Wall clock time and date at job start Wed Apr 1 2020 02:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99794 * 2 1 4 4 C 1.52997 * 109.47334 * 293.95745 * 3 2 1 5 5 N 1.46507 * 109.47118 * 180.02562 * 4 3 2 6 6 C 1.34778 * 119.99887 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99809 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99843 * 179.97438 * 6 5 4 9 9 S 1.80997 * 109.46976 * 180.02562 * 8 6 5 10 10 C 1.76210 * 100.00076 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99526 * 359.97438 * 10 9 8 12 12 C 1.38791 * 120.00089 * 179.97438 * 10 9 8 13 13 N 1.31632 * 120.00322 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00222 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46856 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47320 * 120.00110 * 14 12 10 17 17 H 1.48499 * 109.47350 * 240.00495 * 14 12 10 18 18 C 1.46892 * 111.00098 * 123.95341 * 2 1 3 19 19 C 1.53004 * 109.46942 * 66.04787 * 18 2 1 20 20 N 1.46509 * 109.46984 * 179.97438 * 19 18 2 21 21 C 1.34769 * 124.17490 * 270.01577 * 20 19 18 22 22 O 1.21234 * 127.15997 * 359.92431 * 21 20 19 23 23 C 1.51580 * 105.68335 * 179.74750 * 21 20 19 24 24 N 1.47318 * 103.59365 * 0.33419 * 23 21 20 25 25 C 1.33788 * 124.17736 * 89.97947 * 20 19 18 26 26 O 1.21541 * 123.76957 * 0.02748 * 25 20 19 27 27 H 1.09002 * 109.46843 * 296.04336 * 1 2 3 28 28 H 1.08999 * 109.47335 * 56.04483 * 1 2 3 29 29 H 1.08994 * 109.47162 * 176.04612 * 1 2 3 30 30 H 1.09008 * 109.47261 * 53.95475 * 3 2 1 31 31 H 1.08996 * 109.47085 * 173.95274 * 3 2 1 32 32 H 1.09002 * 109.46807 * 299.99613 * 4 3 2 33 33 H 1.08996 * 109.47418 * 59.99734 * 4 3 2 34 34 H 0.96999 * 119.99985 * 359.97438 * 5 4 3 35 35 H 1.08997 * 109.47141 * 300.00299 * 8 6 5 36 36 H 1.08996 * 109.47092 * 59.99917 * 8 6 5 37 37 H 0.96999 * 120.00307 * 179.97438 * 13 12 10 38 38 H 1.09000 * 109.47592 * 306.04814 * 18 2 1 39 39 H 1.09000 * 109.47333 * 186.04443 * 18 2 1 40 40 H 1.08996 * 109.47286 * 60.00309 * 19 18 2 41 41 H 1.08992 * 109.47098 * 299.99879 * 19 18 2 42 42 H 1.08995 * 110.69021 * 241.76513 * 23 21 20 43 43 H 1.08998 * 110.51199 * 118.81345 * 23 21 20 44 44 H 0.97001 * 126.69459 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 7 2.1569 3.4251 -1.3184 6 6 1.9565 4.2239 -2.3853 7 8 1.3414 3.8104 -3.3453 8 6 2.4965 5.6307 -2.3852 9 16 2.0660 6.4423 -3.9447 10 6 2.7994 8.0224 -3.6801 11 1 3.3183 8.2288 -2.7557 12 6 2.7101 9.0018 -4.6595 13 7 2.0772 8.7504 -5.7859 14 14 3.4870 10.6772 -4.3787 15 1 4.1336 10.7052 -3.0421 16 1 4.5074 10.9317 -5.4270 17 1 2.4381 11.7264 -4.4437 18 6 1.9955 -0.7659 1.1375 19 6 1.6315 -2.2426 0.9702 20 7 2.1571 -3.0066 2.1045 21 6 3.3798 -3.5726 2.1345 22 8 4.2200 -3.5476 1.2608 23 6 3.4878 -4.2430 3.4897 24 7 2.1886 -3.9565 4.1223 25 6 1.4828 -3.2281 3.2386 26 8 0.3582 -2.8170 3.4471 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 1.5611 1.9274 0.8310 31 1 3.0797 1.3445 0.1083 32 1 2.0658 1.5016 -2.1491 33 1 0.5471 2.0845 -1.4264 34 1 2.6491 3.7556 -0.5507 35 1 2.0619 6.1867 -1.5546 36 1 3.5807 5.6037 -2.2765 37 1 2.0145 9.4349 -6.4703 38 1 1.5612 -0.3873 2.0628 39 1 3.0798 -0.6611 1.1756 40 1 2.0659 -2.6213 0.0451 41 1 0.5473 -2.3475 0.9322 42 1 4.3013 -3.8085 4.0705 43 1 3.6292 -5.3176 3.3740 44 1 1.9002 -4.2346 5.0057 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663145888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:53 Heat of formation + Delta-G solvation = -65.205928 kcal Electronic energy + Delta-G solvation = -26376.026050 eV Core-core repulsion = 22263.159632 eV Total energy + Delta-G solvation = -4112.866418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.88836 -39.30577 -39.12956 -38.24704 -36.66414 -35.56294 -34.30080 -32.41698 -30.99172 -29.57243 -28.29949 -28.04525 -26.34955 -25.44843 -23.55870 -23.14167 -21.41055 -20.82063 -20.33738 -18.63413 -17.82832 -17.76202 -17.30913 -16.62703 -16.27072 -16.18840 -15.94857 -15.78929 -15.26995 -14.89369 -14.80374 -14.79183 -14.71644 -14.46602 -14.16124 -13.96152 -13.71832 -13.34348 -13.07840 -12.79241 -12.53268 -12.25204 -12.03309 -11.77698 -11.59061 -11.49104 -11.26071 -11.05994 -11.00710 -10.82421 -10.74960 -10.38846 -10.13601 -9.79488 -9.40280 -9.06653 -8.85949 -8.82622 -8.21498 -6.48437 -6.20553 -3.90971 1.03940 1.56287 2.39249 2.50636 2.95662 3.12400 3.22458 3.25643 3.31328 3.37215 3.52192 3.93405 4.13967 4.21434 4.31835 4.37599 4.47956 4.58787 4.79351 4.82814 4.89852 4.94001 5.07617 5.14662 5.18320 5.18785 5.25148 5.35737 5.41220 5.59435 5.68826 5.78846 5.91521 5.94349 6.10330 6.15356 6.42410 6.48551 6.54020 6.67686 6.77970 7.50898 7.61016 7.71261 8.36616 8.63303 9.24862 10.86945 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.030334 B = 0.001449 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.826475 B =19322.421040 C =19557.421158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.533 5.533 3 C 0.047 3.953 4 C 0.124 3.876 5 N -0.740 5.740 6 C 0.533 3.467 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.043 3.957 19 C 0.121 3.879 20 N -0.576 5.576 21 C 0.518 3.482 22 O -0.461 6.461 23 C 0.062 3.938 24 N -0.730 5.730 25 C 0.700 3.300 26 O -0.540 6.540 27 H 0.031 0.969 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.268 0.732 38 H 0.043 0.957 39 H 0.081 0.919 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.436 -28.586 23.986 37.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.257 5.257 3 C -0.081 4.081 4 C 0.000 4.000 5 N -0.395 5.395 6 C 0.319 3.681 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.166 5.834 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.087 4.087 19 C 0.000 4.000 20 N -0.323 5.323 21 C 0.305 3.695 22 O -0.329 6.329 23 C -0.066 4.066 24 N -0.395 5.395 25 C 0.400 3.600 26 O -0.413 6.413 27 H 0.050 0.950 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.230 0.770 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.125 0.875 41 H 0.117 0.883 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 1.331 -29.165 21.283 36.129 hybrid contribution 1.104 1.942 2.884 3.648 sum 2.436 -27.223 24.167 36.484 Atomic orbital electron populations 1.22618 0.86541 1.02807 1.01586 1.61737 1.08654 1.13399 1.41953 1.22260 1.00807 0.87965 0.97091 1.21192 0.99522 0.82145 0.97179 1.45915 1.59562 1.13687 1.20336 1.20284 0.79232 0.86829 0.81799 1.90709 1.39498 1.75138 1.33645 1.23526 1.03958 0.95003 1.07885 1.85413 1.73290 1.10981 1.13692 1.22915 1.41019 0.98477 1.05944 0.90874 1.24991 0.95170 0.98987 0.94448 1.70029 1.39786 1.34333 1.06120 0.86114 0.78868 0.82146 0.78341 1.19643 1.20565 1.20574 1.22377 1.00987 0.92773 0.92515 1.21696 1.01188 0.90416 0.86736 1.46361 1.17503 1.50715 1.17720 1.20940 0.81184 0.78094 0.89253 1.90876 1.42614 1.57254 1.42199 1.22495 0.88345 1.03787 0.91933 1.45446 1.16524 1.57840 1.19704 1.15905 0.84373 0.79290 0.80410 1.91049 1.16503 1.55266 1.78443 0.94991 0.90169 0.90919 0.93894 0.89943 0.90574 0.91485 0.76964 0.89248 0.89186 0.92236 0.93835 0.90083 0.87471 0.88252 0.85742 0.85755 0.71359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.13 60.07 0.55 0.65 16 2 N -0.53 -4.57 4.76 -242.92 -1.16 -5.73 16 3 C 0.05 0.41 5.07 -3.83 -0.02 0.40 16 4 C 0.12 1.48 5.61 -4.04 -0.02 1.46 16 5 N -0.74 -9.93 5.56 -60.29 -0.33 -10.27 16 6 C 0.53 10.07 7.85 -10.99 -0.09 9.99 16 7 O -0.52 -11.94 15.86 5.56 0.09 -11.86 16 8 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 10 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 11 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 14 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.04 0.32 5.28 -3.83 -0.02 0.30 16 19 C 0.12 0.84 5.62 -4.03 -0.02 0.82 16 20 N -0.58 -3.70 2.60 -120.73 -0.31 -4.01 16 21 C 0.52 2.90 8.32 -10.56 -0.09 2.81 16 22 O -0.46 -4.13 17.76 5.60 0.10 -4.03 16 23 C 0.06 0.07 7.97 -4.31 -0.03 0.04 16 24 N -0.73 -1.93 6.58 -65.74 -0.43 -2.37 16 25 C 0.70 4.80 8.62 -88.02 -0.76 4.04 16 26 O -0.54 -5.78 17.48 5.33 0.09 -5.69 16 27 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.70 6.30 -51.93 -0.33 0.37 16 29 H 0.07 0.51 6.47 -51.93 -0.34 0.17 16 30 H 0.04 0.36 8.12 -51.92 -0.42 -0.06 16 31 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 0.86 6.47 -51.93 -0.34 0.52 16 34 H 0.40 4.07 8.47 -40.82 -0.35 3.72 16 35 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 36 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 39 H 0.08 0.62 7.93 -51.93 -0.41 0.21 16 40 H 0.11 0.76 8.00 -51.93 -0.42 0.35 16 41 H 0.10 0.70 6.27 -51.93 -0.33 0.37 16 42 H 0.12 -0.11 8.14 -51.93 -0.42 -0.53 16 43 H 0.12 -0.12 8.14 -51.93 -0.42 -0.55 16 44 H 0.44 0.20 8.96 -40.82 -0.37 -0.16 16 LS Contribution 387.92 15.07 5.85 5.85 Total: -1.00 -39.14 387.92 -8.90 -48.04 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.20 Total: -1.54 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -0.08 Total: 4.56 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -1.51 Total: -47.95 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: 0.28 Total: -21.58 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -39.14 -8.90 -48.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663145888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.167 kcal (2) G-P(sol) polarization free energy of solvation -39.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds