Wall clock time and date at job start Wed Apr 1 2020 02:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35720 * 117.00300 * 2 1 4 4 C 1.38892 * 119.93277 * 0.27819 * 3 2 1 5 5 C 1.37725 * 120.16380 * 180.27557 * 4 3 2 6 6 C 1.39810 * 120.02687 * 359.72667 * 5 4 3 7 7 C 1.47479 * 120.06563 * 179.97438 * 6 5 4 8 8 O 1.21503 * 119.99995 * 174.81977 * 7 6 5 9 9 O 1.34754 * 119.99988 * 354.81870 * 7 6 5 10 10 C 1.45200 * 117.00124 * 184.89606 * 9 7 6 11 11 C 1.52994 * 109.47222 * 183.71848 * 10 9 7 12 12 C 1.50696 * 115.55199 * 306.32317 * 11 10 9 13 13 H 1.07999 * 120.00689 * 144.82152 * 12 11 10 14 14 C 1.37882 * 119.99920 * 324.82235 * 12 11 10 15 15 N 1.31517 * 119.99732 * 344.97660 * 14 12 11 16 16 Si 1.86795 * 120.00341 * 164.97354 * 14 12 11 17 17 H 1.48500 * 109.47215 * 90.00060 * 16 14 12 18 18 H 1.48492 * 109.47283 * 210.00123 * 16 14 12 19 19 H 1.48501 * 109.47162 * 330.00286 * 16 14 12 20 20 C 1.53001 * 117.49992 * 160.64759 * 11 10 9 21 21 C 1.53008 * 117.49847 * 91.99158 * 11 10 9 22 22 C 1.39710 * 119.86879 * 359.97438 * 6 5 4 23 23 C 1.38269 * 119.84246 * 0.02562 * 22 6 5 24 24 N 1.40362 * 120.01612 * 180.02562 * 23 22 6 25 25 C 1.35031 * 127.38732 * 359.96649 * 24 23 22 26 26 N 1.30754 * 107.27696 * 180.02562 * 25 24 23 27 27 N 1.28432 * 110.64213 * 0.02562 * 26 25 24 28 28 N 1.28947 * 110.19386 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47412 * 59.99972 * 1 2 3 30 30 H 1.09004 * 109.47531 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47442 * 299.99759 * 1 2 3 32 32 H 1.08007 * 119.92002 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.98714 * 179.74031 * 5 4 3 34 34 H 1.09000 * 109.46689 * 303.71948 * 10 9 7 35 35 H 1.08994 * 109.47067 * 63.71345 * 10 9 7 36 36 H 0.96999 * 119.99672 * 185.04607 * 15 14 12 37 37 H 1.08997 * 117.49842 * 0.02562 * 20 11 10 38 38 H 1.09001 * 117.49369 * 145.01955 * 20 11 10 39 39 H 1.08999 * 117.49545 * 214.97987 * 21 11 10 40 40 H 1.08999 * 117.50064 * 359.97405 * 21 11 10 41 41 H 1.08006 * 120.08285 * 179.97438 * 22 6 5 42 42 H 1.07993 * 126.36498 * 0.07947 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2874 2.3732 0.0058 5 6 1.9078 3.6029 0.0001 6 6 3.3036 3.6823 -0.0058 7 6 3.9687 4.9985 -0.0125 8 8 5.1784 5.0684 0.0774 9 8 3.2349 6.1237 -0.1183 10 6 3.9609 7.3764 -0.2283 11 6 2.9690 8.5410 -0.2450 12 6 1.8797 8.4523 -1.2826 13 1 0.8907 8.8251 -1.0607 14 6 2.1457 7.8950 -2.5154 15 7 3.3902 7.7130 -2.9001 16 14 0.7387 7.3984 -3.6393 17 1 0.3747 8.5433 -4.5122 18 1 1.1588 6.2489 -4.4801 19 1 -0.4361 7.0084 -2.8189 20 6 3.5066 9.9319 0.0976 21 6 2.6162 9.1879 1.0960 22 6 4.0671 2.5122 -0.0054 23 6 3.4386 1.2806 0.0004 24 7 4.2021 0.1028 0.0014 25 6 5.5484 -0.0017 -0.0034 26 7 5.8390 -1.2765 -0.0009 27 7 4.7678 -1.9851 0.0046 28 7 3.7289 -1.2213 0.0054 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2090 2.3140 0.0100 33 1 1.3157 4.5061 0.0005 34 1 4.6324 7.4831 0.6237 35 1 4.5413 7.3801 -1.1509 36 1 3.5788 7.3896 -3.7949 37 1 4.5670 10.0172 0.3346 38 1 3.0721 10.7827 -0.4273 39 1 1.5964 9.5495 1.2274 40 1 3.0905 8.7834 1.9901 41 1 5.1456 2.5695 -0.0103 42 1 6.2540 0.8158 -0.0076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781807708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:46 Heat of formation + Delta-G solvation = 52.061369 kcal Electronic energy + Delta-G solvation = -29560.624491 eV Core-core repulsion = 25317.399213 eV Total energy + Delta-G solvation = -4243.225278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.30465 -41.82471 -40.95620 -38.93954 -38.33036 -36.80508 -36.30872 -34.15462 -33.41103 -31.91850 -31.56464 -28.91455 -28.15493 -27.32465 -26.19095 -25.18160 -24.04782 -23.15780 -22.93877 -21.70785 -21.08495 -20.12924 -19.01441 -18.58137 -18.11666 -17.83100 -17.39306 -17.25472 -17.06934 -16.84607 -16.79320 -16.46576 -15.59582 -15.52863 -15.19856 -14.94927 -14.42565 -14.33997 -14.18038 -13.85978 -13.79380 -13.55066 -13.44101 -13.03090 -12.81625 -12.79100 -12.71683 -12.30906 -12.28513 -12.19104 -12.12749 -12.09888 -11.75849 -11.61843 -11.39391 -11.25657 -11.09122 -10.61300 -10.23237 -10.01728 -9.49768 -8.06922 -6.12944 -0.80514 -0.50085 0.37949 0.58928 1.13160 1.43083 1.44025 1.48092 1.56778 1.80851 1.98143 2.44079 2.45672 2.89511 3.03938 3.24716 3.49007 3.54439 3.56945 3.73138 3.82576 3.93856 4.03624 4.23330 4.28739 4.32971 4.35054 4.38669 4.38773 4.56473 4.67977 4.73231 4.77431 4.89877 4.95578 4.99960 5.04581 5.10119 5.22063 5.29011 5.42221 5.55361 5.73093 5.85429 6.05325 6.37697 6.78254 6.89660 7.25677 7.47944 8.94546 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.003140 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.301207 B = 8916.471918 C = 9780.634198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.303 6.303 3 C 0.180 3.820 4 C -0.191 4.191 5 C -0.002 4.002 6 C -0.150 4.150 7 C 0.501 3.499 8 O -0.545 6.545 9 O -0.329 6.329 10 C 0.127 3.873 11 C 0.013 3.987 12 C -0.501 4.501 13 H 0.058 0.942 14 C 0.039 3.961 15 N -0.905 5.905 16 Si 0.942 3.058 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.258 1.258 20 C -0.190 4.190 21 C -0.185 4.185 22 C -0.010 4.010 23 C 0.065 3.935 24 N -0.316 5.316 25 C 0.232 3.768 26 N -0.352 5.352 27 N -0.070 5.070 28 N -0.069 5.069 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.185 0.815 33 H 0.157 0.843 34 H 0.038 0.962 35 H 0.080 0.920 36 H 0.260 0.740 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.170 0.830 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.057 -12.054 6.479 14.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.213 6.213 3 C 0.130 3.870 4 C -0.210 4.210 5 C -0.021 4.021 6 C -0.152 4.152 7 C 0.348 3.652 8 O -0.438 6.438 9 O -0.244 6.244 10 C 0.053 3.947 11 C 0.013 3.987 12 C -0.538 4.538 13 H 0.076 0.924 14 C -0.162 4.162 15 N -0.542 5.542 16 Si 0.767 3.233 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.182 1.182 20 C -0.228 4.228 21 C -0.222 4.222 22 C -0.031 4.031 23 C -0.028 4.028 24 N -0.106 5.106 25 C -0.064 4.064 26 N -0.202 5.202 27 N -0.065 5.065 28 N -0.055 5.055 29 H 0.094 0.906 30 H 0.138 0.862 31 H 0.099 0.901 32 H 0.202 0.798 33 H 0.175 0.825 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.187 0.813 42 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -4.843 -13.783 6.391 15.946 hybrid contribution -0.292 1.293 -0.834 1.566 sum -5.135 -12.490 5.557 14.603 Atomic orbital electron populations 1.23614 0.75115 1.06357 1.03439 1.86304 1.24466 1.24587 1.85965 1.19061 0.89597 0.86785 0.91602 1.21466 1.02547 0.89212 1.07734 1.21696 0.92713 0.99578 0.88131 1.18729 0.94442 0.89147 1.12893 1.21301 0.85383 0.86094 0.72441 1.90750 1.16181 1.88595 1.48313 1.86523 1.40890 1.15492 1.81471 1.22523 0.93097 0.78860 1.00193 1.18986 0.96683 0.88808 0.94237 1.20617 0.95500 1.39735 0.97915 0.92405 1.25502 0.97193 0.94521 0.98947 1.69962 1.19471 1.46160 1.18652 0.85803 0.80675 0.77931 0.78859 1.20769 1.21218 1.18204 1.22976 0.97804 0.97496 1.04540 1.22989 0.99767 1.06060 0.93425 1.20716 1.01894 0.87144 0.93316 1.16556 0.87903 0.82318 1.16004 1.48880 1.06530 1.06365 1.48868 1.28297 0.84531 0.98515 0.95069 1.74421 1.21501 1.01536 1.22696 1.78051 0.93088 1.23932 1.11405 1.82851 1.18394 0.83277 1.20990 0.90626 0.86169 0.90145 0.79768 0.82492 0.94329 0.90192 0.93014 0.90237 0.90205 0.89607 0.89377 0.81292 0.70401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.20 16 2 O -0.30 -5.95 8.65 -90.43 -0.78 -6.73 16 3 C 0.18 3.70 6.71 22.74 0.15 3.85 16 4 C -0.19 -3.37 9.01 22.31 0.20 -3.17 16 5 C 0.00 -0.06 9.60 22.53 0.22 0.16 16 6 C -0.15 -4.18 5.87 -20.11 -0.12 -4.29 16 7 C 0.50 18.64 7.88 70.26 0.55 19.19 16 8 O -0.54 -22.14 16.07 19.83 0.32 -21.82 16 9 O -0.33 -13.93 9.12 -56.65 -0.52 -14.44 16 10 C 0.13 5.78 4.66 71.98 0.34 6.12 16 11 C 0.01 0.61 2.10 -52.93 -0.11 0.50 16 12 C -0.50 -25.13 8.75 25.60 0.22 -24.91 16 13 H 0.06 2.88 7.86 -2.91 -0.02 2.86 16 14 C 0.04 1.97 5.12 84.66 0.43 2.41 16 15 N -0.90 -47.93 10.97 21.45 0.24 -47.69 16 16 Si 0.94 39.61 29.57 68.60 2.03 41.64 16 17 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.29 -12.03 7.11 99.48 0.71 -11.33 16 19 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 20 C -0.19 -7.84 9.96 30.62 0.30 -7.54 16 21 C -0.19 -7.14 9.92 30.62 0.30 -6.84 16 22 C -0.01 -0.22 9.02 22.63 0.20 -0.02 16 23 C 0.07 1.46 6.71 38.09 0.26 1.72 16 24 N -0.32 -7.51 3.86 -190.87 -0.74 -8.25 16 25 C 0.23 4.63 12.15 180.19 2.19 6.82 16 26 N -0.35 -9.19 12.16 -60.15 -0.73 -9.92 16 27 N -0.07 -2.05 13.39 37.02 0.50 -1.56 16 28 N -0.07 -1.95 12.08 37.02 0.45 -1.50 16 29 H 0.08 0.59 7.66 -2.39 -0.02 0.57 16 30 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.08 0.54 7.64 -2.39 -0.02 0.53 16 32 H 0.19 1.94 6.27 -2.91 -0.02 1.92 16 33 H 0.16 3.78 7.61 -2.91 -0.02 3.75 16 34 H 0.04 1.66 7.95 -2.39 -0.02 1.64 16 35 H 0.08 4.15 6.12 -2.39 -0.01 4.14 16 36 H 0.26 13.37 8.32 -92.71 -0.77 12.60 16 37 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 38 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 40 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.17 3.24 6.47 -2.91 -0.02 3.22 16 42 H 0.28 2.67 7.19 -2.91 -0.02 2.65 16 Total: -1.00 -67.89 368.24 8.10 -59.80 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 1.08 Total: 15.27 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 6.26 Total: -4.80 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -0.29 Total: -68.92 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -0.98 Total: -42.99 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -67.89 8.10 -59.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781807708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.859 kcal (2) G-P(sol) polarization free energy of solvation -67.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds