Wall clock time and date at job start Wed Apr 1 2020 02:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00347 * 2 1 4 4 H 1.48494 * 109.47398 * 274.96885 * 3 2 1 5 5 H 1.48496 * 109.46829 * 34.97031 * 3 2 1 6 6 H 1.48500 * 109.46963 * 154.96729 * 3 2 1 7 7 C 1.38816 * 119.99358 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99579 * 170.72826 * 7 2 1 9 9 N 1.36930 * 120.00517 * 350.72593 * 7 2 1 10 10 C 1.46775 * 125.35912 * 7.72905 * 9 7 2 11 11 C 1.53916 * 107.62701 * 178.78513 * 10 9 7 12 12 H 1.09005 * 109.51964 * 100.77125 * 11 10 9 13 13 O 1.40848 * 110.30587 * 221.41047 * 11 10 9 14 14 C 1.41323 * 118.30898 * 68.00908 * 13 11 10 15 15 C 1.51958 * 111.60662 * 56.89550 * 14 13 11 16 16 N 1.44959 * 111.94087 * 319.69625 * 15 14 13 17 17 C 1.34780 * 117.34355 * 203.73416 * 16 15 14 18 18 O 1.21572 * 119.99336 * 2.82321 * 17 16 15 19 19 C 1.47688 * 120.00458 * 182.82697 * 17 16 15 20 20 C 1.41605 * 120.02923 * 14.23958 * 19 17 16 21 21 C 1.35785 * 119.54383 * 179.97438 * 20 19 17 22 22 C 1.40855 * 119.39357 * 0.02562 * 21 20 19 23 23 N 1.32491 * 133.41586 * 179.97438 * 22 21 20 24 24 N 1.28533 * 110.23936 * 179.97438 * 23 22 21 25 25 N 1.28981 * 110.84733 * 0.02562 * 24 23 22 26 26 N 1.36924 * 119.93413 * 359.97438 * 22 21 20 27 27 C 1.35503 * 120.84517 * 359.97438 * 26 22 21 28 28 C 1.44547 * 125.32134 * 24.01277 * 16 15 14 29 29 H 1.09004 * 109.64267 * 106.19212 * 28 16 15 30 30 C 1.46871 * 125.36672 * 187.70992 * 9 7 2 31 31 H 0.97003 * 119.99472 * 0.02562 * 1 2 3 32 32 H 1.09006 * 109.82446 * 59.26841 * 10 9 7 33 33 H 1.08997 * 109.89456 * 298.35169 * 10 9 7 34 34 H 1.08998 * 109.05245 * 296.35120 * 14 13 11 35 35 H 1.09002 * 108.99832 * 177.40425 * 14 13 11 36 36 H 1.08995 * 108.98872 * 199.06240 * 15 14 13 37 37 H 1.08995 * 108.98808 * 80.32709 * 15 14 13 38 38 H 1.07992 * 120.22526 * 359.95303 * 20 19 17 39 39 H 1.08004 * 120.30017 * 180.02562 * 21 20 19 40 40 H 1.07998 * 119.82940 * 179.97438 * 27 26 22 41 41 H 1.09004 * 110.06156 * 317.05381 * 30 9 7 42 42 H 1.08999 * 110.07089 * 78.57660 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3928 2.1070 -1.3947 5 1 1.5042 2.6199 0.8024 6 1 3.5964 1.4119 0.5924 7 6 2.0101 -1.2023 -0.0005 8 1 3.0795 -1.2083 -0.1512 9 7 1.3389 -2.3804 0.1900 10 6 -0.1205 -2.5272 0.2452 11 6 -0.4314 -4.0216 0.4431 12 1 -0.6680 -4.2088 1.4906 13 8 -1.5218 -4.4048 -0.3619 14 6 -1.3481 -4.4162 -1.7644 15 6 -0.1930 -5.3128 -2.1778 16 7 0.9376 -5.1887 -1.2791 17 6 2.1522 -5.5156 -1.7633 18 8 2.2735 -5.8472 -2.9266 19 6 3.3356 -5.4710 -0.8808 20 6 3.1699 -5.3839 0.5228 21 6 4.2648 -5.3440 1.3250 22 6 5.5480 -5.3896 0.7460 23 7 6.7743 -5.3687 1.2471 24 7 7.6423 -5.4339 0.3014 25 7 7.0633 -5.4995 -0.8493 26 7 5.6814 -5.4738 -0.6141 27 6 4.5912 -5.5148 -1.4178 28 6 0.8677 -4.7484 0.0959 29 1 1.0036 -5.6012 0.7611 30 6 1.9657 -3.6963 0.3710 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5627 -2.1782 -0.6880 33 1 -0.5197 -1.9527 1.0810 34 1 -1.1502 -3.4004 -2.1066 35 1 -2.2639 -4.7771 -2.2324 36 1 0.1233 -5.0418 -3.1851 37 1 -0.5316 -6.3488 -2.1807 38 1 2.1797 -5.3490 0.9522 39 1 4.1526 -5.2780 2.3972 40 1 4.7154 -5.5808 -2.4886 41 1 2.7869 -3.8196 -0.3351 42 1 2.3316 -3.7990 1.3926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083142000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:53 Heat of formation + Delta-G solvation = 215.382768 kcal Electronic energy + Delta-G solvation = -31802.383648 eV Core-core repulsion = 27598.533269 eV Total energy + Delta-G solvation = -4203.850380 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.138 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.59017 -42.04648 -39.16843 -38.47757 -36.70606 -35.17843 -34.20895 -33.01334 -32.08590 -30.81884 -30.37105 -28.45992 -28.16867 -25.88451 -24.73122 -24.24895 -23.55670 -22.86941 -21.72155 -20.70250 -19.44891 -19.06061 -17.99558 -17.83760 -16.93846 -16.84703 -16.64307 -16.12042 -15.59858 -15.30356 -15.26974 -15.11500 -14.78208 -14.28401 -14.06427 -13.85908 -13.22027 -13.20881 -13.04273 -12.72083 -12.64919 -12.61163 -12.19251 -12.16670 -11.83383 -11.41728 -11.25579 -11.13080 -11.09271 -10.88877 -10.81459 -10.62605 -10.39236 -10.24119 -9.99134 -9.59647 -9.39313 -8.84149 -8.74051 -8.61568 -7.16405 -6.01948 -3.35402 -0.01012 0.40391 1.51444 1.83357 2.49085 2.66070 3.10172 3.24965 3.32569 3.33674 3.57049 3.78940 3.87251 4.07740 4.17276 4.23938 4.43339 4.53494 4.69248 4.73212 4.79920 4.99855 5.12762 5.16681 5.20934 5.32775 5.39084 5.43626 5.47372 5.52609 5.60775 5.69611 5.74985 5.81040 5.83068 5.90528 5.99671 6.15173 6.35596 6.98938 7.07246 7.24854 7.46411 7.59649 7.83821 7.92433 8.28317 8.89496 9.49173 10.07859 11.08578 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.009219 B = 0.005374 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.630311 B = 5209.360185 C = 7226.119637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.005 3.995 3 Si 0.910 3.090 4 H -0.287 1.287 5 H -0.286 1.286 6 H -0.279 1.279 7 C -0.241 4.241 8 H 0.078 0.922 9 N -0.588 5.588 10 C 0.147 3.853 11 C 0.071 3.929 12 H 0.118 0.882 13 O -0.366 6.366 14 C 0.057 3.943 15 C 0.087 3.913 16 N -0.570 5.570 17 C 0.573 3.427 18 O -0.529 6.529 19 C -0.150 4.150 20 C -0.048 4.048 21 C -0.131 4.131 22 C 0.264 3.736 23 N -0.330 5.330 24 N -0.010 5.010 25 N -0.110 5.110 26 N -0.310 5.310 27 C 0.167 3.833 28 C 0.076 3.924 29 H 0.100 0.900 30 C 0.094 3.906 31 H 0.257 0.743 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.210 0.790 39 H 0.172 0.828 40 H 0.191 0.809 41 H 0.066 0.934 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.273 -12.942 0.723 13.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.193 4.193 3 Si 0.740 3.260 4 H -0.214 1.214 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.369 4.369 8 H 0.096 0.904 9 N -0.315 5.315 10 C 0.022 3.978 11 C 0.012 3.988 12 H 0.136 0.864 13 O -0.283 6.283 14 C -0.020 4.020 15 C -0.036 4.036 16 N -0.302 5.302 17 C 0.360 3.640 18 O -0.406 6.406 19 C -0.159 4.159 20 C -0.072 4.072 21 C -0.155 4.155 22 C 0.009 3.991 23 N -0.189 5.189 24 N -0.003 5.003 25 N -0.094 5.094 26 N -0.089 5.089 27 C 0.037 3.963 28 C -0.029 4.029 29 H 0.117 0.883 30 C -0.032 4.032 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.125 0.875 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.226 0.774 39 H 0.190 0.810 40 H 0.208 0.792 41 H 0.083 0.917 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.844 -12.906 0.111 12.934 hybrid contribution -0.076 1.217 -0.376 1.276 sum -0.921 -11.688 -0.265 11.727 Atomic orbital electron populations 1.69946 1.04984 1.25754 1.54972 1.24832 0.95707 0.97867 1.00903 0.86138 0.78974 0.83194 0.77731 1.21445 1.21212 1.20385 1.18958 0.91608 0.82155 1.44141 0.90423 1.44268 1.01080 1.01326 1.84806 1.21857 0.84807 0.88393 1.02764 1.22996 0.83936 0.96863 0.95039 0.86442 1.86907 1.36604 1.88189 1.16633 1.22321 0.97601 0.99834 0.82266 1.21560 0.86622 1.00834 0.94540 1.46378 1.06912 1.64849 1.12109 1.17539 0.82481 0.77581 0.86378 1.90801 1.85169 1.48109 1.16554 1.19574 0.93020 1.08415 0.94880 1.23634 1.04049 0.87364 0.92198 1.20199 0.85508 1.07391 1.02358 1.23114 0.97057 0.97199 0.81683 1.75155 0.94883 1.26178 1.22679 1.77833 1.23146 1.06314 0.93013 1.82796 0.80701 1.28478 1.17375 1.48635 1.07635 1.44985 1.07658 1.21474 0.81986 0.94749 0.98076 1.22592 1.00678 0.97056 0.82567 0.88321 1.23291 0.93865 0.86431 0.99567 0.93267 0.92523 0.91908 0.91815 0.87470 0.88769 0.91236 0.77434 0.81042 0.79189 0.91739 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.27 10.35 55.49 0.57 -23.70 16 2 C 0.00 0.13 5.47 -17.43 -0.10 0.03 16 3 Si 0.91 20.86 29.56 -169.99 -5.03 15.83 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.24 -6.05 10.23 -15.06 -0.15 -6.20 16 8 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 9 N -0.59 -12.57 3.39 -175.78 -0.60 -13.17 16 10 C 0.15 2.96 5.03 -3.41 -0.02 2.94 16 11 C 0.07 1.03 3.82 -26.33 -0.10 0.93 16 12 H 0.12 1.44 8.14 -51.93 -0.42 1.01 16 13 O -0.37 -5.26 10.24 -34.45 -0.35 -5.61 16 14 C 0.06 0.72 6.72 36.63 0.25 0.97 16 15 C 0.09 1.07 6.19 -5.40 -0.03 1.04 16 16 N -0.57 -7.66 3.08 -192.03 -0.59 -8.25 16 17 C 0.57 8.09 7.08 -12.40 -0.09 8.00 16 18 O -0.53 -8.52 15.73 5.30 0.08 -8.44 16 19 C -0.15 -1.89 4.05 -105.33 -0.43 -2.31 16 20 C -0.05 -0.52 5.26 -39.96 -0.21 -0.73 16 21 C -0.13 -1.44 9.71 -39.47 -0.38 -1.83 16 22 C 0.26 3.80 8.02 -156.28 -1.25 2.55 16 23 N -0.33 -5.38 12.26 31.10 0.38 -5.00 16 24 N -0.01 -0.17 13.35 60.35 0.81 0.64 16 25 N -0.11 -1.80 13.99 60.35 0.84 -0.95 16 26 N -0.31 -4.57 3.92 -12.06 -0.05 -4.62 16 27 C 0.17 2.17 10.76 -16.51 -0.18 1.99 16 28 C 0.08 0.96 2.77 -68.24 -0.19 0.77 16 29 H 0.10 0.87 6.03 -51.93 -0.31 0.56 16 30 C 0.09 1.47 4.36 -3.81 -0.02 1.46 16 31 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.06 1.32 5.94 -51.93 -0.31 1.01 16 33 H 0.06 1.44 7.33 -51.93 -0.38 1.06 16 34 H 0.06 0.97 6.81 -51.93 -0.35 0.62 16 35 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.22 7.30 -51.93 -0.38 0.84 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.21 1.88 2.20 -85.39 -0.19 1.69 16 39 H 0.17 1.39 8.06 -52.48 -0.42 0.96 16 40 H 0.19 2.23 7.64 -52.49 -0.40 1.83 16 41 H 0.07 1.08 3.99 -51.93 -0.21 0.87 16 42 H 0.05 0.70 6.25 -51.93 -0.32 0.38 16 LS Contribution 328.81 15.07 4.96 4.96 Total: -1.00 -31.45 328.81 -5.96 -37.42 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.09 Total: 1.28 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: -2.90 Total: 9.61 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 1.37 Total: -55.04 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.27 Total: -14.05 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.45 -5.96 -37.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083142000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 252.798 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 221.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 215.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds