Wall clock time and date at job start Wed Apr 1 2020 02:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 120.00029 * 2 1 4 4 H 1.48496 * 109.47248 * 240.00033 * 3 2 1 5 5 H 1.48498 * 109.46926 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47201 * 119.99797 * 3 2 1 7 7 C 1.38797 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00012 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99911 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00103 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47560 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99744 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00688 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00175 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46805 * 179.97438 * 14 13 11 16 16 N 1.46904 * 109.46736 * 179.97438 * 15 14 13 17 17 C 1.46904 * 110.99767 * 179.97438 * 16 15 14 18 18 C 1.50692 * 109.47331 * 180.02562 * 17 16 15 19 19 C 1.36126 * 120.17475 * 259.72540 * 18 17 16 20 20 C 1.39326 * 120.99691 * 180.32288 * 19 18 17 21 21 C 1.36133 * 120.98585 * 359.92630 * 20 19 18 22 22 C 1.40506 * 119.64915 * 0.04221 * 21 20 19 23 23 C 1.40545 * 121.27499 * 180.02562 * 22 21 20 24 24 C 1.36087 * 119.64756 * 179.97438 * 23 22 21 25 25 C 1.39378 * 120.99501 * 0.02562 * 24 23 22 26 26 C 1.36094 * 120.99655 * 359.95499 * 25 24 23 27 27 C 1.40505 * 120.17411 * 79.99838 * 18 17 16 28 28 H 0.97005 * 119.99924 * 0.02562 * 1 2 3 29 29 H 1.09010 * 109.47021 * 60.00395 * 10 9 7 30 30 H 1.09000 * 109.47468 * 300.00472 * 10 9 7 31 31 H 0.97002 * 119.99134 * 0.02562 * 13 11 10 32 32 H 1.08997 * 109.47689 * 60.00102 * 14 13 11 33 33 H 1.08998 * 109.46834 * 299.99313 * 14 13 11 34 34 H 1.08998 * 109.47035 * 60.00179 * 15 14 13 35 35 H 1.08994 * 109.46994 * 299.99811 * 15 14 13 36 36 H 1.00900 * 111.00295 * 303.95430 * 16 15 14 37 37 H 1.09000 * 109.47024 * 59.99760 * 17 16 15 38 38 H 1.09000 * 109.47278 * 300.00550 * 17 16 15 39 39 H 1.08006 * 119.50105 * 0.27486 * 19 18 17 40 40 H 1.08001 * 119.51155 * 179.97438 * 20 19 18 41 41 H 1.07997 * 120.17487 * 180.02562 * 21 20 19 42 42 H 1.07997 * 120.18005 * 359.95770 * 23 22 21 43 43 H 1.08005 * 119.50597 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.50663 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.17629 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0019 10 6 2.5158 -3.8914 0.0013 11 6 1.9874 -5.3026 0.0030 12 8 0.7911 -5.5022 0.0040 13 7 2.8441 -6.3431 0.0035 14 6 2.3303 -7.7150 0.0045 15 6 3.5024 -8.6985 0.0042 16 7 2.9872 -10.0742 0.0059 17 6 4.0870 -11.0482 0.0050 18 6 3.5211 -12.4449 0.0061 19 6 3.4600 -13.1574 1.1644 20 6 2.9463 -14.4524 1.1839 21 6 2.4892 -15.0423 0.0453 22 6 2.5355 -14.3376 -1.1694 23 6 2.0723 -14.9133 -2.3649 24 6 2.1323 -14.2007 -3.5227 25 6 2.6475 -12.9057 -3.5426 26 6 3.1047 -12.3158 -2.4045 27 6 3.0590 -13.0206 -1.1894 28 1 -0.4850 0.8401 -0.0004 29 1 3.1251 -3.7309 0.8909 30 1 3.1238 -3.7317 -0.8891 31 1 3.8009 -6.1834 0.0031 32 1 1.7215 -7.8758 -0.8851 33 1 1.7221 -7.8745 0.8949 34 1 4.1116 -8.5380 0.8936 35 1 4.1103 -8.5389 -0.8863 36 1 2.3685 -10.2277 0.7880 37 1 4.7009 -10.9038 0.8940 38 1 4.6984 -10.9050 -0.8859 39 1 3.8158 -12.7125 2.0819 40 1 2.9096 -14.9961 2.1163 41 1 2.0933 -16.0466 0.0756 42 1 1.6712 -15.9161 -2.3649 43 1 1.7762 -14.6454 -4.4402 44 1 2.6841 -12.3621 -4.4750 45 1 3.5008 -11.3116 -2.4350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123792113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:42 Heat of formation + Delta-G solvation = -21.022915 kcal Electronic energy + Delta-G solvation = -25026.965583 eV Core-core repulsion = 21326.864347 eV Total energy + Delta-G solvation = -3700.101236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.35394 -40.61526 -38.08706 -37.15423 -35.63851 -34.57800 -33.68916 -31.58092 -31.15038 -30.43727 -28.69870 -27.63250 -25.70112 -24.07704 -23.83711 -23.16477 -21.82611 -21.48067 -19.83903 -18.37513 -18.12340 -17.76874 -17.29821 -17.07149 -16.95920 -16.86994 -16.27860 -16.00144 -15.61530 -15.32511 -15.27119 -14.83614 -14.67340 -14.44684 -14.40644 -14.14130 -13.96998 -13.80485 -13.51004 -13.21731 -13.16424 -12.86016 -12.67919 -12.65110 -12.54575 -12.41028 -12.16646 -11.77809 -11.74309 -11.52678 -11.12238 -11.00597 -10.74775 -10.27289 -10.14058 -9.50848 -9.44866 -8.72663 -8.66537 -8.33747 -6.12297 -0.35728 0.14156 1.13740 1.27347 1.44713 1.47364 1.56982 1.60932 2.10301 2.23622 2.28884 3.00293 3.13016 3.32078 3.47716 3.66661 3.83731 3.90626 4.00226 4.05246 4.07717 4.14848 4.21422 4.31596 4.33820 4.41531 4.49718 4.51562 4.53289 4.56684 4.65411 4.69703 4.91986 4.94533 4.96209 5.11598 5.27034 5.35320 5.39973 5.40678 5.42293 5.55474 5.68110 5.76238 5.89299 6.01274 6.16485 6.20269 6.32100 6.50362 7.07270 7.24598 8.75214 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.025509 B = 0.001481 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.374251 B =18900.664868 C =19343.172020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.710 5.710 14 C 0.125 3.875 15 C 0.064 3.936 16 N -0.689 5.689 17 C 0.105 3.895 18 C -0.083 4.083 19 C -0.116 4.116 20 C -0.123 4.123 21 C -0.115 4.115 22 C -0.076 4.076 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.132 4.132 26 C -0.105 4.105 27 C -0.054 4.054 28 H 0.271 0.729 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.418 0.582 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.347 0.653 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.134 0.866 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.778 -33.064 -0.970 35.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.280 4.280 11 C 0.319 3.681 12 O -0.446 6.446 13 N -0.365 5.365 14 C 0.001 3.999 15 C -0.065 4.065 16 N -0.321 5.321 17 C -0.023 4.023 18 C -0.083 4.083 19 C -0.135 4.135 20 C -0.140 4.140 21 C -0.133 4.133 22 C -0.076 4.076 23 C -0.138 4.138 24 C -0.142 4.142 25 C -0.150 4.150 26 C -0.123 4.123 27 C -0.054 4.054 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.255 0.745 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.165 0.835 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.156 0.844 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.162 0.838 43 H 0.159 0.841 44 H 0.152 0.848 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.580 -33.338 -1.653 35.330 hybrid contribution 1.924 1.402 0.815 2.516 sum 13.504 -31.935 -0.838 34.683 Atomic orbital electron populations 1.70183 1.08009 1.28667 1.47929 1.26141 0.95962 1.03356 0.93713 0.84995 0.77785 0.75641 0.79509 1.18630 1.20455 1.18621 1.23183 0.95393 0.91959 1.58996 0.89781 1.85615 1.10700 0.99335 1.97070 1.23367 1.03511 0.94155 1.06960 1.20086 0.86193 0.86750 0.75097 1.90702 1.17588 1.86133 1.50150 1.45588 1.10395 1.04942 1.75596 1.21184 0.97105 0.79903 1.01731 1.21965 0.94932 0.86911 1.02742 1.60301 1.19126 1.01648 1.51057 1.20829 0.92128 0.86977 1.02410 1.19749 0.99794 0.96020 0.92759 1.21056 0.99502 0.95030 0.97920 1.21128 0.98340 0.95356 0.99214 1.21327 0.99724 1.00556 0.91652 1.18443 0.99965 0.94067 0.95171 1.21300 0.99888 1.00822 0.91761 1.21164 0.99197 0.94717 0.99078 1.21177 0.98922 0.95869 0.99051 1.21245 0.99385 0.99856 0.91842 1.18136 0.99307 0.93734 0.94212 0.92007 0.87008 0.87038 0.74489 0.92536 0.92696 0.92623 0.89096 0.83492 0.92477 0.89585 0.84418 0.83821 0.83811 0.83799 0.84139 0.84797 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.21 13.22 21.65 0.29 -55.92 16 2 C 0.01 0.74 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.45 29.55 68.60 2.03 45.47 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.55 -31.24 9.50 67.95 0.65 -30.59 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 10 C -0.13 -5.04 6.15 71.23 0.44 -4.60 16 11 C 0.53 19.61 7.85 87.65 0.69 20.30 16 12 O -0.57 -26.77 15.86 -3.04 -0.05 -26.81 16 13 N -0.71 -17.18 5.56 -463.07 -2.57 -19.75 16 14 C 0.13 2.73 5.93 86.38 0.51 3.24 16 15 C 0.06 0.86 5.80 86.30 0.50 1.36 16 16 N -0.69 -9.92 6.49 -517.93 -3.36 -13.29 16 17 C 0.10 1.28 5.07 85.55 0.43 1.71 16 18 C -0.08 -1.27 5.40 -19.81 -0.11 -1.37 16 19 C -0.12 -1.51 9.57 22.04 0.21 -1.30 16 20 C -0.12 -1.50 9.95 22.04 0.22 -1.28 16 21 C -0.11 -1.57 9.77 22.33 0.22 -1.35 16 22 C -0.08 -1.32 5.74 -21.30 -0.12 -1.44 16 23 C -0.12 -1.77 9.77 22.33 0.22 -1.55 16 24 C -0.12 -1.78 9.95 22.04 0.22 -1.56 16 25 C -0.13 -2.12 9.95 22.05 0.22 -1.90 16 26 C -0.11 -1.87 9.29 22.33 0.21 -1.66 16 27 C -0.05 -0.98 5.74 -21.30 -0.12 -1.10 16 28 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 29 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 30 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 31 H 0.42 6.82 8.47 -92.71 -0.79 6.03 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.35 5.06 8.72 -89.69 -0.78 4.28 16 37 H 0.06 0.54 7.98 -2.39 -0.02 0.52 16 38 H 0.09 1.02 7.01 -2.39 -0.02 1.00 16 39 H 0.14 1.22 8.00 -2.91 -0.02 1.19 16 40 H 0.14 1.05 8.06 -2.91 -0.02 1.02 16 41 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 43 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.13 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.13 2.17 6.61 -2.91 -0.02 2.16 16 Total: -1.00 -79.64 395.54 -0.54 -80.18 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -0.55 Total: 21.79 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 4.85 Total: -21.90 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -5.65 Total: -88.96 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.05 Total: -26.81 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -79.64 -0.54 -80.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.159 kcal (2) G-P(sol) polarization free energy of solvation -79.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds