Wall clock time and date at job start Wed Apr 1 2020 02:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35599 * 117.00438 * 2 1 4 4 C 1.39138 * 120.50479 * 359.97438 * 3 2 1 5 5 C 1.38334 * 118.62362 * 179.75178 * 4 3 2 6 6 C 1.39881 * 119.59436 * 0.53498 * 5 4 3 7 7 N 1.39148 * 119.48711 * 179.72886 * 6 5 4 8 8 C 1.37493 * 120.00184 * 4.76946 * 7 6 5 9 9 C 1.38082 * 120.55089 * 274.94845 * 8 7 6 10 10 C 1.39778 * 118.78246 * 179.97438 * 9 8 7 11 11 O 1.35256 * 120.10480 * 180.02562 * 10 9 8 12 12 N 1.32782 * 119.79983 * 0.02562 * 10 9 8 13 13 C 1.33000 * 121.12501 * 359.97438 * 12 10 9 14 14 O 1.21986 * 119.35851 * 179.72574 * 13 12 10 15 15 N 1.34580 * 121.27707 * 359.97438 * 13 12 10 16 16 C 1.46507 * 119.93769 * 180.02562 * 15 13 12 17 17 C 1.52998 * 117.49917 * 312.31163 * 16 15 13 18 18 C 1.52997 * 117.49692 * 243.65476 * 16 15 13 19 19 N 1.31853 * 121.01886 * 359.44853 * 6 5 4 20 20 C 1.33790 * 121.47931 * 0.27986 * 19 6 5 21 21 C 1.40932 * 119.85075 * 179.97438 * 20 19 6 22 22 H 1.08000 * 120.00138 * 174.68911 * 21 20 19 23 23 C 1.40021 * 120.00154 * 354.68238 * 21 20 19 24 24 N 1.30781 * 119.99618 * 5.29163 * 23 21 20 25 25 Si 1.86795 * 120.00136 * 185.28190 * 23 21 20 26 26 H 1.48501 * 109.46864 * 95.00213 * 25 23 21 27 27 H 1.48502 * 109.47523 * 214.99884 * 25 23 21 28 28 H 1.48494 * 109.47529 * 335.00205 * 25 23 21 29 29 H 1.09002 * 109.47091 * 60.00223 * 1 2 3 30 30 H 1.09002 * 109.47625 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47031 * 299.99949 * 1 2 3 32 32 H 1.08003 * 120.68950 * 0.04788 * 4 3 2 33 33 H 1.07998 * 120.20298 * 180.28578 * 5 4 3 34 34 H 0.97003 * 119.99296 * 184.76930 * 7 6 5 35 35 H 1.08002 * 120.61308 * 0.02731 * 9 8 7 36 36 H 0.96700 * 114.00248 * 179.97438 * 11 10 9 37 37 H 1.08992 * 115.55131 * 97.98680 * 16 15 13 38 38 H 1.08999 * 117.49844 * 0.02562 * 17 16 15 39 39 H 1.08998 * 117.50116 * 145.02028 * 17 16 15 40 40 H 1.08994 * 117.50393 * 214.98067 * 18 16 15 41 41 H 1.09007 * 117.49826 * 359.97438 * 18 16 15 42 42 H 0.97004 * 119.99767 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 1.2972 2.3817 -0.0005 5 6 1.9655 3.5930 0.0047 6 6 3.3641 3.6103 -0.0009 7 7 4.0340 4.8300 -0.0013 8 6 3.3253 6.0036 0.1028 9 6 2.7849 6.5991 -1.0197 10 6 2.0708 7.7915 -0.8712 11 8 1.5297 8.3974 -1.9526 12 7 1.9253 8.3277 0.3348 13 6 2.4484 7.7491 1.4121 14 8 2.2993 8.2724 2.5039 15 7 3.1431 6.6002 1.3203 16 6 3.7061 5.9878 2.5264 17 6 4.4825 6.8952 3.4828 18 6 5.2294 5.8774 2.6173 19 7 4.0576 2.4889 -0.0003 20 6 3.4545 1.2946 0.0001 21 6 4.2295 0.1174 0.0001 22 1 3.7486 -0.8457 0.0870 23 6 5.6229 0.1965 -0.1126 24 7 6.2136 1.3634 -0.1137 25 14 6.6381 -1.3644 -0.2611 26 1 6.8934 -1.6542 -1.6950 27 1 7.9317 -1.1828 0.4451 28 1 5.8963 -2.4973 0.3484 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2177 2.3478 -0.0002 33 1 1.4107 4.5195 0.0091 34 1 5.0010 4.8521 -0.0750 35 1 2.9108 6.1514 -1.9944 36 1 1.0552 9.2150 -1.7490 37 1 3.1162 5.1827 2.9641 38 1 4.5740 7.9478 3.2150 39 1 4.4036 6.6868 4.5498 40 1 5.6416 4.9998 3.1151 41 1 5.8126 6.2599 1.7796 42 1 7.1790 1.4182 -0.1915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167762012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:30 Heat of formation + Delta-G solvation = 23.519530 kcal Electronic energy + Delta-G solvation = -30368.831792 eV Core-core repulsion = 26124.368846 eV Total energy + Delta-G solvation = -4244.462945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.77845 -39.18808 -38.83492 -37.76988 -36.82359 -36.31592 -34.69145 -33.52980 -32.55041 -30.61906 -30.22107 -28.76348 -26.61475 -25.53126 -24.62554 -23.69082 -22.33253 -21.84892 -21.64796 -20.97358 -19.56920 -18.40596 -17.64880 -17.32367 -17.00876 -16.70025 -16.10493 -15.65331 -15.41102 -15.14204 -15.04799 -14.79437 -14.69632 -14.42389 -13.96905 -13.66814 -13.33195 -13.17080 -13.00166 -12.59641 -12.52718 -11.92695 -11.65872 -11.49694 -11.39125 -11.37068 -10.92776 -10.80685 -10.75165 -10.68003 -10.60854 -10.35562 -10.04566 -9.98862 -9.75583 -9.68128 -9.06984 -8.39389 -8.30965 -7.99515 -6.83839 -6.63105 -4.58177 0.64211 1.74109 2.28027 2.58626 2.82364 3.01850 3.05988 3.07411 3.19015 3.49803 3.67807 3.84449 3.86092 4.38514 4.43506 4.56927 4.71616 4.76310 4.92895 5.15844 5.33914 5.49944 5.61147 5.64568 5.65326 5.72538 5.76061 5.83755 5.90510 5.95151 6.06570 6.11309 6.13162 6.39132 6.43528 6.55936 6.95607 6.98106 7.06462 7.18220 7.40776 7.77026 7.92535 7.94227 8.10830 8.19923 8.29739 8.55228 8.87150 9.81287 10.10753 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.003773 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.434865 B = 7419.945615 C = 8419.852265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.310 6.310 3 C -0.056 4.056 4 C -0.115 4.115 5 C -0.331 4.331 6 C 0.384 3.616 7 N -0.684 5.684 8 C 0.508 3.492 9 C -0.294 4.294 10 C 0.461 3.539 11 O -0.448 6.448 12 N -0.628 5.628 13 C 0.660 3.340 14 O -0.538 6.538 15 N -0.504 5.504 16 C 0.052 3.948 17 C -0.148 4.148 18 C -0.165 4.165 19 N -0.497 5.497 20 C 0.284 3.716 21 C -0.403 4.403 22 H 0.095 0.905 23 C 0.067 3.933 24 N -0.711 5.711 25 Si 0.911 3.089 26 H -0.269 1.269 27 H -0.276 1.276 28 H -0.259 1.259 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.038 0.962 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.421 0.579 35 H 0.166 0.834 36 H 0.414 0.586 37 H 0.132 0.868 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.861 5.994 -1.040 6.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.223 6.223 3 C -0.104 4.104 4 C -0.139 4.139 5 C -0.358 4.358 6 C 0.149 3.851 7 N -0.326 5.326 8 C 0.295 3.705 9 C -0.323 4.323 10 C 0.263 3.737 11 O -0.242 6.242 12 N -0.386 5.386 13 C 0.361 3.639 14 O -0.413 6.413 15 N -0.224 5.224 16 C -0.052 4.052 17 C -0.185 4.185 18 C -0.203 4.203 19 N -0.218 5.218 20 C 0.157 3.843 21 C -0.435 4.435 22 H 0.113 0.887 23 C -0.158 4.158 24 N -0.333 5.333 25 Si 0.735 3.265 26 H -0.194 1.194 27 H -0.201 1.201 28 H -0.183 1.183 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.263 0.737 35 H 0.183 0.817 36 H 0.270 0.730 37 H 0.150 0.850 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.115 0.885 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.099 6.571 -0.361 6.673 hybrid contribution -0.424 -0.589 -0.214 0.757 sum -1.524 5.982 -0.574 6.200 Atomic orbital electron populations 1.22739 0.81704 1.01862 0.99874 1.85928 1.18234 1.27596 1.90522 1.20076 0.93414 0.83287 1.13613 1.20665 0.97677 0.91999 1.03603 1.20306 0.92282 0.96715 1.26468 1.18100 0.87188 0.85191 0.94576 1.41017 1.08965 0.99833 1.82792 1.17563 0.85424 0.83717 0.83760 1.20973 1.12050 0.99122 1.00154 1.20067 0.82184 0.86443 0.85025 1.85015 1.67268 1.42312 1.29620 1.69552 1.34671 1.36281 0.98112 1.17195 0.79102 0.78716 0.88846 1.90974 1.62008 1.63047 1.25294 1.47234 1.44733 1.22928 1.07507 1.21834 0.94145 1.01058 0.88210 1.23201 1.00544 0.97336 0.97440 1.23367 0.91886 1.02232 1.02795 1.68198 1.34708 0.94704 1.24194 1.17697 0.85067 0.90612 0.90952 1.19610 0.90863 0.93242 1.39762 0.88732 1.26087 0.98658 0.97459 0.93633 1.70117 1.10481 1.24775 1.27899 0.86245 0.79037 0.81954 0.79307 1.19380 1.20106 1.18308 0.94230 0.89887 0.94298 0.87766 0.89196 0.73744 0.81695 0.73026 0.85026 0.87895 0.87416 0.86775 0.88546 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.83 101.05 0.99 1.54 16 2 O -0.31 -6.66 9.62 -18.49 -0.18 -6.84 16 3 C -0.06 -1.30 6.74 -38.10 -0.26 -1.55 16 4 C -0.11 -2.45 9.12 -39.21 -0.36 -2.80 16 5 C -0.33 -6.95 9.30 -38.93 -0.36 -7.31 16 6 C 0.38 8.10 7.62 -155.06 -1.18 6.92 16 7 N -0.68 -11.70 4.19 -11.14 -0.05 -11.75 16 8 C 0.51 8.04 5.08 -152.95 -0.78 7.26 16 9 C -0.29 -4.26 9.57 -39.06 -0.37 -4.63 16 10 C 0.46 6.42 7.89 -16.57 -0.13 6.29 16 11 O -0.45 -4.72 13.55 -17.46 -0.24 -4.96 16 12 N -0.63 -10.34 10.38 -16.93 -0.18 -10.52 16 13 C 0.66 12.03 8.16 -88.67 -0.72 11.31 16 14 O -0.54 -11.11 15.58 4.93 0.08 -11.04 16 15 N -0.50 -8.26 2.93 -113.73 -0.33 -8.60 16 16 C 0.05 0.79 5.47 -67.93 -0.37 0.42 16 17 C -0.15 -1.97 9.20 -26.70 -0.25 -2.21 16 18 C -0.17 -2.15 9.78 -26.70 -0.26 -2.41 16 19 N -0.50 -11.96 7.90 -10.15 -0.08 -12.04 16 20 C 0.28 7.15 6.56 -84.85 -0.56 6.60 16 21 C -0.40 -10.05 8.93 -37.89 -0.34 -10.39 16 22 H 0.09 2.31 7.33 -52.49 -0.38 1.93 16 23 C 0.07 1.56 5.49 -17.33 -0.10 1.47 16 24 N -0.71 -16.74 11.47 55.55 0.64 -16.11 16 25 Si 0.91 17.31 29.56 -169.99 -5.03 12.28 16 26 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 27 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 28 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 29 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.04 0.58 7.69 -51.93 -0.40 0.18 16 32 H 0.10 1.95 6.43 -52.48 -0.34 1.61 16 33 H 0.09 1.81 6.69 -52.49 -0.35 1.46 16 34 H 0.42 6.86 8.91 -40.82 -0.36 6.50 16 35 H 0.17 2.24 8.06 -52.49 -0.42 1.82 16 36 H 0.41 2.66 8.98 45.56 0.41 3.06 16 37 H 0.13 2.13 8.14 -51.93 -0.42 1.71 16 38 H 0.10 1.49 7.40 -51.93 -0.38 1.11 16 39 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.10 1.20 8.14 -51.92 -0.42 0.78 16 42 H 0.27 5.83 8.30 -40.82 -0.34 5.49 16 LS Contribution 363.41 15.07 5.48 5.48 Total: -1.00 -30.39 363.41 -8.80 -39.19 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -3.88 Total: 14.40 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: -5.04 Total: 10.49 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.00 Total: -59.01 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.34 Total: -22.83 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.39 -8.80 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167762012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.714 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds