 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.003140 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.301207 B = 8916.471918 C = 9780.634198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.286 6.286 3 C 0.174 3.826 4 C -0.205 4.205 5 C -0.003 4.003 6 C -0.126 4.126 7 C 0.504 3.496 8 O -0.521 6.521 9 O -0.318 6.318 10 C 0.116 3.884 11 C 0.048 3.952 12 C -0.487 4.487 13 H 0.063 0.937 14 C 0.078 3.922 15 N -0.880 5.880 16 Si 0.889 3.111 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.270 1.270 20 C -0.191 4.191 21 C -0.209 4.209 22 C -0.023 4.023 23 C 0.075 3.925 24 N -0.314 5.314 25 C 0.219 3.781 26 N -0.332 5.332 27 N -0.051 5.051 28 N -0.052 5.052 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.152 0.848 33 H 0.161 0.839 34 H 0.033 0.967 35 H 0.112 0.888 36 H 0.264 0.736 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.156 0.844 42 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.585 -11.413 5.883 13.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.197 6.197 3 C 0.124 3.876 4 C -0.224 4.224 5 C -0.022 4.022 6 C -0.129 4.129 7 C 0.349 3.651 8 O -0.413 6.413 9 O -0.232 6.232 10 C 0.044 3.956 11 C 0.048 3.952 12 C -0.524 4.524 13 H 0.081 0.919 14 C -0.125 4.125 15 N -0.517 5.517 16 Si 0.717 3.283 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.195 1.195 20 C -0.229 4.229 21 C -0.246 4.246 22 C -0.044 4.044 23 C -0.018 4.018 24 N -0.104 5.104 25 C -0.078 4.078 26 N -0.181 5.181 27 N -0.046 5.046 28 N -0.038 5.038 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.169 0.831 33 H 0.179 0.821 34 H 0.051 0.949 35 H 0.129 0.871 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.173 0.827 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -3.345 -13.137 5.779 14.737 hybrid contribution -0.713 1.138 -0.685 1.507 sum -4.058 -11.999 5.094 13.653 Atomic orbital electron populations 1.23258 0.77425 1.04784 1.01942 1.86297 1.22019 1.24803 1.86552 1.18862 0.89617 0.86107 0.92984 1.21248 1.01087 0.90782 1.09323 1.21680 0.93522 0.98697 0.88298 1.18947 0.93548 0.90865 1.09503 1.20631 0.85435 0.85484 0.73575 1.90780 1.15196 1.88271 1.47030 1.86533 1.40535 1.15229 1.80890 1.22865 0.93271 0.77890 1.01612 1.18860 0.96075 0.87725 0.92574 1.20386 0.95177 1.39664 0.97157 0.91875 1.24906 0.95447 0.94484 0.97709 1.69820 1.17985 1.45230 1.18617 0.86625 0.82685 0.78573 0.80450 1.20625 1.21016 1.19519 1.22974 0.96830 0.98771 1.04363 1.22979 0.99473 1.08118 0.94071 1.20714 1.01294 0.87870 0.94500 1.16487 0.87372 0.82651 1.15307 1.48861 1.05923 1.06750 1.48843 1.27490 0.84561 0.98343 0.97367 1.74471 1.21524 1.00369 1.21711 1.78069 0.92597 1.23210 1.10712 1.82904 1.18150 0.82491 1.20247 0.91931 0.87550 0.91958 0.83087 0.82138 0.94924 0.87063 0.92601 0.91434 0.89718 0.90267 0.91264 0.82672 0.74463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.29 -3.15 8.65 -18.87 -0.16 -3.31 16 3 C 0.17 1.99 6.71 -38.86 -0.26 1.73 16 4 C -0.21 -2.10 9.01 -39.53 -0.36 -2.45 16 5 C 0.00 -0.04 9.60 -39.18 -0.38 -0.42 16 6 C -0.13 -1.81 5.87 -104.99 -0.62 -2.43 16 7 C 0.50 9.34 7.88 34.50 0.27 9.61 16 8 O -0.52 -10.47 16.07 -19.27 -0.31 -10.78 16 9 O -0.32 -6.67 9.12 -40.64 -0.37 -7.04 16 10 C 0.12 2.62 4.66 37.15 0.17 2.80 16 11 C 0.05 1.11 2.10 -155.66 -0.33 0.78 16 12 C -0.49 -12.23 8.75 -34.44 -0.30 -12.53 16 13 H 0.06 1.58 7.86 -52.49 -0.41 1.17 16 14 C 0.08 1.96 5.12 -17.82 -0.09 1.87 16 15 N -0.88 -22.91 10.97 55.43 0.61 -22.30 16 16 Si 0.89 19.46 29.57 -169.99 -5.03 14.43 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 C -0.19 -4.01 9.96 -26.69 -0.27 -4.28 16 21 C -0.21 -4.19 9.92 -26.69 -0.26 -4.46 16 22 C -0.02 -0.28 9.02 -39.02 -0.35 -0.63 16 23 C 0.07 0.91 6.71 -83.46 -0.56 0.35 16 24 N -0.31 -3.96 3.86 -11.68 -0.05 -4.01 16 25 C 0.22 2.38 12.15 -90.17 -1.10 1.29 16 26 N -0.33 -4.49 12.16 29.64 0.36 -4.13 16 27 N -0.05 -0.76 13.39 60.35 0.81 0.05 16 28 N -0.05 -0.76 12.08 60.35 0.73 -0.03 16 29 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.33 7.64 -51.93 -0.40 -0.07 16 32 H 0.15 1.10 6.27 -52.48 -0.33 0.77 16 33 H 0.16 2.02 7.61 -52.49 -0.40 1.62 16 34 H 0.03 0.69 7.95 -51.93 -0.41 0.28 16 35 H 0.11 2.80 6.12 -51.93 -0.32 2.48 16 36 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.16 1.62 6.47 -52.48 -0.34 1.28 16 42 H 0.24 1.46 7.19 -52.49 -0.38 1.09 16 LS Contribution 368.24 15.07 5.55 5.55 Total: -1.00 -31.04 368.24 -5.92 -36.97 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.63 Total: 2.26 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -3.43 Total: -7.64 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 2.46 Total: -30.43 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.84 Total: -21.13 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.04 -5.92 -36.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781807708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.327 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds