Wall clock time and date at job start Wed Apr 1 2020 02:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99821 * 2 1 4 4 C 1.53006 * 109.46748 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.46866 * 179.97438 * 4 3 2 6 6 N 1.29945 * 126.28943 * 90.02241 * 5 4 3 7 7 O 1.21301 * 110.25300 * 179.97438 * 6 5 4 8 8 C 1.33641 * 109.81235 * 0.02562 * 7 6 5 9 9 C 1.50699 * 126.55289 * 179.97438 * 8 7 6 10 10 N 1.46896 * 109.47478 * 269.97996 * 9 8 7 11 11 C 1.46901 * 111.00448 * 180.02562 * 10 9 8 12 12 C 1.52988 * 109.47328 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47151 * 179.97438 * 12 11 10 14 14 C 1.34785 * 120.00136 * 179.97438 * 13 12 11 15 15 O 1.21282 * 119.99517 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99978 * 179.97438 * 14 13 12 17 17 S 1.81001 * 109.47076 * 180.02562 * 16 14 13 18 18 C 1.76203 * 99.99838 * 180.02562 * 17 16 14 19 19 H 1.07993 * 120.00264 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99447 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00457 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99592 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47068 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47248 * 120.00332 * 22 20 18 25 25 H 1.48502 * 109.46916 * 240.00509 * 22 20 18 26 26 N 1.31132 * 106.89893 * 359.76747 * 8 7 6 27 27 H 1.09002 * 109.47367 * 300.00715 * 1 2 3 28 28 H 1.09000 * 109.46841 * 59.99911 * 1 2 3 29 29 H 1.08993 * 109.47448 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47490 * 59.99859 * 3 2 1 31 31 H 1.09001 * 109.47232 * 299.99213 * 3 2 1 32 32 H 1.08993 * 109.46955 * 299.99993 * 4 3 2 33 33 H 1.09000 * 109.47050 * 59.99822 * 4 3 2 34 34 H 1.08994 * 109.46823 * 29.98007 * 9 8 7 35 35 H 1.09001 * 109.47261 * 149.97419 * 9 8 7 36 36 H 1.00900 * 111.00041 * 56.04246 * 10 9 8 37 37 H 1.09002 * 109.46319 * 299.99924 * 11 10 9 38 38 H 1.09003 * 109.46791 * 59.99586 * 11 10 9 39 39 H 1.08997 * 109.47475 * 299.99838 * 12 11 10 40 40 H 1.09000 * 109.47146 * 59.99649 * 12 11 10 41 41 H 0.96996 * 119.99895 * 0.02562 * 13 12 11 42 42 H 1.08997 * 109.47288 * 300.00706 * 16 14 13 43 43 H 1.09003 * 109.46549 * 60.00327 * 16 14 13 44 44 H 0.96997 * 119.99998 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1484 2.5614 0.0000 6 7 4.4612 3.2645 1.0471 7 8 4.9358 4.3291 0.7115 8 6 4.9715 4.4090 -0.6220 9 6 5.4868 5.5661 -1.4384 10 7 4.3890 6.5053 -1.7042 11 6 4.8551 7.6485 -2.5003 12 6 3.6864 8.6019 -2.7566 13 7 4.1515 9.7423 -3.5500 14 6 3.2886 10.7169 -3.8994 15 8 2.1271 10.6500 -3.5566 16 6 3.7671 11.8903 -4.7150 17 16 2.3844 13.0182 -5.0185 18 6 3.2037 14.2592 -5.9637 19 1 4.2568 14.1637 -6.1829 20 6 2.4952 15.3590 -6.4273 21 7 1.2115 15.4752 -6.1605 22 14 3.3636 16.6744 -7.4300 23 1 4.7948 16.3113 -7.5890 24 1 2.7271 16.7779 -8.7676 25 1 3.2595 17.9798 -6.7298 26 7 4.4765 3.2862 -1.0845 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6886 1.8465 0.8900 31 1 1.6887 1.8464 -0.8901 32 1 3.8567 0.6439 0.8908 33 1 3.8574 0.6435 -0.8891 34 1 6.2762 6.0767 -0.8870 35 1 5.8848 5.1956 -2.3831 36 1 3.9607 6.8137 -0.8442 37 1 5.6404 8.1737 -1.9565 38 1 5.2484 7.2920 -3.4523 39 1 2.9015 8.0765 -3.3005 40 1 3.2928 8.9583 -1.8048 41 1 5.0803 9.7956 -3.8245 42 1 4.5514 12.4158 -4.1702 43 1 4.1618 11.5343 -5.6667 44 1 0.7165 16.2440 -6.4842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123787355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:42 Heat of formation + Delta-G solvation = -12.847795 kcal Electronic energy + Delta-G solvation = -25361.489139 eV Core-core repulsion = 21250.893139 eV Total energy + Delta-G solvation = -4110.595999 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.10942 -39.27184 -38.56441 -37.48737 -36.55507 -34.78675 -33.47855 -32.44511 -31.57337 -30.31837 -28.53037 -27.18495 -25.95934 -25.43101 -24.86085 -23.50015 -22.55651 -21.55597 -20.43015 -18.65977 -18.09666 -17.85351 -17.06027 -16.96684 -16.52914 -16.35494 -16.10631 -15.70297 -15.54778 -15.09010 -14.82593 -14.74563 -14.32158 -14.06146 -13.85931 -13.76755 -13.53760 -13.14897 -12.98631 -12.69752 -12.55183 -12.30674 -12.07956 -12.00902 -11.92610 -11.69462 -11.57247 -11.48130 -11.08366 -11.03706 -10.77496 -10.50861 -10.23431 -9.82547 -9.47455 -9.21433 -9.09621 -8.95882 -8.25152 -6.51932 -6.23376 -3.94104 0.58039 1.63931 2.19881 2.81723 2.92483 3.05739 3.20441 3.23814 3.29298 3.33285 3.52160 3.67252 3.94118 4.18653 4.27094 4.40136 4.45014 4.49553 4.63009 4.73283 4.74743 4.86105 4.87357 4.88898 5.06612 5.08790 5.12042 5.14486 5.20182 5.27550 5.35161 5.50428 5.55871 5.65465 5.76653 5.86661 6.10774 6.14632 6.49883 6.53701 6.60559 7.58188 7.63201 7.65135 8.33760 8.56319 9.22164 10.84123 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.001316 C = 0.001258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.831874 B =21278.049472 C =22249.734925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.068 3.932 4 C -0.027 4.027 5 C 0.171 3.829 6 N -0.376 5.376 7 O 0.081 5.919 8 C 0.185 3.815 9 C 0.155 3.845 10 N -0.680 5.680 11 C 0.052 3.948 12 C 0.122 3.878 13 N -0.739 5.739 14 C 0.533 3.467 15 O -0.515 6.515 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 N -0.458 5.458 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.352 0.648 37 H 0.046 0.954 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.398 0.602 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.780 -28.108 12.874 32.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.010 4.010 4 C -0.066 4.066 5 C -0.102 4.102 6 N -0.082 5.082 7 O 0.021 5.979 8 C -0.037 4.037 9 C 0.025 3.975 10 N -0.314 5.314 11 C -0.077 4.077 12 C -0.003 4.003 13 N -0.395 5.395 14 C 0.319 3.681 15 O -0.389 6.389 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 N -0.191 5.191 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.140 0.860 36 H 0.171 0.829 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.292 -29.227 13.404 32.970 hybrid contribution 2.654 1.803 -0.506 3.248 sum 9.947 -27.424 12.898 31.896 Atomic orbital electron populations 1.22788 0.80128 1.03115 1.00425 1.87815 1.20417 1.27139 1.95548 1.22361 0.92012 0.85296 1.01311 1.19720 0.93585 0.87092 1.06168 1.25568 1.01081 0.99955 0.83598 1.74677 1.15215 0.94512 1.23777 1.85315 1.58205 1.29492 1.24910 1.28633 0.96398 0.96801 0.81877 1.20351 0.92316 0.86809 0.98054 1.60223 1.29175 1.16927 1.25100 1.22130 0.96707 0.90131 0.98756 1.21102 0.96258 0.86307 0.96596 1.45871 1.13255 1.23135 1.57217 1.20309 0.85669 0.82733 0.79424 1.90716 1.17490 1.77253 1.53426 1.23527 1.06774 0.98497 1.01580 1.85427 1.08818 1.19492 1.69682 1.22907 0.98100 1.08387 1.38985 0.90852 1.24992 0.94908 0.97649 0.96011 1.70024 1.07131 1.29546 1.43560 0.86117 0.79391 0.80551 0.79431 1.19610 1.20555 1.20574 1.71935 1.15221 1.03006 1.28971 0.93835 0.93632 0.89207 0.92827 0.92221 0.88102 0.87504 0.90720 0.85972 0.82928 0.93578 0.89455 0.90467 0.91615 0.76821 0.89183 0.89133 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.13 10.70 -35.23 -0.38 -3.50 16 3 C 0.07 0.50 5.92 37.16 0.22 0.72 16 4 C -0.03 -0.19 6.21 -27.88 -0.17 -0.36 16 5 C 0.17 1.55 7.47 -156.36 -1.17 0.38 16 6 N -0.38 -3.68 12.16 30.90 0.38 -3.30 16 7 O 0.08 0.69 11.31 18.11 0.20 0.89 16 8 C 0.18 1.38 8.03 -13.06 -0.10 1.28 16 9 C 0.16 0.70 6.31 -4.98 -0.03 0.67 16 10 N -0.68 -4.07 6.49 -115.07 -0.75 -4.82 16 11 C 0.05 0.30 5.80 -3.83 -0.02 0.28 16 12 C 0.12 1.22 5.93 -4.05 -0.02 1.20 16 13 N -0.74 -8.75 5.56 -60.30 -0.34 -9.08 16 14 C 0.53 9.49 7.85 -10.98 -0.09 9.40 16 15 O -0.52 -11.45 15.86 5.56 0.09 -11.36 16 16 C -0.15 -2.97 6.16 36.00 0.22 -2.75 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 18 C -0.54 -15.05 9.50 30.94 0.29 -14.76 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 22 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 N -0.46 -4.30 11.55 -9.87 -0.11 -4.42 16 27 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 35 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.35 1.98 8.72 -39.29 -0.34 1.64 16 37 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.40 3.38 8.47 -40.82 -0.35 3.03 16 42 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 43 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 399.41 15.07 6.02 6.02 Total: -1.00 -36.87 399.41 -7.82 -44.69 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -6.57 Total: -1.51 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 0.14 Total: -0.67 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.09 Total: -46.84 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.08 Total: -13.97 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.87 -7.82 -44.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123787355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.839 kcal (2) G-P(sol) polarization free energy of solvation -36.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds