Wall clock time and date at job start Wed Apr 1 2020 02:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99983 * 2 1 4 4 H 1.48497 * 109.47425 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47247 * 300.00915 * 3 2 1 6 6 H 1.48501 * 109.46963 * 60.00235 * 3 2 1 7 7 C 1.38811 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00158 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99970 * 359.97438 * 7 2 1 10 10 C 1.47431 * 125.64810 * 0.04615 * 9 7 2 11 11 C 1.55392 * 104.87127 * 204.09658 * 10 9 7 12 12 H 1.09001 * 111.02055 * 80.98222 * 11 10 9 13 13 O 1.42905 * 111.18477 * 204.98034 * 11 10 9 14 14 C 1.55157 * 101.36576 * 323.01456 * 11 10 9 15 15 H 1.09002 * 110.72219 * 277.04408 * 14 11 10 16 16 N 1.46505 * 110.71610 * 153.94856 * 14 11 10 17 17 C 1.34779 * 119.99500 * 157.44358 * 16 14 11 18 18 O 1.21513 * 120.00199 * 359.97438 * 17 16 14 19 19 C 1.48158 * 119.99594 * 180.02562 * 17 16 14 20 20 C 1.39245 * 119.68774 * 179.97438 * 19 17 16 21 21 C 1.38705 * 119.19225 * 179.97438 * 20 19 17 22 22 C 1.38419 * 118.55151 * 359.97438 * 21 20 19 23 23 C 1.39245 * 119.30075 * 0.02562 * 22 21 20 24 24 N 1.39859 * 119.61762 * 180.02562 * 23 22 21 25 25 C 1.34812 * 126.84773 * 179.71446 * 24 23 22 26 26 N 1.30807 * 108.01877 * 179.83118 * 25 24 23 27 27 C 1.33294 * 109.84472 * 0.44215 * 26 25 24 28 28 N 1.30708 * 109.01829 * 359.72545 * 27 26 25 29 29 N 1.31978 * 120.76843 * 359.74522 * 23 22 21 30 30 C 1.47019 * 125.65046 * 180.02562 * 9 7 2 31 31 H 0.96999 * 120.00486 * 359.97438 * 1 2 3 32 32 H 1.08999 * 110.36190 * 322.92710 * 10 9 7 33 33 H 1.08999 * 110.36356 * 85.25231 * 10 9 7 34 34 H 0.96704 * 113.99865 * 292.04091 * 13 11 10 35 35 H 0.96996 * 120.00388 * 337.43707 * 16 14 11 36 36 H 1.08006 * 120.40177 * 359.95325 * 20 19 17 37 37 H 1.08001 * 120.72522 * 180.02562 * 21 20 19 38 38 H 1.07999 * 120.34825 * 180.02562 * 22 21 20 39 39 H 1.08005 * 125.98824 * 359.96433 * 25 24 23 40 40 H 1.08001 * 125.48984 * 179.72533 * 27 26 25 41 41 H 1.09001 * 109.88251 * 59.55492 * 30 9 7 42 42 H 1.09003 * 110.01193 * 298.46867 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1415 -2.5332 -0.0010 11 6 -0.4036 -3.9367 0.6124 12 1 -0.3532 -3.9034 1.7007 13 8 -1.6574 -4.4652 0.1756 14 6 0.7785 -4.7524 0.0255 15 1 0.5462 -5.0978 -0.9820 16 7 1.1101 -5.8835 0.8956 17 6 1.7592 -6.9525 0.3930 18 8 2.0688 -6.9784 -0.7817 19 6 2.0940 -8.0967 1.2728 20 6 2.7642 -9.1980 0.7467 21 6 3.0731 -10.2632 1.5797 22 6 2.7018 -10.1911 2.9112 23 6 2.0335 -9.0598 3.3720 24 7 1.6558 -8.9797 4.7163 25 6 1.0122 -7.9580 5.3157 26 7 0.8410 -8.2703 6.5743 27 6 1.3663 -9.4709 6.8181 28 7 1.8767 -9.9450 5.7121 29 7 1.7572 -8.0598 2.5563 30 6 1.9318 -3.7274 -0.0005 31 1 -0.4851 0.8400 0.0004 32 1 -0.5994 -1.7590 0.6148 33 1 -0.5270 -2.4865 -1.0195 34 1 -2.4259 -3.9876 0.5170 35 1 0.8627 -5.8630 1.8332 36 1 3.0399 -9.2227 -0.2973 37 1 3.5927 -11.1297 1.1979 38 1 2.9281 -11.0038 3.5856 39 1 0.6920 -7.0429 4.8396 40 1 1.3697 -9.9712 7.7752 41 1 2.5579 -3.8510 0.8832 42 1 2.5304 -3.8659 -0.9009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077906348.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:49 Heat of formation + Delta-G solvation = 97.737866 kcal Electronic energy + Delta-G solvation = -29162.552277 eV Core-core repulsion = 24953.600431 eV Total energy + Delta-G solvation = -4208.951845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.138 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.74637 -40.97317 -39.39411 -37.80185 -35.13532 -34.69735 -34.29864 -33.21692 -31.81975 -31.57855 -30.50028 -28.50800 -27.14666 -25.43449 -24.99391 -24.24407 -22.45550 -22.11482 -20.99951 -20.62577 -20.03972 -19.01565 -18.03641 -17.12138 -16.88704 -16.49756 -16.46963 -16.13246 -15.70649 -15.55815 -15.17025 -14.86382 -14.52360 -14.31804 -14.11191 -13.86345 -13.75235 -13.32547 -12.95017 -12.72049 -12.61005 -12.39101 -11.98473 -11.56674 -11.41026 -11.32230 -11.03876 -10.88362 -10.83563 -10.51367 -10.50108 -10.31132 -10.18924 -10.04111 -9.94241 -9.77612 -9.34058 -9.16281 -8.87754 -8.75546 -6.95900 -5.75506 -3.18116 0.00968 0.34046 1.41264 1.44937 2.46556 2.59575 2.96746 3.35737 3.41660 3.44028 3.46088 3.59778 3.90074 3.95503 4.35276 4.42881 4.45178 4.47929 4.56942 4.69206 4.90584 4.96252 5.19868 5.35519 5.38508 5.56534 5.57191 5.61115 5.67647 5.79305 5.79891 5.93561 6.02077 6.12360 6.35253 6.40904 6.60074 6.78734 6.95358 7.27742 7.47823 7.54478 7.61159 7.68980 8.05610 8.13783 8.22737 9.10494 9.70847 10.32676 11.28809 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.002640 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.685226 B =10602.016025 C =11476.469378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.918 3.082 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.223 4.223 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.130 3.870 11 C 0.067 3.933 12 H 0.063 0.937 13 O -0.565 6.565 14 C 0.138 3.862 15 H 0.104 0.896 16 N -0.690 5.690 17 C 0.570 3.430 18 O -0.524 6.524 19 C 0.123 3.877 20 C -0.116 4.116 21 C -0.057 4.057 22 C -0.138 4.138 23 C 0.361 3.639 24 N -0.334 5.334 25 C 0.296 3.704 26 N -0.538 5.538 27 C 0.215 3.785 28 N -0.312 5.312 29 N -0.478 5.478 30 C 0.130 3.870 31 H 0.253 0.747 32 H 0.114 0.886 33 H 0.026 0.974 34 H 0.378 0.622 35 H 0.407 0.593 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.229 0.771 40 H 0.227 0.773 41 H 0.031 0.969 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.972 -21.696 9.082 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.748 3.252 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.005 3.995 11 C 0.007 3.993 12 H 0.081 0.919 13 O -0.370 6.370 14 C 0.034 3.966 15 H 0.122 0.878 16 N -0.339 5.339 17 C 0.353 3.647 18 O -0.400 6.400 19 C -0.017 4.017 20 C -0.137 4.137 21 C -0.083 4.083 22 C -0.160 4.160 23 C 0.131 3.869 24 N -0.120 5.120 25 C 0.000 4.000 26 N -0.264 5.264 27 C -0.087 4.087 28 N -0.138 5.138 29 N -0.194 5.194 30 C 0.003 3.997 31 H 0.064 0.936 32 H 0.131 0.869 33 H 0.044 0.956 34 H 0.225 0.775 35 H 0.243 0.757 36 H 0.178 0.822 37 H 0.173 0.827 38 H 0.171 0.829 39 H 0.245 0.755 40 H 0.243 0.757 41 H 0.049 0.951 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.297 -21.631 8.400 23.318 hybrid contribution 0.359 0.689 0.380 0.865 sum 2.656 -20.942 8.780 22.863 Atomic orbital electron populations 1.69734 1.04937 1.24916 1.57615 1.24801 0.95786 0.97843 1.02134 0.85949 0.78688 0.83270 0.77291 1.20450 1.21648 1.21655 1.19146 0.90644 0.82060 1.43212 0.90126 1.44283 1.01493 0.99731 1.87228 1.22640 0.85502 0.91798 0.99603 1.23723 0.82553 0.95957 0.97110 0.91879 1.86407 1.15546 1.58820 1.76247 1.22151 0.94494 0.84865 0.95083 0.87812 1.45846 1.56783 1.17238 1.14069 1.17680 0.78812 0.81699 0.86504 1.90826 1.53487 1.80163 1.15496 1.21021 0.96920 0.95618 0.88093 1.22265 0.96375 0.92307 1.02798 1.21613 0.96146 0.98599 0.91937 1.21861 0.98747 0.98134 0.97284 1.17527 0.96082 0.91697 0.81609 1.47526 1.43262 1.14751 1.06454 1.26520 0.90582 0.94351 0.88554 1.70763 1.25788 1.15520 1.14309 1.26297 0.93440 0.90937 0.98060 1.78137 1.26212 1.12516 0.96942 1.66625 1.20727 1.27614 1.04423 1.21614 0.93547 0.85341 0.99165 0.93602 0.86880 0.95552 0.77459 0.75707 0.82210 0.82697 0.82854 0.75459 0.75711 0.95131 0.94687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.94 10.09 55.49 0.56 -25.38 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.22 -6.07 10.27 -15.06 -0.15 -6.22 16 8 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 9 N -0.60 -14.99 3.40 -169.76 -0.58 -15.57 16 10 C 0.13 3.02 5.65 -2.26 -0.01 3.01 16 11 C 0.07 1.22 4.07 -24.32 -0.10 1.12 16 12 H 0.06 1.06 8.01 -51.93 -0.42 0.65 16 13 O -0.57 -9.38 13.48 -35.23 -0.48 -9.86 16 14 C 0.14 2.53 3.00 -66.09 -0.20 2.34 16 15 H 0.10 2.08 7.62 -51.93 -0.40 1.69 16 16 N -0.69 -10.40 5.11 -52.87 -0.27 -10.67 16 17 C 0.57 8.54 7.81 -12.19 -0.10 8.44 16 18 O -0.52 -9.30 16.00 5.35 0.09 -9.21 16 19 C 0.12 1.46 6.75 -83.02 -0.56 0.90 16 20 C -0.12 -1.08 9.63 -39.03 -0.38 -1.45 16 21 C -0.06 -0.39 10.16 -39.34 -0.40 -0.79 16 22 C -0.14 -1.13 9.72 -39.14 -0.38 -1.51 16 23 C 0.36 3.75 7.56 -154.49 -1.17 2.58 16 24 N -0.33 -3.52 3.81 -13.33 -0.05 -3.57 16 25 C 0.30 2.97 12.26 -90.33 -1.11 1.86 16 26 N -0.54 -5.69 11.19 -15.73 -0.18 -5.86 16 27 C 0.22 1.89 13.03 -91.77 -1.20 0.69 16 28 N -0.31 -3.16 12.01 29.30 0.35 -2.81 16 29 N -0.48 -5.36 9.07 -8.84 -0.08 -5.44 16 30 C 0.13 2.76 6.99 -3.07 -0.02 2.73 16 31 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.11 2.88 5.87 -51.93 -0.31 2.57 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.38 4.74 9.12 45.56 0.42 5.16 16 35 H 0.41 5.36 7.87 -40.82 -0.32 5.04 16 36 H 0.16 1.36 7.63 -52.48 -0.40 0.96 16 37 H 0.16 0.51 8.06 -52.49 -0.42 0.09 16 38 H 0.15 1.07 7.72 -52.49 -0.41 0.66 16 39 H 0.23 1.75 8.06 -52.48 -0.42 1.33 16 40 H 0.23 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.03 0.63 8.03 -51.93 -0.42 0.22 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 365.89 15.07 5.51 5.51 Total: -1.00 -34.13 365.89 -9.91 -44.04 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -3.90 Total: 8.88 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: -5.86 Total: 13.33 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -0.24 Total: -69.29 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.39 Total: -19.07 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.13 -9.91 -44.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077906348.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.781 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds