Wall clock time and date at job start Wed Apr 1 2020 02:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 120.00029 * 2 1 4 4 H 1.48496 * 109.47248 * 240.00033 * 3 2 1 5 5 H 1.48498 * 109.46926 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47201 * 119.99797 * 3 2 1 7 7 C 1.38797 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00012 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99911 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00103 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47560 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99744 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00688 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00175 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46805 * 179.97438 * 14 13 11 16 16 N 1.46904 * 109.46736 * 179.97438 * 15 14 13 17 17 C 1.46904 * 110.99767 * 179.97438 * 16 15 14 18 18 C 1.50692 * 109.47331 * 180.02562 * 17 16 15 19 19 C 1.36126 * 120.17475 * 259.72540 * 18 17 16 20 20 C 1.39326 * 120.99691 * 180.32288 * 19 18 17 21 21 C 1.36133 * 120.98585 * 359.92630 * 20 19 18 22 22 C 1.40506 * 119.64915 * 0.04221 * 21 20 19 23 23 C 1.40545 * 121.27499 * 180.02562 * 22 21 20 24 24 C 1.36087 * 119.64756 * 179.97438 * 23 22 21 25 25 C 1.39378 * 120.99501 * 0.02562 * 24 23 22 26 26 C 1.36094 * 120.99655 * 359.95499 * 25 24 23 27 27 C 1.40505 * 120.17411 * 79.99838 * 18 17 16 28 28 H 0.97005 * 119.99924 * 0.02562 * 1 2 3 29 29 H 1.09010 * 109.47021 * 60.00395 * 10 9 7 30 30 H 1.09000 * 109.47468 * 300.00472 * 10 9 7 31 31 H 0.97002 * 119.99134 * 0.02562 * 13 11 10 32 32 H 1.08997 * 109.47689 * 60.00102 * 14 13 11 33 33 H 1.08998 * 109.46834 * 299.99313 * 14 13 11 34 34 H 1.08998 * 109.47035 * 60.00179 * 15 14 13 35 35 H 1.08994 * 109.46994 * 299.99811 * 15 14 13 36 36 H 1.00900 * 111.00295 * 303.95430 * 16 15 14 37 37 H 1.09000 * 109.47024 * 59.99760 * 17 16 15 38 38 H 1.09000 * 109.47278 * 300.00550 * 17 16 15 39 39 H 1.08006 * 119.50105 * 0.27486 * 19 18 17 40 40 H 1.08001 * 119.51155 * 179.97438 * 20 19 18 41 41 H 1.07997 * 120.17487 * 180.02562 * 21 20 19 42 42 H 1.07997 * 120.18005 * 359.95770 * 23 22 21 43 43 H 1.08005 * 119.50597 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.50663 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.17629 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0019 10 6 2.5158 -3.8914 0.0013 11 6 1.9874 -5.3026 0.0030 12 8 0.7911 -5.5022 0.0040 13 7 2.8441 -6.3431 0.0035 14 6 2.3303 -7.7150 0.0045 15 6 3.5024 -8.6985 0.0042 16 7 2.9872 -10.0742 0.0059 17 6 4.0870 -11.0482 0.0050 18 6 3.5211 -12.4449 0.0061 19 6 3.4600 -13.1574 1.1644 20 6 2.9463 -14.4524 1.1839 21 6 2.4892 -15.0423 0.0453 22 6 2.5355 -14.3376 -1.1694 23 6 2.0723 -14.9133 -2.3649 24 6 2.1323 -14.2007 -3.5227 25 6 2.6475 -12.9057 -3.5426 26 6 3.1047 -12.3158 -2.4045 27 6 3.0590 -13.0206 -1.1894 28 1 -0.4850 0.8401 -0.0004 29 1 3.1251 -3.7309 0.8909 30 1 3.1238 -3.7317 -0.8891 31 1 3.8009 -6.1834 0.0031 32 1 1.7215 -7.8758 -0.8851 33 1 1.7221 -7.8745 0.8949 34 1 4.1116 -8.5380 0.8936 35 1 4.1103 -8.5389 -0.8863 36 1 2.3685 -10.2277 0.7880 37 1 4.7009 -10.9038 0.8940 38 1 4.6984 -10.9050 -0.8859 39 1 3.8158 -12.7125 2.0819 40 1 2.9096 -14.9961 2.1163 41 1 2.0933 -16.0466 0.0756 42 1 1.6712 -15.9161 -2.3649 43 1 1.7762 -14.6454 -4.4402 44 1 2.6841 -12.3621 -4.4750 45 1 3.5008 -11.3116 -2.4350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:42 Heat of formation + Delta-G solvation = 2.320674 kcal Electronic energy + Delta-G solvation = -25025.953329 eV Core-core repulsion = 21326.864347 eV Total energy + Delta-G solvation = -3699.088982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.81159 -39.19028 -37.42672 -36.49717 -34.59262 -32.94389 -32.42362 -30.61863 -30.46431 -29.53083 -27.72864 -25.51369 -24.97154 -23.51649 -23.28769 -22.36197 -20.97507 -20.34634 -17.89463 -17.84319 -17.44783 -16.57312 -16.36379 -16.18648 -15.97848 -15.17859 -15.04198 -14.81013 -14.75157 -14.56732 -14.04537 -13.91740 -13.85170 -13.57662 -13.29767 -13.27058 -13.06486 -12.69525 -12.53486 -12.15955 -12.11777 -11.80832 -11.61222 -11.47339 -11.24744 -11.04173 -11.03499 -10.98419 -10.76572 -10.18214 -9.82203 -9.42010 -9.06004 -8.93825 -8.89394 -8.87357 -8.23393 -8.16952 -6.49531 -6.20946 -3.91715 0.19754 0.71259 1.71951 2.66240 2.98740 3.10768 3.23770 3.26859 3.29843 3.57194 3.81657 4.11894 4.20975 4.22289 4.40324 4.50660 4.60778 4.65853 4.73963 4.81934 4.84557 4.94103 5.06681 5.09055 5.14019 5.15553 5.19080 5.20488 5.22771 5.47348 5.61499 5.66382 5.76152 5.80401 5.88418 5.89852 5.91881 5.93718 6.09692 6.13772 6.24893 6.33252 6.44481 6.54281 6.63053 6.70459 6.92806 7.59590 7.69549 8.35420 8.61736 9.24080 10.86395 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.025509 B = 0.001481 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.374251 B =18900.664868 C =19343.172020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.739 5.739 14 C 0.123 3.877 15 C 0.049 3.951 16 N -0.680 5.680 17 C 0.098 3.902 18 C -0.069 4.069 19 C -0.113 4.113 20 C -0.116 4.116 21 C -0.106 4.106 22 C -0.054 4.054 23 C -0.113 4.113 24 C -0.113 4.113 25 C -0.122 4.122 26 C -0.090 4.090 27 C -0.033 4.033 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.397 0.603 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.080 0.920 36 H 0.347 0.653 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.168 -32.320 -1.398 34.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.395 5.395 14 C -0.002 4.002 15 C -0.080 4.080 16 N -0.311 5.311 17 C -0.030 4.030 18 C -0.070 4.070 19 C -0.132 4.132 20 C -0.134 4.134 21 C -0.124 4.124 22 C -0.054 4.054 23 C -0.131 4.131 24 C -0.131 4.131 25 C -0.140 4.140 26 C -0.107 4.107 27 C -0.034 4.034 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.231 0.769 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.166 0.834 37 H 0.061 0.939 38 H 0.103 0.897 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.902 -32.552 -2.081 33.812 hybrid contribution 2.708 1.350 0.943 3.169 sum 11.610 -31.202 -1.138 33.311 Atomic orbital electron populations 1.70009 1.05951 1.27565 1.46735 1.24990 0.95026 0.99011 0.94527 0.86224 0.79234 0.81251 0.78779 1.19941 1.20801 1.19962 1.22831 0.94881 0.91690 1.59108 0.90975 1.85412 1.04901 0.96279 1.96721 1.23529 1.06586 0.95358 1.04916 1.20295 0.86505 0.86228 0.75174 1.90712 1.15366 1.85573 1.47323 1.45897 1.09929 1.05440 1.78185 1.21127 0.95681 0.80316 1.03043 1.22116 0.96636 0.87896 1.01361 1.60342 1.18457 1.01540 1.50799 1.20863 0.92551 0.87874 1.01716 1.19591 0.99265 0.95350 0.92750 1.20769 1.00037 0.94825 0.97534 1.20804 0.98950 0.95258 0.98419 1.21039 0.99758 0.99680 0.91948 1.18111 0.99396 0.93750 0.94095 1.20991 1.00224 0.99893 0.91989 1.20882 0.99260 0.94821 0.98181 1.20914 0.99073 0.95320 0.98679 1.21135 0.98571 0.99600 0.91431 1.17874 0.98696 0.93183 0.93614 0.92121 0.89251 0.89186 0.76922 0.90643 0.91804 0.94425 0.90196 0.83427 0.93903 0.89732 0.86136 0.85965 0.85691 0.85757 0.86089 0.85966 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.08 6.15 36.00 0.22 -2.86 16 11 C 0.53 9.95 7.85 -10.99 -0.09 9.87 16 12 O -0.52 -11.89 15.86 5.56 0.09 -11.80 16 13 N -0.74 -9.64 5.56 -60.30 -0.33 -9.98 16 14 C 0.12 1.41 5.93 -4.04 -0.02 1.39 16 15 C 0.05 0.39 5.80 -3.82 -0.02 0.37 16 16 N -0.68 -5.35 6.49 -115.06 -0.75 -6.10 16 17 C 0.10 0.68 5.07 -4.98 -0.03 0.65 16 18 C -0.07 -0.56 5.40 -104.53 -0.56 -1.12 16 19 C -0.11 -0.82 9.57 -39.94 -0.38 -1.20 16 20 C -0.12 -0.80 9.95 -39.93 -0.40 -1.20 16 21 C -0.11 -0.78 9.77 -39.48 -0.39 -1.17 16 22 C -0.05 -0.47 5.74 -106.83 -0.61 -1.09 16 23 C -0.11 -0.87 9.77 -39.49 -0.39 -1.26 16 24 C -0.11 -0.85 9.95 -39.93 -0.40 -1.25 16 25 C -0.12 -0.98 9.95 -39.93 -0.40 -1.38 16 26 C -0.09 -0.79 9.29 -39.48 -0.37 -1.16 16 27 C -0.03 -0.31 5.74 -106.83 -0.61 -0.92 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 30 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 31 H 0.40 3.90 8.47 -40.82 -0.35 3.55 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.35 2.72 8.72 -39.29 -0.34 2.38 16 37 H 0.04 0.26 7.98 -51.93 -0.41 -0.16 16 38 H 0.08 0.56 7.01 -51.93 -0.36 0.20 16 39 H 0.12 0.66 8.00 -52.48 -0.42 0.24 16 40 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 43 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 44 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.13 1.08 6.61 -52.49 -0.35 0.73 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -35.40 395.54 -12.20 -47.60 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.43 Total: 2.62 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -4.24 Total: -15.34 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: -0.35 Total: -41.57 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.40 -12.20 -47.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.920 kcal (2) G-P(sol) polarization free energy of solvation -35.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds